Wall clock time and date at job start Tue Mar 31 2020 10:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46893 * 111.00070 * 2 1 4 4 C 1.53001 * 109.47142 * 286.95016 * 3 2 1 5 5 C 1.50702 * 115.55070 * 150.60263 * 4 3 2 6 6 H 1.08006 * 120.00108 * 114.73108 * 5 4 3 7 7 C 1.37876 * 120.00269 * 294.73015 * 5 4 3 8 8 N 1.31520 * 119.99425 * 351.57406 * 7 5 4 9 9 Si 1.86797 * 120.00365 * 171.57779 * 7 5 4 10 10 H 1.48501 * 109.47272 * 89.99969 * 9 7 5 11 11 H 1.48497 * 109.47040 * 210.00012 * 9 7 5 12 12 H 1.48493 * 109.47044 * 329.99906 * 9 7 5 13 13 C 1.52999 * 117.49788 * 4.89557 * 4 3 2 14 14 C 1.53001 * 117.49996 * 296.27176 * 4 3 2 15 15 C 1.46893 * 110.99702 * 123.95318 * 2 1 3 16 16 H 1.08993 * 109.47564 * 291.63589 * 15 2 1 17 17 C 1.53000 * 109.47233 * 51.64064 * 15 2 1 18 18 C 1.53001 * 109.47654 * 59.99433 * 17 15 2 19 19 C 1.52999 * 109.46725 * 60.00280 * 18 17 15 20 20 H 1.08993 * 109.47624 * 59.99926 * 19 18 17 21 21 C 1.53005 * 109.47162 * 180.02562 * 19 18 17 22 22 F 1.39896 * 109.46958 * 59.99773 * 21 19 18 23 23 F 1.39899 * 109.46997 * 179.97438 * 21 19 18 24 24 F 1.39895 * 109.46892 * 300.00061 * 21 19 18 25 25 C 1.53009 * 109.47183 * 300.00095 * 19 18 17 26 26 C 1.52999 * 109.47031 * 171.63714 * 15 2 1 27 27 H 1.09000 * 109.47304 * 289.26313 * 1 2 3 28 28 H 1.09005 * 109.47106 * 49.25755 * 1 2 3 29 29 H 1.08992 * 109.47456 * 169.25625 * 1 2 3 30 30 H 1.08999 * 109.47328 * 46.94898 * 3 2 1 31 31 H 1.09005 * 109.47322 * 166.95286 * 3 2 1 32 32 H 0.97005 * 119.99416 * 185.00698 * 8 7 5 33 33 H 1.09000 * 117.50043 * 359.97438 * 13 4 3 34 34 H 1.08999 * 117.49800 * 145.02400 * 13 4 3 35 35 H 1.09005 * 117.49878 * 214.98033 * 14 4 3 36 36 H 1.08998 * 117.49899 * 359.97438 * 14 4 3 37 37 H 1.09004 * 109.47233 * 299.99465 * 17 15 2 38 38 H 1.09004 * 109.47181 * 180.02562 * 17 15 2 39 39 H 1.08996 * 109.47386 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.46871 * 300.00372 * 18 17 15 41 41 H 1.09002 * 109.46585 * 300.00352 * 25 19 18 42 42 H 1.09000 * 109.47106 * 180.02562 * 25 19 18 43 43 H 1.08994 * 109.47499 * 60.00015 * 26 15 2 44 44 H 1.08995 * 109.47371 * 180.02562 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7856 1.9982 -1.3798 5 6 1.6082 3.4947 -1.3938 6 1 2.3469 4.1217 -1.8710 7 6 0.5029 4.0635 -0.7973 8 7 -0.4761 3.2999 -0.3635 9 14 0.3958 5.9185 -0.6055 10 1 -0.2586 6.5031 -1.8035 11 1 -0.4018 6.2458 0.6036 12 1 1.7627 6.4812 -0.4640 13 6 1.0058 1.1842 -2.4143 14 6 2.5181 1.3627 -2.5633 15 6 1.9954 -0.7659 1.1376 16 1 1.7719 -0.2389 2.0651 17 6 1.3424 -2.1493 1.1669 18 6 1.6561 -2.8892 -0.1351 19 6 3.1712 -3.0435 -0.2815 20 1 3.5619 -3.6118 0.5625 21 6 3.4851 -3.7828 -1.5838 22 9 2.9838 -3.0529 -2.6668 23 9 4.8705 -3.9234 -1.7179 24 9 2.8879 -5.0476 -1.5575 25 6 3.8244 -1.6601 -0.3109 26 6 3.5105 -0.9203 0.9911 27 1 -0.3634 0.3390 0.9701 28 1 -0.3633 0.6707 -0.7786 29 1 -0.3634 -1.0096 -0.1916 30 1 1.4708 1.9620 0.7509 31 1 3.0604 1.3518 0.2320 32 1 -1.2849 3.7023 -0.0102 33 1 0.6426 0.2020 -2.1120 34 1 0.3641 1.7311 -3.1052 35 1 2.8712 2.0269 -3.3521 36 1 3.1497 0.4982 -2.3588 37 1 0.2629 -2.0394 1.2712 38 1 1.7327 -2.7175 2.0113 39 1 1.1913 -3.8748 -0.1140 40 1 1.2655 -2.3208 -0.9791 41 1 3.4337 -1.0918 -1.1550 42 1 4.9037 -1.7701 -0.4156 43 1 3.9758 0.0651 0.9702 44 1 3.9011 -1.4890 1.8349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602827165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:07 Heat of formation + Delta-G solvation = -142.419672 kcal Electronic energy + Delta-G solvation = -27711.292797 eV Core-core repulsion = 23634.566696 eV Total energy + Delta-G solvation = -4076.726100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -50.99433 -48.49561 -48.45072 -40.67866 -38.33911 -35.56444 -33.95620 -32.05223 -31.39381 -28.57046 -27.20894 -26.56583 -24.48485 -23.56435 -22.65638 -22.28665 -20.69973 -19.90365 -19.13436 -18.95819 -18.43062 -18.00446 -16.79708 -16.49022 -16.35683 -15.76203 -15.57005 -15.40804 -15.26773 -14.91940 -14.69542 -14.64213 -14.62628 -14.33824 -14.26509 -13.93054 -13.30558 -13.14822 -13.10559 -13.07913 -12.87473 -12.83631 -12.69914 -12.47541 -12.33284 -12.12595 -11.82109 -11.71100 -11.54526 -11.17591 -10.92251 -10.92168 -10.77377 -10.28698 -9.71326 -8.89081 -8.04177 -6.13178 1.40251 1.43603 1.51872 1.91862 2.44654 2.93082 3.13163 3.13933 3.21352 3.38628 3.70502 3.83906 3.89373 4.14739 4.30579 4.31766 4.46450 4.49778 4.51210 4.63669 4.68309 4.75088 4.80040 4.85793 4.91493 5.03159 5.07793 5.11582 5.13430 5.23464 5.26884 5.30551 5.35430 5.42684 5.51087 5.58314 5.65389 5.75237 5.84016 5.94244 6.33196 6.56335 6.67005 6.93742 7.51307 9.00246 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.004383 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.875814 B = 6387.109250 C = 6722.844649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.519 5.519 3 C 0.115 3.885 4 C 0.032 3.968 5 C -0.519 4.519 6 H 0.044 0.956 7 C 0.035 3.965 8 N -0.890 5.890 9 Si 0.941 3.059 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.272 1.272 13 C -0.165 4.165 14 C -0.187 4.187 15 C 0.072 3.928 16 H 0.026 0.974 17 C -0.100 4.100 18 C -0.107 4.107 19 C -0.115 4.115 20 H 0.133 0.867 21 C 0.450 3.550 22 F -0.191 7.191 23 F -0.191 7.191 24 F -0.189 7.189 25 C -0.109 4.109 26 C -0.100 4.100 27 H -0.002 1.002 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.008 0.992 31 H 0.058 0.942 32 H 0.257 0.743 33 H 0.097 0.903 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 -15.585 4.417 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.243 5.243 3 C -0.012 4.012 4 C 0.031 3.969 5 C -0.557 4.557 6 H 0.062 0.938 7 C -0.167 4.167 8 N -0.527 5.527 9 Si 0.767 3.233 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.197 1.197 13 C -0.203 4.203 14 C -0.224 4.224 15 C -0.037 4.037 16 H 0.044 0.956 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.134 4.134 20 H 0.151 0.849 21 C 0.396 3.604 22 F -0.173 7.173 23 F -0.172 7.172 24 F -0.171 7.171 25 C -0.146 4.146 26 C -0.138 4.138 27 H 0.017 0.983 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.027 0.973 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.143 -15.829 4.119 17.471 hybrid contribution -0.651 1.755 0.253 1.889 sum 5.492 -14.073 4.372 15.727 Atomic orbital electron populations 1.22416 0.88014 1.00924 0.99998 1.62121 1.07342 1.13346 1.41535 1.21330 0.96884 0.86722 0.96304 1.18901 0.99210 0.91429 0.87383 1.20810 1.07229 0.91442 1.36212 0.93805 1.25501 0.95503 1.00908 0.94754 1.70053 1.05304 1.35511 1.41805 0.85832 0.77918 0.82136 0.77369 1.20743 1.20991 1.19718 1.22717 0.92121 1.01066 1.04350 1.22796 0.95038 1.02145 1.02406 1.21781 0.95736 0.94732 0.91409 0.95641 1.21526 1.00791 0.93868 0.97558 1.21454 0.92052 1.01185 0.99807 1.22449 1.00228 0.98041 0.92675 0.84876 1.20982 0.73647 0.77512 0.88235 1.93182 1.87403 1.77450 1.59271 1.93147 1.31478 1.95915 1.96665 1.93145 1.83771 1.43264 1.96892 1.21455 0.99984 0.93117 1.00071 1.21509 0.94160 1.00530 0.97591 0.98331 0.90757 0.91293 0.97328 0.92341 0.93373 0.88534 0.94292 0.92265 0.89527 0.91519 0.89110 0.90172 0.91488 0.91360 0.90707 0.92275 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.29 7.23 127.69 0.92 2.21 16 2 N -0.52 -18.10 2.24 -897.08 -2.01 -20.10 16 3 C 0.12 4.94 4.84 86.30 0.42 5.36 16 4 C 0.03 1.51 1.65 -52.93 -0.09 1.42 16 5 C -0.52 -28.17 8.81 25.60 0.23 -27.95 16 6 H 0.04 2.42 7.83 -2.91 -0.02 2.40 16 7 C 0.03 1.86 5.18 84.65 0.44 2.30 16 8 N -0.89 -48.38 12.36 21.45 0.27 -48.11 16 9 Si 0.94 42.90 29.55 68.60 2.03 44.93 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 C -0.16 -7.62 8.01 30.60 0.24 -7.37 16 14 C -0.19 -8.13 9.92 30.60 0.30 -7.83 16 15 C 0.07 1.95 2.26 44.92 0.10 2.06 16 16 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 17 C -0.10 -2.11 4.90 30.59 0.15 -1.96 16 18 C -0.11 -2.28 4.64 30.59 0.14 -2.14 16 19 C -0.11 -2.27 2.17 -10.79 -0.02 -2.30 16 20 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 21 C 0.45 10.40 2.69 71.98 0.19 10.60 16 22 F -0.19 -5.41 16.28 44.97 0.73 -4.68 16 23 F -0.19 -4.49 16.80 44.97 0.76 -3.73 16 24 F -0.19 -4.30 16.80 44.97 0.76 -3.55 16 25 C -0.11 -2.52 4.80 30.60 0.15 -2.37 16 26 C -0.10 -2.32 5.24 30.60 0.16 -2.16 16 27 H 0.00 -0.08 8.11 -2.39 -0.02 -0.10 16 28 H 0.07 3.33 5.01 -2.38 -0.01 3.32 16 29 H 0.07 2.18 6.05 -2.39 -0.01 2.17 16 30 H 0.01 0.42 7.24 -2.39 -0.02 0.40 16 31 H 0.06 2.35 5.83 -2.38 -0.01 2.34 16 32 H 0.26 13.53 8.32 -92.70 -0.77 12.76 16 33 H 0.10 4.19 5.30 -2.39 -0.01 4.18 16 34 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 36 H 0.09 3.43 6.69 -2.39 -0.02 3.41 16 37 H 0.07 1.49 6.47 -2.38 -0.02 1.48 16 38 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.08 1.46 7.80 -2.39 -0.02 1.44 16 40 H 0.07 1.81 6.66 -2.39 -0.02 1.79 16 41 H 0.07 2.02 5.81 -2.39 -0.01 2.01 16 42 H 0.07 1.56 7.80 -2.39 -0.02 1.55 16 43 H 0.06 1.56 6.21 -2.39 -0.01 1.55 16 44 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -57.02 337.65 6.87 -50.15 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.01 Total: 15.23 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 3.34 Total: -30.13 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -1.74 Total: -68.22 kcal Atomic # 9 Polarization: -14.21 SS G_CDS: 2.24 Total: -11.96 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -57.02 6.87 -50.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602827165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.267 kcal (2) G-P(sol) polarization free energy of solvation -57.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds