Wall clock time and date at job start Tue Mar 31 2020 08:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.50705 * 109.47066 * 269.99622 * 4 3 2 6 6 H 1.08001 * 119.99987 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00127 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00037 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47380 * 89.99525 * 9 7 5 11 11 H 1.48502 * 109.46914 * 210.00057 * 9 7 5 12 12 H 1.48507 * 109.46856 * 329.99469 * 9 7 5 13 13 C 1.34777 * 119.99832 * 89.99461 * 3 2 1 14 14 O 1.21278 * 119.99854 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00161 * 0.02562 * 13 3 2 16 16 C 1.53000 * 109.46912 * 179.97438 * 15 13 3 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 13 18 18 C 1.34510 * 125.78886 * 89.72067 * 17 16 15 19 19 C 1.41384 * 106.84002 * 179.89033 * 18 17 16 20 20 C 1.34518 * 106.83852 * 0.36937 * 19 18 17 21 21 C 1.50706 * 125.78706 * 179.75414 * 20 19 18 22 22 H 1.09002 * 115.55073 * 25.58083 * 21 20 19 23 23 C 1.52998 * 117.49582 * 171.25311 * 21 20 19 24 24 C 1.53005 * 117.49501 * 239.91190 * 21 20 19 25 25 H 1.08996 * 117.49636 * 145.02413 * 24 21 20 26 26 C 1.52996 * 117.50084 * 0.02562 * 24 21 20 27 27 O 1.34295 * 108.42175 * 359.77186 * 20 19 18 28 28 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 29 29 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 31 31 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 32 32 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 33 33 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 34 34 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 35 35 H 0.97001 * 119.99958 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46980 * 59.99654 * 15 13 3 37 37 H 1.08992 * 109.47158 * 299.99760 * 15 13 3 38 38 H 1.09002 * 109.47398 * 300.00078 * 16 15 13 39 39 H 1.09001 * 109.47194 * 60.00258 * 16 15 13 40 40 H 1.07994 * 126.58284 * 0.02562 * 18 17 16 41 41 H 1.08004 * 126.58094 * 180.12078 * 19 18 17 42 42 H 1.09002 * 117.49489 * 214.97505 * 23 21 20 43 43 H 1.09000 * 117.50114 * 359.97438 * 23 21 20 44 44 H 1.08996 * 109.47022 * 59.99603 * 26 24 21 45 45 H 1.09001 * 109.47264 * 180.02562 * 26 24 21 46 46 H 1.09002 * 109.46986 * 300.00391 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 5.3912 2.1825 -3.2577 9 14 3.0130 3.4350 -3.9292 10 1 3.1163 4.8553 -3.5082 11 1 3.4060 3.3117 -5.3560 12 1 1.6132 2.9689 -3.7593 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 6 2.3240 2.2433 3.6352 17 6 2.0726 1.5329 4.9404 18 6 2.9685 0.7938 5.6189 19 6 2.3141 0.3206 6.7794 20 6 1.0550 0.7922 6.7364 21 6 -0.0163 0.5397 7.7659 22 1 0.3410 0.3169 8.7713 23 6 -1.3192 1.3315 7.6384 24 6 -1.2938 -0.1609 7.2987 25 1 -1.7772 -0.8441 7.9970 26 6 -1.3856 -0.5520 5.8225 27 8 0.9145 1.5258 5.6204 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1410 -1.1384 35 1 5.7173 2.5730 -4.0836 36 1 2.6227 0.4187 2.5299 37 1 0.9444 1.0115 2.5302 38 1 3.3719 2.5375 3.5772 39 1 1.6937 3.1308 3.5778 40 1 3.9919 0.6007 5.3332 41 1 2.7417 -0.3035 7.5502 42 1 -1.8193 1.6294 8.5600 43 1 -1.4014 2.0354 6.8102 44 1 -0.5748 -1.2379 5.5772 45 1 -2.3429 -1.0382 5.6342 46 1 -1.3047 0.3420 5.2041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:57 Heat of formation + Delta-G solvation = -8.997620 kcal Electronic energy + Delta-G solvation = -24907.155828 eV Core-core repulsion = 21378.072082 eV Total energy + Delta-G solvation = -3529.083746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.68551 -39.24581 -38.03448 -35.48405 -33.90636 -32.89787 -32.58228 -30.36193 -29.50915 -28.58814 -27.50952 -24.89904 -22.97712 -22.57084 -21.96326 -21.66770 -20.73799 -19.79251 -18.30687 -17.01975 -16.87942 -16.38881 -16.09955 -15.73894 -15.38662 -15.19505 -14.48147 -14.13897 -13.48304 -13.46322 -13.40103 -13.25130 -13.16516 -12.88834 -12.66898 -12.52505 -12.20121 -12.12402 -12.04784 -12.01195 -11.76455 -11.69169 -11.37989 -11.05817 -10.93404 -10.85072 -10.62996 -10.48832 -10.35274 -10.15398 -9.84475 -9.54062 -9.05202 -8.58575 -8.19891 -7.72680 -6.08436 -4.07095 1.60256 2.53587 2.76951 3.29351 3.33625 3.35323 3.37226 3.52593 3.82853 4.20250 4.36249 4.39894 4.53458 4.70393 4.98381 5.00194 5.03311 5.08892 5.17243 5.23607 5.26056 5.33294 5.36532 5.45786 5.53146 5.54400 5.61969 5.63712 5.74137 5.75461 5.81369 5.84556 5.95934 6.00565 6.07614 6.09702 6.14962 6.21764 6.40772 6.51680 6.71676 6.95284 7.17874 7.34941 7.61664 8.25124 8.47326 8.92483 8.98241 9.52012 11.04994 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.002916 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.814199 B = 9600.982494 C =10087.672598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.592 5.592 4 C 0.216 3.784 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.542 6.542 15 C -0.135 4.135 16 C -0.025 4.025 17 C 0.000 4.000 18 C -0.209 4.209 19 C -0.203 4.203 20 C 0.014 3.986 21 C -0.081 4.081 22 H 0.131 0.869 23 C -0.168 4.168 24 C -0.139 4.139 25 H 0.111 0.889 26 C -0.126 4.126 27 O -0.171 6.171 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.800 -7.382 20.784 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.324 5.324 4 C 0.095 3.905 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.420 6.420 15 C -0.175 4.175 16 C -0.062 4.062 17 C -0.050 4.050 18 C -0.229 4.229 19 C -0.222 4.222 20 C -0.036 4.036 21 C -0.099 4.099 22 H 0.149 0.851 23 C -0.205 4.205 24 C -0.157 4.157 25 H 0.129 0.871 26 C -0.183 4.183 27 O -0.068 6.068 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.715 -6.587 20.506 25.534 hybrid contribution -0.144 0.280 -0.537 0.623 sum -13.859 -6.307 19.969 25.112 Atomic orbital electron populations 1.22229 0.96798 1.01582 1.02206 1.21449 0.93379 0.83839 1.03154 1.47938 1.63990 1.13393 1.07047 1.19646 0.97291 0.93394 0.80163 1.21333 0.95348 1.32860 1.07101 0.90771 1.24859 0.95001 0.95820 0.97361 1.69899 1.15145 1.45029 1.23578 0.86850 0.81464 0.81619 0.79749 1.19903 1.21088 1.19087 1.20256 0.78226 0.86887 0.85097 1.90674 1.45797 1.18222 1.87289 1.21705 1.03579 0.99741 0.92509 1.19900 1.04450 0.97018 0.84864 1.22540 0.83621 1.02501 0.96376 1.21587 1.01312 1.03322 0.96633 1.21440 0.93811 1.06036 1.00888 1.21182 0.95730 0.98238 0.88473 1.20576 0.86309 1.06828 0.96140 0.85084 1.23209 0.98810 0.94539 1.03952 1.22516 0.99062 0.95448 0.98703 0.87069 1.21381 1.01838 1.02029 0.93013 1.83931 1.35526 1.57397 1.29932 0.92253 0.91988 0.92962 0.89747 0.91307 0.95303 0.94599 0.92575 0.88876 0.89293 0.87813 0.89442 0.83397 0.83783 0.88105 0.88010 0.92051 0.91981 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.02 2.46 -175.06 -0.43 -12.45 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 9 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.51 10.12 7.67 -10.98 -0.08 10.03 16 14 O -0.54 -13.04 15.56 5.56 0.09 -12.95 16 15 C -0.14 -1.95 4.23 -27.88 -0.12 -2.06 16 16 C -0.02 -0.35 5.04 -27.88 -0.14 -0.49 16 17 C 0.00 -0.01 6.57 -35.62 -0.23 -0.24 16 18 C -0.21 -2.57 10.81 -39.70 -0.43 -2.99 16 19 C -0.20 -2.27 10.81 -39.70 -0.43 -2.70 16 20 C 0.01 0.15 5.90 -35.62 -0.21 -0.06 16 21 C -0.08 -0.68 6.24 -91.77 -0.57 -1.25 16 22 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.17 -1.29 9.82 -26.69 -0.26 -1.56 16 24 C -0.14 -1.04 6.41 -90.58 -0.58 -1.62 16 25 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 26 C -0.13 -1.06 9.15 37.16 0.34 -0.72 16 27 O -0.17 -2.22 9.63 5.72 0.06 -2.16 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 31 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.07 0.90 6.44 -51.93 -0.33 0.57 16 33 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 34 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.09 1.23 7.40 -51.93 -0.38 0.84 16 37 H 0.09 1.12 7.19 -51.93 -0.37 0.75 16 38 H 0.10 1.50 8.10 -51.93 -0.42 1.08 16 39 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 40 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.92 7.88 -51.93 -0.41 0.51 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.61 7.27 -51.93 -0.38 0.23 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -34.00 379.40 -8.93 -42.92 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.63 Total: 1.02 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.83 Total: -12.07 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.34 Total: -39.44 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.14 Total: -15.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.00 -8.93 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.924 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds