Wall clock time and date at job start Tue Mar 31 2020 08:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47176 * 2 1 4 4 C 1.46501 * 119.99505 * 270.00146 * 3 2 1 5 5 C 1.50704 * 109.46859 * 269.99596 * 4 3 2 6 6 H 1.08001 * 119.99841 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00049 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99747 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46922 * 90.00495 * 9 7 5 11 11 H 1.48504 * 109.47143 * 210.00273 * 9 7 5 12 12 H 1.48498 * 109.47438 * 330.00125 * 9 7 5 13 13 C 1.34771 * 120.00048 * 89.99856 * 3 2 1 14 14 O 1.21284 * 119.99606 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00404 * 359.97438 * 13 3 2 16 16 C 1.52998 * 109.47340 * 180.02562 * 15 13 3 17 17 C 1.50699 * 109.47019 * 180.02562 * 16 15 13 18 18 C 1.34518 * 125.79172 * 90.00030 * 17 16 15 19 19 C 1.41383 * 106.84198 * 180.02562 * 18 17 16 20 20 C 1.34522 * 106.83827 * 0.02562 * 19 18 17 21 21 C 1.50697 * 125.78503 * 179.97438 * 20 19 18 22 22 H 1.09001 * 115.55460 * 334.27660 * 21 20 19 23 23 C 1.53006 * 117.49508 * 188.61069 * 21 20 19 24 24 C 1.52997 * 117.49950 * 119.99064 * 21 20 19 25 25 H 1.09002 * 117.49910 * 359.97438 * 24 21 20 26 26 C 1.53001 * 117.49889 * 214.97967 * 24 21 20 27 27 O 1.34295 * 108.42213 * 0.26210 * 20 19 18 28 28 H 1.09007 * 109.47055 * 300.00275 * 1 2 3 29 29 H 1.08995 * 109.46954 * 60.00369 * 1 2 3 30 30 H 1.09004 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47141 * 239.99404 * 2 1 3 32 32 H 1.09008 * 109.47011 * 119.99815 * 2 1 3 33 33 H 1.08992 * 109.47346 * 29.99610 * 4 3 2 34 34 H 1.09000 * 109.46619 * 150.00339 * 4 3 2 35 35 H 0.97001 * 119.99842 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46614 * 60.00219 * 15 13 3 37 37 H 1.09000 * 109.47423 * 300.00444 * 15 13 3 38 38 H 1.08994 * 109.46935 * 60.00276 * 16 15 13 39 39 H 1.09008 * 109.47118 * 300.00198 * 16 15 13 40 40 H 1.07995 * 126.57681 * 0.05743 * 18 17 16 41 41 H 1.07992 * 126.58148 * 180.02562 * 19 18 17 42 42 H 1.08990 * 117.50086 * 359.97438 * 23 21 20 43 43 H 1.09004 * 117.49623 * 145.02605 * 23 21 20 44 44 H 1.08998 * 109.46673 * 299.97655 * 26 24 21 45 45 H 1.08994 * 109.47426 * 59.98444 * 26 24 21 46 46 H 1.09000 * 109.47070 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0961 7 6 4.1494 2.3903 -2.8775 8 7 5.3914 2.1832 -3.2573 9 14 3.0130 3.4357 -3.9288 10 1 3.1157 4.8559 -3.5071 11 1 3.4067 3.3133 -5.3555 12 1 1.6135 2.9690 -3.7598 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9913 1.3065 2.4723 16 6 2.3222 2.2441 3.6352 17 6 2.0710 1.5337 4.9403 18 6 2.9688 0.7995 5.6218 19 6 2.3129 0.3215 6.7795 20 6 1.0533 0.7918 6.7359 21 6 -0.0181 0.5383 7.7648 22 1 0.0934 -0.3785 8.3437 23 6 -1.4400 0.9946 7.4313 24 6 -0.6177 1.7539 8.4746 25 1 -0.2370 2.7370 8.1975 26 6 -1.0147 1.5898 9.9430 27 8 0.9108 1.5203 5.6167 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 5.7174 2.5737 -4.0833 36 1 2.6212 0.4187 2.5302 37 1 0.9432 1.0127 2.5299 38 1 1.6920 3.1315 3.5770 39 1 3.3703 2.5383 3.5778 40 1 3.9940 0.6116 5.3391 41 1 2.7409 -0.3015 7.5508 42 1 -1.6003 1.4785 6.4679 43 1 -2.2638 0.3782 7.7912 44 1 -1.7667 0.8056 10.0306 45 1 -0.1365 1.3184 10.5287 46 1 -1.4238 2.5288 10.3159 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:02 Heat of formation + Delta-G solvation = -29.207373 kcal Electronic energy + Delta-G solvation = -24461.562277 eV Core-core repulsion = 20931.602170 eV Total energy + Delta-G solvation = -3529.960106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -43.60870 -40.83023 -38.67217 -37.08315 -35.21768 -34.70775 -33.78510 -31.90597 -30.74427 -29.70151 -28.60119 -26.11758 -24.41271 -23.86759 -22.86147 -22.64040 -21.63191 -20.80783 -19.84554 -19.11158 -18.32371 -17.53749 -17.33349 -16.87369 -16.71155 -16.07244 -15.87822 -15.36446 -14.83610 -14.73790 -14.69381 -14.46779 -14.37657 -13.92218 -13.76129 -13.73004 -13.44203 -13.34438 -13.21079 -13.10343 -13.01664 -12.76512 -12.53655 -12.38816 -12.36019 -12.19609 -12.03350 -11.82350 -11.74601 -11.53561 -11.01144 -10.83993 -10.79856 -10.65505 -9.43298 -9.11613 -8.34509 -6.39301 0.66186 1.31701 1.35756 1.44098 1.60418 1.76519 1.85386 2.30055 2.34020 2.88593 2.99634 3.40017 3.59519 3.82841 3.88819 3.90502 3.99423 4.05659 4.14271 4.17577 4.34252 4.39326 4.41049 4.51138 4.60897 4.69500 4.75039 4.80645 4.89147 4.90594 4.92715 4.94875 4.96854 4.98759 5.00895 5.08063 5.15277 5.18706 5.22861 5.37417 5.41016 5.46352 5.61079 5.64626 6.22786 6.23322 6.61763 6.68962 7.20699 7.39576 8.82304 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.002573 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.733154 B =10878.859425 C =11140.211100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.600 5.600 4 C 0.224 3.776 5 C -0.534 4.534 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.499 3.501 14 O -0.594 6.594 15 C -0.118 4.118 16 C -0.017 4.017 17 C -0.019 4.019 18 C -0.210 4.210 19 C -0.209 4.209 20 C 0.005 3.995 21 C -0.085 4.085 22 H 0.156 0.844 23 C -0.164 4.164 24 C -0.140 4.140 25 H 0.089 0.911 26 C -0.119 4.119 27 O -0.187 6.187 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.018 0.982 35 H 0.268 0.732 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.143 -7.790 23.895 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.331 5.331 4 C 0.102 3.898 5 C -0.573 4.573 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.289 3.711 14 O -0.475 6.475 15 C -0.158 4.158 16 C -0.055 4.055 17 C -0.069 4.069 18 C -0.229 4.229 19 C -0.228 4.228 20 C -0.044 4.044 21 C -0.103 4.103 22 H 0.173 0.827 23 C -0.201 4.201 24 C -0.159 4.159 25 H 0.108 0.892 26 C -0.176 4.176 27 O -0.085 6.085 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.176 0.824 41 H 0.186 0.814 42 H 0.103 0.897 43 H 0.143 0.857 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.089 -7.050 23.643 29.454 hybrid contribution 0.723 0.627 -1.055 1.424 sum -15.366 -6.423 22.588 28.064 Atomic orbital electron populations 1.22159 0.94075 1.03628 1.02028 1.21779 0.95553 0.81127 1.03993 1.48073 1.63951 1.15197 1.05859 1.19305 0.94849 0.93030 0.82643 1.21552 0.97019 1.32010 1.06707 0.95219 1.25856 0.96740 0.97245 0.98994 1.70047 1.17367 1.46560 1.24477 0.85719 0.80436 0.79003 0.77816 1.20221 1.19948 1.16237 1.21203 0.76848 0.86510 0.86569 1.90641 1.48077 1.20631 1.88160 1.21644 1.05457 0.99517 0.89159 1.19704 1.03548 0.96726 0.85536 1.22320 0.84096 1.03801 0.96634 1.21861 1.01623 1.02560 0.96858 1.21758 0.93581 1.06508 1.00980 1.21938 0.97029 0.97442 0.88034 1.20795 0.91010 1.01163 0.97339 0.82696 1.23246 0.93386 1.03315 1.00177 1.22549 1.02626 0.95130 0.95578 0.89241 1.21390 1.01901 1.02926 0.91388 1.83903 1.35529 1.58530 1.30553 0.92180 0.93396 0.88785 0.90864 0.88625 0.93440 0.96413 0.92284 0.87036 0.86748 0.90517 0.88933 0.82411 0.81378 0.89705 0.85750 0.90979 0.91406 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.90 16 2 C 0.10 2.88 5.93 86.38 0.51 3.39 16 3 N -0.60 -24.42 2.46 -826.14 -2.03 -26.45 16 4 C 0.22 11.05 4.23 85.63 0.36 11.41 16 5 C -0.53 -31.72 9.94 25.60 0.25 -31.47 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.57 5.47 84.65 0.46 1.04 16 8 N -0.94 -60.14 13.96 21.45 0.30 -59.84 16 9 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 13 C 0.50 20.16 7.67 87.66 0.67 20.84 16 14 O -0.59 -29.71 15.56 -3.04 -0.05 -29.75 16 15 C -0.12 -3.33 4.23 29.85 0.13 -3.20 16 16 C -0.02 -0.50 5.04 29.85 0.15 -0.35 16 17 C -0.02 -0.50 6.58 24.83 0.16 -0.33 16 18 C -0.21 -4.97 10.81 22.19 0.24 -4.73 16 19 C -0.21 -4.36 10.81 22.19 0.24 -4.12 16 20 C 0.01 0.11 6.80 24.83 0.17 0.28 16 21 C -0.09 -1.26 5.96 -11.54 -0.07 -1.33 16 22 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 23 C -0.16 -2.23 9.81 30.60 0.30 -1.93 16 24 C -0.14 -1.92 6.11 -10.79 -0.07 -1.98 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 C -0.12 -1.02 10.19 71.98 0.73 -0.29 16 27 O -0.19 -4.89 10.36 -2.48 -0.03 -4.91 16 28 H 0.06 1.28 7.22 -2.38 -0.02 1.26 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 32 H 0.10 2.29 6.44 -2.38 -0.02 2.27 16 33 H 0.05 2.16 7.13 -2.39 -0.02 2.14 16 34 H 0.02 0.94 6.85 -2.39 -0.02 0.93 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.11 2.76 7.40 -2.38 -0.02 2.75 16 37 H 0.11 2.68 7.18 -2.39 -0.02 2.66 16 38 H 0.08 2.31 8.10 -2.39 -0.02 2.30 16 39 H 0.09 2.80 8.10 -2.38 -0.02 2.79 16 40 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 42 H 0.08 1.44 7.96 -2.39 -0.02 1.42 16 43 H 0.12 1.11 8.05 -2.38 -0.02 1.09 16 44 H 0.07 0.45 7.90 -2.39 -0.02 0.43 16 45 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -77.58 382.10 5.96 -71.62 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.89 Total: 18.18 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 4.99 Total: -15.69 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.73 Total: -86.29 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.07 Total: -34.67 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -77.58 5.96 -71.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.410 kcal (2) G-P(sol) polarization free energy of solvation -77.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds