Wall clock time and date at job start Tue Mar 31 2020 10:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.46847 * 2 1 4 4 C 1.34233 * 116.99679 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00066 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99591 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.47429 * 300.00030 * 6 4 3 8 8 C 1.53007 * 109.46852 * 60.00149 * 6 4 3 9 9 C 1.50703 * 109.46640 * 185.00024 * 8 6 4 10 10 C 1.38234 * 120.00257 * 90.00059 * 9 8 6 11 11 C 1.38238 * 119.99675 * 180.27927 * 10 9 8 12 12 C 1.38228 * 120.00120 * 359.47825 * 11 10 9 13 13 C 1.38234 * 120.00000 * 0.52176 * 12 11 10 14 14 C 1.38234 * 119.99503 * 270.01660 * 9 8 6 15 15 N 1.46897 * 109.46703 * 179.97438 * 6 4 3 16 16 C 1.46891 * 111.00187 * 85.00289 * 15 6 4 17 17 H 1.09004 * 109.47185 * 34.99868 * 16 15 6 18 18 C 1.52999 * 109.47269 * 274.99744 * 16 15 6 19 19 C 1.53000 * 109.47453 * 154.99747 * 16 15 6 20 20 C 1.50700 * 109.47130 * 294.99985 * 19 16 15 21 21 H 1.08002 * 119.99974 * 359.97438 * 20 19 16 22 22 C 1.37879 * 120.00129 * 179.97438 * 20 19 16 23 23 N 1.31508 * 119.99947 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99934 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47436 * 60.00070 * 24 22 20 26 26 H 1.48504 * 109.47079 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47130 * 299.99859 * 24 22 20 28 28 H 1.08993 * 109.47210 * 300.00166 * 1 2 3 29 29 H 1.09000 * 109.47016 * 60.00245 * 1 2 3 30 30 H 1.09002 * 109.46789 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47275 * 239.99986 * 2 1 3 32 32 H 1.09000 * 109.47016 * 119.99755 * 2 1 3 33 33 H 1.08988 * 109.47457 * 64.99549 * 8 6 4 34 34 H 1.09000 * 109.46671 * 304.99320 * 8 6 4 35 35 H 1.08002 * 119.99744 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.99577 * 179.72816 * 11 10 9 37 37 H 1.07999 * 119.99932 * 180.24104 * 12 11 10 38 38 H 1.08001 * 120.00310 * 179.72161 * 13 12 11 39 39 H 1.07997 * 120.00460 * 0.02562 * 14 9 8 40 40 H 1.00899 * 111.00166 * 321.04191 * 15 6 4 41 41 H 1.09001 * 109.46933 * 59.99960 * 18 16 15 42 42 H 1.08996 * 109.47218 * 179.97438 * 18 16 15 43 43 H 1.09004 * 109.47119 * 300.00165 * 18 16 15 44 44 H 1.08999 * 109.47128 * 54.99953 * 19 16 15 45 45 H 1.09003 * 109.47408 * 175.00046 * 19 16 15 46 46 H 0.96999 * 120.00514 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5844 3.4694 -0.8911 8 6 3.4495 3.6848 1.2481 9 6 3.9235 5.1140 1.1871 10 6 3.1327 6.0798 0.5933 11 6 3.5702 7.3897 0.5323 12 6 4.7936 7.7358 1.0746 13 6 5.5845 6.7700 1.6684 14 6 5.1494 5.4590 1.7248 15 7 5.3876 2.8606 -0.0010 16 6 5.9072 2.7131 -1.3671 17 1 5.2802 3.2778 -2.0572 18 6 5.8953 1.2346 -1.7604 19 6 7.3403 3.2455 -1.4280 20 6 7.3370 4.7286 -1.1607 21 1 6.4058 5.2404 -0.9672 22 6 8.5227 5.4322 -1.1632 23 7 9.6566 4.8090 -1.3983 24 14 8.5187 7.2704 -0.8312 25 1 7.9511 7.5288 0.5165 26 1 9.9098 7.7870 -0.8892 27 1 7.6921 7.9568 -1.8563 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8597 3.2034 2.1358 34 1 2.3606 3.6648 1.2943 35 1 2.1752 5.8100 0.1727 36 1 2.9542 8.1435 0.0644 37 1 5.1336 8.7599 1.0304 38 1 6.5424 7.0395 2.0882 39 1 5.7676 4.7044 2.1881 40 1 5.7104 2.1105 0.5916 41 1 4.8743 0.8554 -1.7171 42 1 6.2804 1.1252 -2.7742 43 1 6.5222 0.6700 -1.0703 44 1 7.9472 2.7421 -0.6755 45 1 7.7567 3.0556 -2.4172 46 1 10.4908 5.3040 -1.4005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602935488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:04 Heat of formation + Delta-G solvation = -69.701085 kcal Electronic energy + Delta-G solvation = -26185.751096 eV Core-core repulsion = 22654.035051 eV Total energy + Delta-G solvation = -3531.716045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66858 -38.79135 -37.34802 -35.86404 -33.87245 -32.23728 -31.78935 -30.35821 -30.15203 -27.36579 -27.01176 -24.74999 -23.11903 -22.66819 -22.05254 -20.95746 -20.28016 -19.78940 -17.64316 -16.86578 -16.55852 -16.15474 -16.02479 -15.13454 -14.78051 -14.60340 -14.32089 -14.08074 -13.68798 -13.45011 -13.04306 -12.92403 -12.64753 -12.61742 -12.55681 -12.28895 -12.04771 -11.87705 -11.68157 -11.59305 -11.37213 -11.08703 -10.88549 -10.75341 -10.65927 -10.54644 -10.40669 -10.29784 -10.14069 -9.95639 -9.17351 -8.92776 -8.32528 -8.19146 -8.14902 -7.82766 -5.80810 -3.77678 1.83427 1.98883 2.31355 2.74662 3.43903 3.48639 3.51599 4.30177 4.52629 4.62829 4.74746 4.75783 4.85822 5.09327 5.17606 5.27021 5.32887 5.44437 5.49700 5.54986 5.56572 5.58045 5.66809 5.76255 5.79803 5.89009 5.97981 6.07263 6.11688 6.17230 6.22058 6.39262 6.53105 6.57053 6.59564 6.81326 6.94904 7.07156 7.09511 7.18331 7.42423 7.55437 7.68556 7.85299 8.01041 8.02869 8.19969 8.66050 9.28277 9.83629 11.31395 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.005396 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.662116 B = 5188.217557 C = 6840.757255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.360 6.360 4 C 0.427 3.573 5 O -0.499 6.499 6 C 0.103 3.897 7 H 0.113 0.887 8 C -0.059 4.059 9 C -0.070 4.070 10 C -0.123 4.123 11 C -0.128 4.128 12 C -0.126 4.126 13 C -0.110 4.110 14 C -0.065 4.065 15 N -0.624 5.624 16 C 0.086 3.914 17 H 0.063 0.937 18 C -0.179 4.179 19 C 0.035 3.965 20 C -0.481 4.481 21 H 0.062 0.938 22 C 0.052 3.948 23 N -0.906 5.906 24 Si 0.879 3.121 25 H -0.267 1.267 26 H -0.296 1.296 27 H -0.282 1.282 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.344 0.656 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.668 -3.802 5.435 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.276 6.276 4 C 0.268 3.732 5 O -0.386 6.386 6 C -0.010 4.010 7 H 0.130 0.870 8 C -0.097 4.097 9 C -0.070 4.070 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.144 4.144 13 C -0.128 4.128 14 C -0.083 4.083 15 N -0.254 5.254 16 C -0.023 4.023 17 H 0.081 0.919 18 C -0.237 4.237 19 C -0.002 4.002 20 C -0.519 4.519 21 H 0.080 0.920 22 C -0.147 4.147 23 N -0.548 5.548 24 Si 0.708 3.292 25 H -0.192 1.192 26 H -0.222 1.222 27 H -0.208 1.208 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.178 -3.405 5.438 18.337 hybrid contribution 