Wall clock time and date at job start Tue Mar 31 2020 08:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.50705 * 109.47066 * 269.99622 * 4 3 2 6 6 H 1.08001 * 119.99987 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00127 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00037 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47380 * 89.99525 * 9 7 5 11 11 H 1.48502 * 109.46914 * 210.00057 * 9 7 5 12 12 H 1.48507 * 109.46856 * 329.99469 * 9 7 5 13 13 C 1.34777 * 119.99832 * 89.99461 * 3 2 1 14 14 O 1.21278 * 119.99854 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00161 * 0.02562 * 13 3 2 16 16 C 1.53000 * 109.46912 * 179.97438 * 15 13 3 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 13 18 18 C 1.34510 * 125.78886 * 89.72067 * 17 16 15 19 19 C 1.41384 * 106.84002 * 179.89033 * 18 17 16 20 20 C 1.34518 * 106.83852 * 0.36937 * 19 18 17 21 21 C 1.50706 * 125.78706 * 179.75414 * 20 19 18 22 22 H 1.09002 * 115.55073 * 25.58083 * 21 20 19 23 23 C 1.52998 * 117.49582 * 171.25311 * 21 20 19 24 24 C 1.53005 * 117.49501 * 239.91190 * 21 20 19 25 25 H 1.08996 * 117.49636 * 145.02413 * 24 21 20 26 26 C 1.52996 * 117.50084 * 0.02562 * 24 21 20 27 27 O 1.34295 * 108.42175 * 359.77186 * 20 19 18 28 28 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 29 29 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 31 31 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 32 32 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 33 33 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 34 34 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 35 35 H 0.97001 * 119.99958 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46980 * 59.99654 * 15 13 3 37 37 H 1.08992 * 109.47158 * 299.99760 * 15 13 3 38 38 H 1.09002 * 109.47398 * 300.00078 * 16 15 13 39 39 H 1.09001 * 109.47194 * 60.00258 * 16 15 13 40 40 H 1.07994 * 126.58284 * 0.02562 * 18 17 16 41 41 H 1.08004 * 126.58094 * 180.12078 * 19 18 17 42 42 H 1.09002 * 117.49489 * 214.97505 * 23 21 20 43 43 H 1.09000 * 117.50114 * 359.97438 * 23 21 20 44 44 H 1.08996 * 109.47022 * 59.99603 * 26 24 21 45 45 H 1.09001 * 109.47264 * 180.02562 * 26 24 21 46 46 H 1.09002 * 109.46986 * 300.00391 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 5.3912 2.1825 -3.2577 9 14 3.0130 3.4350 -3.9292 10 1 3.1163 4.8553 -3.5082 11 1 3.4060 3.3117 -5.3560 12 1 1.6132 2.9689 -3.7593 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 6 2.3240 2.2433 3.6352 17 6 2.0726 1.5329 4.9404 18 6 2.9685 0.7938 5.6189 19 6 2.3141 0.3206 6.7794 20 6 1.0550 0.7922 6.7364 21 6 -0.0163 0.5397 7.7659 22 1 0.3410 0.3169 8.7713 23 6 -1.3192 1.3315 7.6384 24 6 -1.2938 -0.1609 7.2987 25 1 -1.7772 -0.8441 7.9970 26 6 -1.3856 -0.5520 5.8225 27 8 0.9145 1.5258 5.6204 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0957 3.1410 -1.1384 35 1 5.7173 2.5730 -4.0836 36 1 2.6227 0.4187 2.5299 37 1 0.9444 1.0115 2.5302 38 1 3.3719 2.5375 3.5772 39 1 1.6937 3.1308 3.5778 40 1 3.9919 0.6007 5.3332 41 1 2.7417 -0.3035 7.5502 42 1 -1.8193 1.6294 8.5600 43 1 -1.4014 2.0354 6.8102 44 1 -0.5748 -1.2379 5.5772 45 1 -2.3429 -1.0382 5.6342 46 1 -1.3047 0.3420 5.2041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:56 Heat of formation + Delta-G solvation = -28.030597 kcal Electronic energy + Delta-G solvation = -24907.981159 eV Core-core repulsion = 21378.072082 eV Total energy + Delta-G solvation = -3529.909077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.59605 -40.82903 -38.65481 -37.08182 -35.19859 -34.69653 -33.75439 -31.89595 -30.52725 -29.63662 -28.87783 -26.17276 -24.41284 -23.85703 -22.84973 -22.77415 -21.50711 -20.62528 -19.84481 -19.11255 -18.23131 -17.38018 -17.13611 -16.94900 -16.70105 -16.39041 -16.02066 -15.45271 -14.80698 -14.74485 -14.64639 -14.38354 -14.12030 -14.02123 -13.76934 -13.70660 -13.40316 -13.38506 -13.29079 -13.11928 -13.01788 -12.72607 -12.53706 -12.38969 -12.33752 -12.18258 -12.03238 -11.82156 -11.74685 -11.49242 -10.95456 -10.83999 -10.78213 -10.64844 -9.43169 -9.09527 -8.34713 -6.39629 0.69819 1.31722 1.35829 1.44138 1.63666 1.76713 1.87574 2.30104 2.34544 2.91595 2.99634 3.43419 3.62716 3.78335 3.87822 3.94385 4.01438 4.07461 4.15937 4.18992 4.35958 4.40496 4.45876 4.51474 4.61114 4.71054 4.77570 4.81442 4.88169 4.90182 4.91236 4.93348 4.96723 4.98882 5.00919 5.07286 5.16501 5.17892 5.22613 5.37483 5.43545 5.46329 5.63556 5.64819 6.23244 6.26308 6.61636 6.69111 7.20656 7.39756 8.82264 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.002916 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.814199 B = 9600.982494 C =10087.672598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.600 5.600 4 C 0.225 3.775 5 C -0.535 4.535 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.499 3.501 14 O -0.594 6.594 15 C -0.117 4.117 16 C -0.017 4.017 17 C -0.020 4.020 18 C -0.210 4.210 19 C -0.213 4.213 20 C 0.014 3.986 21 C -0.092 4.092 22 H 0.155 0.845 23 C -0.169 4.169 24 C -0.132 4.132 25 H 0.136 0.864 26 C -0.127 4.127 27 O -0.183 6.183 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.018 0.982 35 H 0.268 0.732 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.506 -8.762 22.329 29.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.331 5.331 4 C 0.102 3.898 5 C -0.574 4.574 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.288 3.712 14 O -0.475 6.475 15 C -0.157 4.157 16 C -0.055 4.055 17 C -0.069 4.069 18 C -0.229 4.229 19 C -0.232 4.232 20 C -0.036 4.036 21 C -0.110 4.110 22 H 0.173 0.827 23 C -0.206 4.206 24 C -0.150 4.150 25 H 0.154 0.846 26 C -0.184 4.184 27 O -0.081 6.081 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.174 0.826 41 H 0.184 0.816 42 H 0.141 0.859 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.449 -8.020 22.069 28.669 hybrid contribution 0.758 0.644 -0.928 1.360 sum -15.691 -7.376 21.141 27.341 Atomic orbital electron populations 1.22154 0.94050 1.03628 1.02029 1.21776 0.95567 0.81126 1.03968 1.48072 1.63966 1.15187 1.05855 1.19297 0.94811 0.93027 0.82648 1.21566 0.97062 1.32066 1.06702 0.95230 1.25845 0.96711 0.97197 0.98955 1.70049 1.17406 1.46590 1.24508 0.85726 0.80459 0.79021 0.77820 1.20195 1.19943 1.16197 1.21214 0.76851 0.86512 0.86579 1.90640 1.48030 1.20673 1.88157 1.21633 1.05396 0.99485 0.89162 1.19695 1.03479 0.96731 0.85611 1.22274 0.84312 1.03804 0.96535 1.21830 1.01569 1.02647 0.96879 1.21736 0.93823 1.06533 1.01107 1.21826 0.96728 0.96978 0.88064 1.20854 0.86009 1.07754 0.96355 0.82745 1.23252 0.98541 0.94446 1.04318 1.22629 0.98180 0.95703 0.98480 0.84610 1.21388 1.02339 1.01113 0.93594 1.83921 1.35501 1.57990 1.30680 0.93412 0.88777 0.92164 0.90891 0.88651 0.93450 0.96414 0.92264 0.87125 0.86777 0.89048 0.90549 0.82633 0.81583 0.85926 0.89870 0.92817 0.90566 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 10.24 71.98 0.74 -2.86 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -24.37 2.46 -826.15 -2.03 -26.40 16 4 C 0.22 11.05 4.23 85.64 0.36 11.42 16 5 C -0.54 -31.80 9.94 25.60 0.25 -31.54 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 7 C 0.01 0.65 5.47 84.65 0.46 1.11 16 8 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 9 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 13 C 0.50 20.11 7.67 87.66 0.67 20.78 16 14 O -0.59 -29.68 15.56 -3.02 -0.05 -29.73 16 15 C -0.12 -3.28 4.23 29.85 0.13 -3.16 16 16 C -0.02 -0.49 5.04 29.85 0.15 -0.34 16 17 C -0.02 -0.51 6.57 24.83 0.16 -0.34 16 18 C -0.21 -4.94 10.81 22.19 0.24 -4.70 16 19 C -0.21 -4.38 10.81 22.19 0.24 -4.14 16 20 C 0.01 0.29 5.90 24.84 0.15 0.43 16 21 C -0.09 -1.31 6.24 -11.54 -0.07 -1.38 16 22 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 23 C -0.17 -2.22 9.82 30.62 0.30 -1.92 16 24 C -0.13 -1.60 6.41 -10.77 -0.07 -1.67 16 25 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 26 C -0.13 -1.89 9.15 71.98 0.66 -1.23 16 27 O -0.18 -4.63 9.63 -2.44 -0.02 -4.66 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.26 7.22 -2.39 -0.02 1.25 16 31 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.10 2.27 6.44 -2.39 -0.02 2.26 16 33 H 0.05 2.15 7.13 -2.39 -0.02 2.14 16 34 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 35 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.11 2.74 7.40 -2.39 -0.02 2.72 16 37 H 0.11 2.65 7.19 -2.39 -0.02 2.63 16 38 H 0.09 2.77 8.10 -2.39 -0.02 2.75 16 39 H 0.08 2.30 8.10 -2.39 -0.02 2.28 16 40 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.42 7.88 -2.39 -0.02 1.40 16 44 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.04 0.81 7.27 -2.39 -0.02 0.79 16 Total: -1.00 -77.58 379.40 5.86 -71.72 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.89 Total: 18.39 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.89 Total: -16.17 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -1.73 Total: -86.34 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.07 Total: -34.38 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -77.58 5.86 -71.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.689 kcal (2) G-P(sol) polarization free energy of solvation -77.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds