Wall clock time and date at job start Tue Mar 31 2020 08:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47176 * 2 1 4 4 C 1.46501 * 119.99505 * 270.00146 * 3 2 1 5 5 C 1.50704 * 109.46859 * 269.99596 * 4 3 2 6 6 H 1.08001 * 119.99841 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00049 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99747 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46922 * 90.00495 * 9 7 5 11 11 H 1.48504 * 109.47143 * 210.00273 * 9 7 5 12 12 H 1.48498 * 109.47438 * 330.00125 * 9 7 5 13 13 C 1.34771 * 120.00048 * 89.99856 * 3 2 1 14 14 O 1.21284 * 119.99606 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00404 * 359.97438 * 13 3 2 16 16 C 1.52998 * 109.47340 * 180.02562 * 15 13 3 17 17 C 1.50699 * 109.47019 * 180.02562 * 16 15 13 18 18 C 1.34518 * 125.79172 * 90.00030 * 17 16 15 19 19 C 1.41383 * 106.84198 * 180.02562 * 18 17 16 20 20 C 1.34522 * 106.83827 * 0.02562 * 19 18 17 21 21 C 1.50697 * 125.78503 * 179.97438 * 20 19 18 22 22 H 1.09001 * 115.55460 * 334.27660 * 21 20 19 23 23 C 1.53006 * 117.49508 * 188.61069 * 21 20 19 24 24 C 1.52997 * 117.49950 * 119.99064 * 21 20 19 25 25 H 1.09002 * 117.49910 * 359.97438 * 24 21 20 26 26 C 1.53001 * 117.49889 * 214.97967 * 24 21 20 27 27 O 1.34295 * 108.42213 * 0.26210 * 20 19 18 28 28 H 1.09007 * 109.47055 * 300.00275 * 1 2 3 29 29 H 1.08995 * 109.46954 * 60.00369 * 1 2 3 30 30 H 1.09004 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47141 * 239.99404 * 2 1 3 32 32 H 1.09008 * 109.47011 * 119.99815 * 2 1 3 33 33 H 1.08992 * 109.47346 * 29.99610 * 4 3 2 34 34 H 1.09000 * 109.46619 * 150.00339 * 4 3 2 35 35 H 0.97001 * 119.99842 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46614 * 60.00219 * 15 13 3 37 37 H 1.09000 * 109.47423 * 300.00444 * 15 13 3 38 38 H 1.08994 * 109.46935 * 60.00276 * 16 15 13 39 39 H 1.09008 * 109.47118 * 300.00198 * 16 15 13 40 40 H 1.07995 * 126.57681 * 0.05743 * 18 17 16 41 41 H 1.07992 * 126.58148 * 180.02562 * 19 18 17 42 42 H 1.08990 * 117.50086 * 359.97438 * 23 21 20 43 43 H 1.09004 * 117.49623 * 145.02605 * 23 21 20 44 44 H 1.08998 * 109.46673 * 299.97655 * 26 24 21 45 45 H 1.08994 * 109.47426 * 59.98444 * 26 24 21 46 46 H 1.09000 * 109.47070 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0961 7 6 4.1494 2.3903 -2.8775 8 7 5.3914 2.1832 -3.2573 9 14 3.0130 3.4357 -3.9288 10 1 3.1157 4.8559 -3.5071 11 1 3.4067 3.3133 -5.3555 12 1 1.6135 2.9690 -3.7598 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3065 2.4723 16 6 2.3222 2.2441 3.6352 17 6 2.0710 1.5337 4.9403 18 6 2.9688 0.7995 5.6218 19 6 2.3129 0.3215 6.7795 20 6 1.0533 0.7918 6.7359 21 6 -0.0181 0.5383 7.7648 22 1 0.0934 -0.3785 8.3437 23 6 -1.4400 0.9946 7.4313 24 6 -0.6177 1.7539 8.4746 25 1 -0.2370 2.7370 8.1975 26 6 -1.0147 1.5898 9.9430 27 8 0.9108 1.5203 5.6167 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 5.7174 2.5737 -4.0833 36 1 2.6212 0.4187 2.5302 37 1 0.9432 1.0127 2.5299 38 1 1.6920 3.1315 3.5770 39 1 3.3703 2.5383 3.5778 40 1 3.9940 0.6116 5.3391 41 1 2.7409 -0.3015 7.5508 42 1 -1.6003 1.4785 6.4679 43 1 -2.2638 0.3782 7.7912 44 1 -1.7667 0.8056 10.0306 45 1 -0.1365 1.3184 10.5287 46 1 -1.4238 2.5288 10.3159 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:04 Heat of formation + Delta-G solvation = -10.146796 kcal Electronic energy + Delta-G solvation = -24460.735748 eV Core-core repulsion = 20931.602170 eV Total energy + Delta-G solvation = -3529.133578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -42.67621 -39.24194 -38.05528 -35.48119 -33.92710 -32.90777 -32.59112 -30.37716 -29.85978 -28.46602 -27.38974 -24.85882 -22.97172 -22.57185 -21.86488 -21.54351 -21.00843 -19.92074 -18.30225 -17.22068 -16.91923 -16.43779 -16.08172 -15.45707 -15.30980 -14.92797 -14.65766 -14.13574 -13.86615 -13.47545 -13.43264 -13.37185 -13.13522 -12.85631 -12.58862 -12.51675 -12.23690 -12.15778 -12.11246 -12.01480 -11.82452 -11.69313 -11.37594 -11.06104 -10.93207 -10.88203 -10.63106 -10.48584 -10.42522 -10.15211 -9.85708 -9.53812 -9.04861 -8.58367 -8.20533 -7.72401 -6.08170 -4.06756 1.58616 2.51778 2.76053 3.29521 3.33938 3.35491 3.37391 3.50369 3.82911 4.14651 4.40055 4.42699 4.48303 4.67751 4.90782 4.99491 5.01442 5.08661 5.17274 5.23225 5.26463 5.27398 5.33276 5.36351 5.41427 5.53927 5.62338 5.62789 5.66260 5.74473 5.81007 5.83337 5.90326 5.99756 6.02347 6.09284 6.15335 6.20258 6.41389 6.50576 6.72001 6.95530 7.16269 7.35217 7.61897 8.25401 8.47574 8.92710 8.98469 9.52245 11.05193 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.002573 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.733154 B =10878.859425 C =11140.211100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.592 5.592 4 C 0.215 3.785 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.542 6.542 15 C -0.136 4.136 16 C -0.025 4.025 17 C 0.000 4.000 18 C -0.210 4.210 19 C -0.201 4.201 20 C 0.008 3.992 21 C -0.077 4.077 22 H 0.132 0.868 23 C -0.166 4.166 24 C -0.142 4.142 25 H 0.107 0.893 26 C -0.123 4.123 27 O -0.173 6.173 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.543 -6.369 22.400 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.324 5.324 4 C 0.095 3.905 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.420 6.420 15 C -0.176 4.176 16 C -0.062 4.062 17 C -0.050 4.050 18 C -0.229 4.229 19 C -0.220 4.220 20 C -0.042 4.042 21 C -0.095 4.095 22 H 0.150 0.850 23 C -0.203 4.203 24 C -0.160 4.160 25 H 0.125 0.875 26 C -0.180 4.180 27 O -0.070 6.070 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.461 -5.577 22.130 26.496 hybrid contribution -0.156 0.234 -0.686 0.741 sum -13.617 -5.342 21.444 25.958 Atomic orbital electron populations 1.22233 0.96795 1.01590 1.02207 1.21452 0.93385 0.83832 1.03161 1.47938 1.63973 1.13404 1.07046 1.19651 0.97306 0.93396 0.80161 1.21328 0.95328 1.32818 1.07121 0.90772 1.24864 0.95012 0.95842 0.97378 1.69898 1.15133 1.45018 1.23562 0.86846 0.81455 0.81607 0.79742 1.19916 1.21092 1.19104 1.20250 0.78217 0.86885 0.85094 1.90674 1.45852 1.18188 1.87295 1.21711 1.03633 0.99746 0.92501 1.19903 1.04462 0.97018 0.84841 1.22561 0.83448 1.02493 0.96449 1.21602 1.01317 1.03293 0.96667 1.21447 0.93672 1.06103 1.00761 1.21273 0.95932 0.98593 0.88384 1.20544 0.91453 0.99897 0.97644 0.85019 1.23191 0.93080 1.03253 1.00780 1.22517 1.03050 0.96249 0.94212 0.87487 1.21383 1.01297 1.02187 0.93109 1.83919 1.35431 1.57866 1.29747 0.92960 0.92246 0.91983 0.89738 0.91297 0.95292 0.94598 0.92585 0.88847 0.89251 0.89418 0.87781 0.83319 0.83707 0.88060 0.87969 0.92297 0.91927 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.59 -12.09 2.46 -175.05 -0.43 -12.52 16 4 C 0.22 5.27 4.23 -5.19 -0.02 5.25 16 5 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 9 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.51 10.18 7.67 -10.99 -0.08 10.09 16 14 O -0.54 -13.08 15.56 5.55 0.09 -13.00 16 15 C -0.14 -1.98 4.23 -27.88 -0.12 -2.10 16 16 C -0.02 -0.35 5.04 -27.88 -0.14 -0.49 16 17 C 0.00 0.01 6.58 -35.62 -0.23 -0.23 16 18 C -0.21 -2.60 10.81 -39.70 -0.43 -3.03 16 19 C -0.20 -2.28 10.81 -39.70 -0.43 -2.71 16 20 C 0.01 0.09 6.80 -35.62 -0.24 -0.15 16 21 C -0.08 -0.66 5.96 -91.77 -0.55 -1.21 16 22 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 23 C -0.17 -1.29 9.81 -26.73 -0.26 -1.55 16 24 C -0.14 -1.09 6.11 -90.62 -0.55 -1.64 16 25 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 26 C -0.12 -0.68 10.19 37.16 0.38 -0.30 16 27 O -0.17 -2.31 10.36 5.71 0.06 -2.25 16 28 H 0.05 0.64 7.22 -51.92 -0.37 0.26 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.07 0.91 6.44 -51.92 -0.33 0.58 16 33 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 34 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.09 1.24 7.40 -51.92 -0.38 0.86 16 37 H 0.09 1.15 7.18 -51.93 -0.37 0.78 16 38 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 39 H 0.10 1.51 8.10 -51.92 -0.42 1.09 16 40 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.10 0.91 7.96 -51.93 -0.41 0.49 16 43 H 0.10 0.61 8.05 -51.93 -0.42 0.19 16 44 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -34.10 382.10 -8.86 -42.96 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.67 Total: 0.77 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.77 Total: -11.75 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.34 Total: -39.49 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.15 Total: -15.25 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.10 -8.86 -42.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.810 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds