Wall clock time and date at job start Tue Mar 31 2020 09:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46822 * 2 1 4 4 C 1.42896 * 114.00038 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47346 * 30.00519 * 4 3 2 6 6 C 1.53002 * 109.47669 * 270.00542 * 4 3 2 7 7 C 1.52995 * 109.47499 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46987 * 59.99700 * 7 6 4 9 9 C 1.52993 * 109.47107 * 299.99905 * 8 7 6 10 10 H 1.09003 * 109.47504 * 300.00269 * 9 8 7 11 11 N 1.46500 * 109.46936 * 180.02562 * 9 8 7 12 12 C 1.39672 * 120.00494 * 85.00416 * 11 9 8 13 13 C 1.39000 * 120.03775 * 359.97438 * 12 11 9 14 14 C 1.38152 * 120.06431 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.14004 * 0.02602 * 14 13 12 16 16 C 1.38917 * 120.07891 * 359.95401 * 15 14 13 17 17 O 1.35742 * 120.02815 * 180.02562 * 16 15 14 18 18 C 1.34836 * 116.99807 * 174.48143 * 17 16 15 19 19 H 1.07999 * 120.00331 * 5.08622 * 18 17 16 20 20 C 1.38656 * 120.00062 * 185.07786 * 18 17 16 21 21 N 1.31555 * 119.99753 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00017 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47150 * 89.99631 * 22 20 18 24 24 H 1.48494 * 109.47195 * 210.00094 * 22 20 18 25 25 H 1.48505 * 109.47163 * 329.99640 * 22 20 18 26 26 C 1.38750 * 120.04221 * 179.72617 * 12 11 9 27 27 C 1.52995 * 109.47120 * 60.00176 * 9 8 7 28 28 H 1.09000 * 109.46663 * 299.99150 * 1 2 3 29 29 H 1.08990 * 109.47210 * 59.99992 * 1 2 3 30 30 H 1.09006 * 109.46396 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47276 * 240.00494 * 2 1 3 32 32 H 1.09004 * 109.47713 * 120.00285 * 2 1 3 33 33 H 1.09002 * 109.46266 * 300.00077 * 6 4 3 34 34 H 1.08998 * 109.46965 * 59.99468 * 6 4 3 35 35 H 1.09003 * 109.46856 * 299.99901 * 7 6 4 36 36 H 1.09000 * 109.47109 * 179.97438 * 7 6 4 37 37 H 1.09002 * 109.46406 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.47164 * 60.00396 * 8 7 6 39 39 H 0.97013 * 119.99815 * 264.99804 * 11 9 8 40 40 H 1.08002 * 119.96936 * 359.97438 * 13 12 11 41 41 H 1.07992 * 119.92774 * 180.02562 * 14 13 12 42 42 H 1.07989 * 119.95841 * 179.97438 * 15 14 13 43 43 H 0.97000 * 119.99638 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.06804 * 359.97438 * 26 12 11 45 45 H 1.09005 * 109.47210 * 179.97438 * 27 9 8 46 46 H 1.09002 * 109.47376 * 60.00260 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8636 0.6017 -0.5130 6 6 3.9388 1.5006 1.4433 7 6 5.4639 1.6222 1.4438 8 6 5.8733 2.9080 0.7228 9 6 5.3655 2.8676 -0.7199 10 1 5.7985 2.0093 -1.2336 11 7 5.7580 4.0985 -1.4104 12 6 7.0207 4.1968 -1.9992 13 6 7.9059 3.1273 -1.9301 14 6 9.1552 3.2241 -2.5118 15 6 9.5291 4.3837 -3.1635 16 6 8.6490 5.4560 -3.2365 17 8 9.0172 6.5946 -3.8775 18 6 8.0779 7.5526 -4.0116 19 1 7.1109 7.4297 -3.5465 20 6 8.3535 8.6957 -4.7464 21 7 7.4372 9.6306 -4.8768 22 14 10.0258 8.9081 -5.5512 23 1 9.9922 8.3357 -6.9210 24 1 10.3589 10.3532 -5.6265 25 1 11.0558 8.2041 -4.7457 26 6 7.3912 5.3602 -2.6584 27 6 3.8403 2.7460 -0.7204 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0278 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8935 -0.5139 0.8900 33 1 3.5060 2.3592 1.9568 34 1 3.6466 0.5848 1.9571 35 1 5.8969 0.7638 0.9301 36 1 5.8256 1.6514 2.4716 37 1 6.9598 2.9948 0.7236 38 1 5.4403 3.7663 1.2365 39 1 5.1408 4.8454 -1.4588 40 1 7.6170 2.2200 -1.4203 41 1 9.8409 2.3916 -2.4571 42 1 10.5065 4.4563 -3.6169 43 1 7.6299 10.4301 -5.3912 44 1 6.7037 6.1910 -2.7174 45 1 3.4785 2.7176 -1.7483 46 1 3.4072 3.6043 -0.2068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721165582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:00 Heat of formation + Delta-G solvation = -81.545102 kcal Electronic energy + Delta-G solvation = -24690.350377 eV Core-core repulsion = 21158.120736 eV Total energy + Delta-G solvation = -3532.229641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04631 -40.34241 -38.87597 -37.57118 -35.25659 -34.35608 -32.46196 -31.68171 -30.69010 -29.96054 -28.67234 -27.13534 -24.06159 -23.70868 -23.32327 -23.11024 -21.84551 -20.94393 -19.75813 -19.14133 -17.90424 -17.17786 -16.88121 -16.66706 -16.38605 -16.07701 -15.76797 -15.62191 -15.31174 -15.19760 -14.95608 -14.57759 -14.48382 -14.10680 -13.99661 -13.87802 -13.47437 -13.33459 -13.09599 -12.79584 -12.62835 -12.58561 -12.44396 -12.39483 -12.04790 -11.98281 -11.87931 -11.66476 -11.52360 -11.44334 -11.35073 -10.97651 -10.65319 -10.38390 -9.17498 -8.48645 -8.25676 -6.21044 0.74595 0.88939 1.31399 1.36516 1.52910 2.28906 2.33789 2.80676 2.83629 3.15406 3.26697 3.71109 3.85639 3.89034 4.11278 4.16768 4.19036 4.23814 4.27832 4.32343 4.39137 4.46691 4.50533 4.51610 4.59650 4.61608 4.72643 4.80315 4.91471 5.00125 5.01347 5.03642 5.05770 5.13168 5.14633 5.26374 5.28380 5.30463 5.42773 5.45791 5.49223 5.76396 5.85263 5.91531 6.18209 6.33006 6.60401 6.80348 6.86506 7.63811 8.63325 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.002723 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.107677 B =10282.130823 C =11020.039803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.406 6.406 4 C 0.098 3.902 5 H 0.075 0.925 6 C -0.136 4.136 7 C -0.107 4.107 8 C -0.134 4.134 9 C 0.163 3.837 10 H 0.087 0.913 11 N -0.744 5.744 12 C 0.255 3.745 13 C -0.256 4.256 14 C -0.026 4.026 15 C -0.251 4.251 16 C 0.158 3.842 17 O -0.246 6.246 18 C -0.395 4.395 19 H 0.078 0.922 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.263 1.263 26 C -0.314 4.314 27 C -0.119 4.119 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.395 0.605 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.121 0.879 43 H 0.284 0.716 44 H 0.101 0.899 45 H 0.065 0.935 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 -23.094 12.833 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.326 6.326 4 C 0.040 3.960 5 H 0.093 0.907 6 C -0.174 4.174 7 C -0.145 4.145 8 C -0.173 4.173 9 C 0.058 3.942 10 H 0.105 0.895 11 N -0.372 5.372 12 C 0.151 3.849 13 C -0.279 4.279 14 C -0.044 4.044 15 C -0.272 4.272 16 C 0.108 3.892 17 O -0.153 6.153 18 C -0.472 4.472 19 H 0.095 0.905 20 C -0.190 4.190 21 N -0.568 5.568 22 Si 0.794 3.206 23 H -0.190 1.190 24 H -0.192 1.192 25 H -0.187 1.187 26 C -0.338 4.338 27 C -0.158 4.158 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.229 0.771 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.139 0.861 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.083 0.917 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.658 -22.858 12.740 27.266 hybrid contribution -0.088 1.231 -0.514 1.337 sum -7.746 -21.627 12.226 26.023 Atomic orbital electron populations 1.21775 0.93310 1.03286 1.02480 1.22695 0.96067 0.82978 1.00906 1.87902 1.21427 1.28025 1.95225 1.21978 0.80793 0.97254 0.95936 0.90726 1.22018 0.96211 1.02887 0.96253 1.21416 0.94597 0.97108 1.01364 1.22051 1.01267 0.98931 0.95063 1.20847 0.93617 0.87147 0.92575 0.89508 1.44816 1.13812 1.17848 1.60727 1.17569 0.85907 0.92276 0.89105 1.20640 0.95480 0.99236 1.12502 1.20897 0.95591 0.95673 0.92286 1.20320 1.00867 0.93654 1.12328 1.19409 0.93177 0.86088 0.90514 1.83521 1.39028 1.23387 1.69358 1.20685 0.95187 0.97488 1.33800 0.90473 1.25300 1.02883 0.93943 0.96914 1.69736 1.35777 1.09461 1.41796 0.85202 0.78555 0.77818 0.79040 1.19045 1.19181 1.18708 1.20579 0.99220 1.00340 1.13612 1.21750 0.94323 0.98556 1.01127 0.92331 0.92761 0.89167 0.92748 0.92137 0.92081 0.90398 0.90327 0.90288 0.91764 0.92578 0.77102 0.83801 0.82378 0.86084 0.90662 0.88111 0.91651 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.67 6.47 71.98 0.47 1.13 16 3 O -0.41 -7.85 9.99 -148.98 -1.49 -9.34 16 4 C 0.10 1.63 2.61 30.59 0.08 1.71 16 5 H 0.07 1.05 7.79 -2.39 -0.02 1.03 16 6 C -0.14 -1.92 5.54 30.59 0.17 -1.75 16 7 C -0.11 -1.42 5.92 30.59 0.18 -1.24 16 8 C -0.13 -2.55 5.43 30.59 0.17 -2.38 16 9 C 0.16 3.47 2.15 44.99 0.10 3.56 16 10 H 0.09 1.73 6.48 -2.39 -0.02 1.72 16 11 N -0.74 -21.69 5.25 -319.03 -1.67 -23.36 16 12 C 0.26 9.17 6.63 38.20 0.25 9.42 16 13 C -0.26 -7.78 8.85 22.43 0.20 -7.59 16 14 C -0.03 -0.81 10.03 22.23 0.22 -0.58 16 15 C -0.25 -9.99 9.99 22.42 0.22 -9.77 16 16 C 0.16 7.73 6.65 22.56 0.15 7.88 16 17 O -0.25 -13.88 8.58 -22.71 -0.19 -14.08 16 18 C -0.40 -24.11 9.94 67.92 0.68 -23.43 16 19 H 0.08 4.96 5.43 -2.91 -0.02 4.95 16 20 C 0.01 0.44 5.49 84.83 0.47 0.90 16 21 N -0.93 -56.81 13.96 21.61 0.30 -56.51 16 22 Si 0.97 46.74 28.62 68.60 1.96 48.71 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 26 C -0.31 -14.43 9.01 22.52 0.20 -14.23 16 27 C -0.12 -2.40 5.04 30.59 0.15 -2.25 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.67 8.14 -2.38 -0.02 0.66 16 31 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 32 H 0.06 0.64 7.87 -2.38 -0.02 0.62 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.89 7.87 -2.39 -0.02 0.88 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.36 7.70 -2.39 -0.02 1.34 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.40 11.78 8.62 -92.70 -0.80 10.98 16 40 H 0.14 3.35 6.10 -2.91 -0.02 3.33 16 41 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.12 4.51 8.06 -2.92 -0.02 4.49 16 43 H 0.28 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.10 5.16 5.63 -2.91 -0.02 5.14 16 45 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -69.92 367.04 3.52 -66.39 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.17 Total: 27.84 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 4.45 Total: -39.65 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -1.37 Total: -79.87 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -1.68 Total: -23.42 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.96 Total: 48.71 kcal Total: -69.92 3.52 -66.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721165582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.154 kcal (2) G-P(sol) polarization free energy of solvation -69.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds