Wall clock time and date at job start Tue Mar 31 2020 08:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47092 * 2 1 4 4 C 1.46500 * 119.99656 * 269.99636 * 3 2 1 5 5 C 1.50704 * 109.47143 * 270.00086 * 4 3 2 6 6 H 1.07995 * 120.00034 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99747 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99950 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99488 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47330 * 89.99688 * 9 7 5 11 11 H 1.48500 * 109.46864 * 209.99427 * 9 7 5 12 12 H 1.48498 * 109.47456 * 329.99319 * 9 7 5 13 13 C 1.34776 * 120.00592 * 89.99698 * 3 2 1 14 14 O 1.21274 * 120.00462 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99647 * 0.02562 * 13 3 2 16 16 C 1.52998 * 109.47188 * 180.02562 * 15 13 3 17 17 C 1.52998 * 109.47242 * 179.97438 * 16 15 13 18 18 O 1.42901 * 109.47046 * 180.02562 * 17 16 15 19 19 C 1.35905 * 116.99604 * 180.02562 * 18 17 16 20 20 C 1.38723 * 120.05884 * 359.72201 * 19 18 17 21 21 C 1.38145 * 119.94323 * 179.77076 * 20 19 18 22 22 C 1.38260 * 120.05692 * 0.50972 * 21 20 19 23 23 C 1.50706 * 119.94706 * 179.76915 * 22 21 20 24 24 C 1.38268 * 120.10972 * 359.74026 * 22 21 20 25 25 C 1.38139 * 120.05510 * 0.02562 * 24 22 21 26 26 H 1.08997 * 109.46723 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47302 * 300.00265 * 1 2 3 28 28 H 1.09000 * 109.46706 * 60.00567 * 1 2 3 29 29 H 1.08994 * 109.47302 * 239.99734 * 2 1 3 30 30 H 1.09000 * 109.46706 * 119.99433 * 2 1 3 31 31 H 1.08999 * 109.47428 * 30.00002 * 4 3 2 32 32 H 1.09005 * 109.47258 * 149.99781 * 4 3 2 33 33 H 0.97000 * 119.99426 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47285 * 60.00020 * 15 13 3 35 35 H 1.09006 * 109.47291 * 299.99806 * 15 13 3 36 36 H 1.08999 * 109.47046 * 59.99807 * 16 15 13 37 37 H 1.08996 * 109.47254 * 299.99902 * 16 15 13 38 38 H 1.08999 * 109.47084 * 60.00043 * 17 16 15 39 39 H 1.08998 * 109.47592 * 300.00144 * 17 16 15 40 40 H 1.08001 * 120.02769 * 0.02562 * 20 19 18 41 41 H 1.08006 * 119.97076 * 180.25587 * 21 20 19 42 42 H 1.08999 * 109.46991 * 269.97359 * 23 22 21 43 43 H 1.09001 * 109.46891 * 29.97509 * 23 22 21 44 44 H 1.08994 * 109.47121 * 149.97471 * 23 22 21 45 45 H 1.08008 * 119.97007 * 179.97438 * 24 22 21 46 46 H 1.08001 * 120.02451 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9135 2.0961 -3.4170 10 1 5.9762 0.8755 -4.2604 11 1 6.3931 3.2636 -4.1994 12 1 6.7737 1.9154 -2.2200 13 6 2.2430 2.0167 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9923 1.3061 2.4723 16 6 2.3229 2.2438 3.6352 17 6 2.0678 1.5227 4.9602 18 8 2.3761 2.3987 6.0463 19 6 2.2032 1.9089 7.3022 20 6 1.7408 0.6139 7.4853 21 6 1.5704 0.1168 8.7629 22 6 1.8503 0.9123 9.8586 23 6 1.6585 0.3692 11.2512 24 6 2.3063 2.2051 9.6787 25 6 2.4829 2.7053 8.4032 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5818 1.6876 -2.0284 32 1 2.0955 3.1410 -1.1386 33 1 3.6756 3.5167 -4.4436 34 1 2.6228 0.4189 2.5299 35 1 0.9444 1.0116 2.5303 36 1 1.6921 3.1308 3.5773 37 1 3.3706 2.5388 3.5775 38 1 2.6984 0.6355 5.0183 39 1 1.0200 1.2280 5.0177 40 1 1.5181 -0.0066 6.6298 41 1 1.2144 -0.8928 8.9060 42 1 0.6432 0.5801 11.5868 43 1 1.8234 -0.7082 11.2469 44 1 2.3704 0.8430 11.9271 45 1 2.5239 2.8248 10.5362 46 1 2.8388 3.7153 8.2632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:04 Heat of formation + Delta-G solvation = -88.922761 kcal Electronic energy + Delta-G solvation = -23968.472265 eV Core-core repulsion = 20435.922705 eV Total energy + Delta-G solvation = -3532.549560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.81 seconds Orbital eigenvalues (eV) -41.14346 -40.70540 -38.71084 -36.99932 -35.16987 -34.65017 -32.71747 -31.94174 -31.58033 -29.71839 -28.11726 -26.84190 -25.09148 -24.33623 -23.69156 -22.44894 -21.89734 -19.92427 -19.04600 -18.63083 -17.91303 -17.40780 -17.14527 -16.76049 -16.34876 -16.23116 -16.01416 -15.23151 -14.99841 -14.78822 -14.59345 -14.43921 -14.38275 -14.17890 -14.02154 -13.61010 -13.27447 -13.25026 -12.99393 -12.91360 -12.86367 -12.69399 -12.49913 -12.36317 -12.34212 -12.23109 -12.08582 -11.80411 -11.72010 -11.61899 -11.46226 -10.65376 -10.59594 -9.93666 -9.43003 -8.96869 -8.23457 -6.38390 0.41177 0.48114 1.34711 1.38144 1.48307 1.85806 2.08241 2.35247 2.56171 2.81811 3.05714 3.62519 3.87991 3.90758 3.97427 4.04751 4.12173 4.12917 4.23526 4.37145 4.39344 4.46079 4.48237 4.49028 4.61260 4.68282 4.71756 4.86636 4.91156 4.97859 5.01201 5.05990 5.07087 5.12983 5.18193 5.23146 5.25736 5.40654 5.42478 5.43975 5.57895 5.71492 5.86823 5.92301 6.05974 6.50887 6.69615 6.82417 7.27708 7.50850 8.83499 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002253 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.961324 B =12422.901485 C =12978.640544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.260 3.740 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.492 3.508 14 O -0.603 6.603 15 C -0.118 4.118 16 C -0.099 4.099 17 C 0.067 3.933 18 O -0.340 6.340 19 C 0.102 3.898 20 C -0.212 4.212 21 C -0.086 4.086 22 C -0.136 4.136 23 C -0.107 4.107 24 C -0.087 4.087 25 C -0.171 4.171 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.021 0.979 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.147 0.853 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.825 -12.423 26.647 30.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.139 3.861 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.195 4.195 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.485 6.485 15 C -0.158 4.158 16 C -0.137 4.137 17 C -0.007 4.007 18 O -0.254 6.254 19 C 0.057 3.943 20 C -0.230 4.230 21 C -0.104 4.104 22 C -0.136 4.136 23 C -0.164 4.164 24 C -0.105 4.105 25 C -0.190 4.190 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.039 0.961 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.164 0.836 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.577 -11.573 26.387 29.555 hybrid contribution 0.867 0.543 -1.204 1.580 sum -5.711 -11.030 25.183 28.080 Atomic orbital electron populations 1.22165 0.94609 1.03539 1.01683 1.21785 0.95286 0.81156 1.04144 1.48310 1.63794 1.15236 1.06174 1.18688 0.95270 0.91452 0.80712 1.21720 0.97904 1.31926 1.06483 0.92805 1.25904 1.02520 0.94513 0.96531 1.70059 1.37807 1.34223 1.14778 0.85394 0.78870 0.78222 0.78194 1.18634 1.20724 1.19806 1.21421 0.77028 0.86531 0.86906 1.90648 1.48421 1.21146 1.88274 1.21550 1.06143 0.99417 0.88656 1.21119 1.02442 0.98651 0.91481 1.22854 1.01977 0.92555 0.83320 1.86046 1.83178 1.43217 1.12973 1.19330 0.96990 0.93549 0.84392 1.21524 1.06566 0.95072 0.99847 1.21181 0.97698 1.00504 0.91049 1.20227 1.01739 0.94481 0.97136 1.20758 1.02740 1.01600 0.91265 1.21125 0.97625 0.95625 0.96078 1.20682 1.06318 1.00807 0.91178 0.88513 0.91794 0.94696 0.91238 0.87491 0.96081 0.98866 0.92443 0.85999 0.85578 0.92301 0.92734 0.89960 0.89661 0.83703 0.83525 0.90656 0.90720 0.90905 0.83555 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 10.24 71.98 0.74 -3.02 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.40 2.46 -826.15 -2.03 -27.43 16 4 C 0.26 14.31 5.16 85.63 0.44 14.75 16 5 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.00 0.24 5.46 84.66 0.46 0.70 16 8 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 9 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.49 20.27 7.67 87.66 0.67 20.94 16 14 O -0.60 -32.07 15.56 -3.01 -0.05 -32.12 16 15 C -0.12 -2.99 4.25 29.85 0.13 -2.86 16 16 C -0.10 -2.69 4.87 30.59 0.15 -2.54 16 17 C 0.07 1.37 4.74 71.98 0.34 1.71 16 18 O -0.34 -8.85 10.14 -92.48 -0.94 -9.79 16 19 C 0.10 2.34 6.69 22.50 0.15 2.49 16 20 C -0.21 -3.79 9.04 22.36 0.20 -3.59 16 21 C -0.09 -1.30 9.69 22.25 0.22 -1.08 16 22 C -0.14 -2.01 5.88 -19.85 -0.12 -2.12 16 23 C -0.11 -0.94 10.01 71.24 0.71 -0.23 16 24 C -0.09 -1.43 9.69 22.25 0.22 -1.22 16 25 C -0.17 -3.63 9.99 22.36 0.22 -3.41 16 26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.32 7.22 -2.39 -0.02 1.31 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 30 H 0.11 2.20 6.44 -2.39 -0.02 2.18 16 31 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 32 H -0.01 -0.43 7.42 -2.38 -0.02 -0.45 16 33 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.12 2.36 7.40 -2.39 -0.02 2.34 16 35 H 0.13 2.29 7.19 -2.38 -0.02 2.27 16 36 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.08 1.33 7.67 -2.39 -0.02 1.31 16 39 H 0.09 1.32 7.65 -2.39 -0.02 1.30 16 40 H 0.15 1.98 6.30 -2.91 -0.02 1.96 16 41 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 44 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 45 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 46 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -80.34 381.53 5.53 -74.81 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.94 Total: 11.42 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.29 Total: -7.63 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -1.74 Total: -84.33 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.98 Total: -41.91 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -80.34 5.53 -74.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.108 kcal (2) G-P(sol) polarization free energy of solvation -80.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.81 seconds