0.126 -0.145 -0.284 0.343 sum -17.052 -3.549 5.154 18.164 Atomic orbital electron populations 1.21790 0.92894 1.02695 1.03456 1.22964 0.95206 0.81120 1.02298 1.86580 1.25408 1.31672 1.83989 1.25830 0.80313 0.94986 0.72060 1.90651 1.60081 1.43302 1.44605 1.21792 0.90661 0.87221 1.01370 0.86974 1.20484 1.00242 0.92544 0.96449 1.19407 0.95051 0.93644 0.98873 1.20877 0.99623 0.93113 1.00489 1.20915 0.96694 0.96208 1.00836 1.21028 0.94976 0.99146 0.99255 1.21159 0.98832 0.93542 0.99300 1.20912 0.94232 0.95562 0.97568 1.61023 1.01428 1.50350 1.12644 1.21948 1.00651 0.92720 0.86943 0.91923 1.22721 1.01232 0.98756 1.01027 1.19092 0.87987 0.96304 0.96828 1.21115 0.92821 0.92750 1.45250 0.92014 1.24951 0.95827 0.97639 0.96255 1.69959 0.97734 1.35561 1.51520 0.86878 0.76223 0.86717 0.79398 1.19221 1.22209 1.20776 0.91512 0.91544 0.90559 0.91581 0.91512 0.90740 0.90238 0.86882 0.87006 0.87204 0.86566 0.85911 0.83503 0.93166 0.93445 0.92899 0.96490 0.96495 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.59 10.03 -39.26 -0.39 -4.99 16 4 C 0.43 6.24 6.54 36.01 0.24 6.48 16 5 O -0.50 -8.35 12.16 -18.75 -0.23 -8.58 16 6 C 0.10 1.54 2.49 -68.86 -0.17 1.37 16 7 H 0.11 1.71 7.43 -51.93 -0.39 1.32 16 8 C -0.06 -0.78 4.99 -27.88 -0.14 -0.92 16 9 C -0.07 -1.06 4.95 -104.62 -0.52 -1.58 16 10 C -0.12 -1.78 9.70 -39.58 -0.38 -2.16 16 11 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 12 C -0.13 -2.06 10.05 -39.59 -0.40 -2.46 16 13 C -0.11 -1.95 9.59 -39.58 -0.38 -2.33 16 14 C -0.06 -1.11 9.31 -39.58 -0.37 -1.47 16 15 N -0.62 -11.22 5.11 -100.96 -0.52 -11.74 16 16 C 0.09 1.75 2.53 -67.72 -0.17 1.58 16 17 H 0.06 1.29 7.43 -51.93 -0.39 0.91 16 18 C -0.18 -3.33 8.00 37.16 0.30 -3.04 16 19 C 0.04 0.89 4.65 -27.88 -0.13 0.76 16 20 C -0.48 -13.13 8.84 -34.44 -0.30 -13.44 16 21 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 22 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 23 N -0.91 -27.48 13.29 55.43 0.74 -26.74 16 24 Si 0.88 21.80 29.54 -169.99 -5.02 16.78 16 25 H -0.27 -6.18 5.87 56.52 0.33 -5.85 16 26 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 33 H 0.07 0.95 8.08 -51.94 -0.42 0.53 16 34 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 35 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.12 2.07 7.33 -52.49 -0.38 1.68 16 39 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.34 6.24 7.51 -39.29 -0.30 5.94 16 41 H 0.05 0.90 5.07 -51.93 -0.26 0.63 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -30.97 376.16 -9.72 -40.69 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.65 Total: 6.93 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -2.31 Total: -18.03 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.22 Total: -38.48 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.62 Total: -13.57 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.97 -9.72 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602935488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.006 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds