Wall clock time and date at job start Tue Mar 31 2020 09:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46987 * 2 1 4 4 C 1.42900 * 113.99654 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47161 * 329.99501 * 4 3 2 6 6 C 1.52998 * 109.47079 * 90.00140 * 4 3 2 7 7 C 1.53002 * 109.46969 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.47114 * 299.99985 * 7 6 4 9 9 C 1.53001 * 109.47019 * 59.99821 * 8 7 6 10 10 H 1.09007 * 109.46861 * 60.00232 * 9 8 7 11 11 N 1.46500 * 109.46908 * 179.97438 * 9 8 7 12 12 C 1.39676 * 120.00035 * 275.00312 * 11 9 8 13 13 C 1.39001 * 120.04145 * 359.97438 * 12 11 9 14 14 C 1.38145 * 120.06358 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.14058 * 0.02562 * 14 13 12 16 16 C 1.38908 * 120.08202 * 0.02562 * 15 14 13 17 17 O 1.35746 * 120.03539 * 179.97438 * 16 15 14 18 18 C 1.34828 * 117.00339 * 174.48290 * 17 16 15 19 19 H 1.07999 * 120.00263 * 5.08614 * 18 17 16 20 20 C 1.38653 * 120.00288 * 185.07958 * 18 17 16 21 21 N 1.31559 * 120.00210 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00083 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47253 * 89.99358 * 22 20 18 24 24 H 1.48492 * 109.46996 * 209.99671 * 22 20 18 25 25 H 1.48507 * 109.46667 * 329.99670 * 22 20 18 26 26 C 1.38749 * 120.03652 * 179.72847 * 12 11 9 27 27 C 1.52992 * 109.47327 * 300.00058 * 9 8 7 28 28 H 1.09001 * 109.46927 * 59.99954 * 1 2 3 29 29 H 1.09003 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47315 * 299.99873 * 1 2 3 31 31 H 1.09003 * 109.46657 * 240.00094 * 2 1 3 32 32 H 1.09001 * 109.46927 * 120.00046 * 2 1 3 33 33 H 1.08997 * 109.47340 * 299.99482 * 6 4 3 34 34 H 1.08994 * 109.47192 * 59.99940 * 6 4 3 35 35 H 1.09003 * 109.46809 * 60.00079 * 7 6 4 36 36 H 1.08999 * 109.47288 * 179.97438 * 7 6 4 37 37 H 1.09003 * 109.46878 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.46571 * 300.00107 * 8 7 6 39 39 H 0.97001 * 119.99832 * 95.00264 * 11 9 8 40 40 H 1.08001 * 119.97018 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.92649 * 180.02562 * 14 13 12 42 42 H 1.08005 * 119.95804 * 179.97438 * 15 14 13 43 43 H 0.97002 * 120.00372 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.07377 * 359.97091 * 26 12 11 45 45 H 1.08997 * 109.47482 * 300.00460 * 27 9 8 46 46 H 1.09004 * 109.47211 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5006 -1.4433 7 6 5.4639 1.6220 -1.4439 8 6 5.8734 2.9078 -0.7227 9 6 5.3656 2.8673 0.7200 10 1 5.7986 2.0089 1.2336 11 7 5.7582 4.0981 1.4106 12 6 7.0211 4.1962 1.9993 13 6 7.9057 3.1262 1.9309 14 6 9.1546 3.2224 2.5134 15 6 9.5283 4.3816 3.1661 16 6 8.6486 5.4541 3.2390 17 8 9.0164 6.5922 3.8809 18 6 8.1631 7.6341 3.8172 19 1 7.1997 7.5150 3.3437 20 6 8.5221 8.8586 4.3597 21 7 7.6893 9.8751 4.2980 22 14 10.1886 9.0649 5.1782 23 1 11.1859 9.5003 4.1678 24 1 10.0903 10.0883 6.2497 25 1 10.6141 7.7700 5.7678 26 6 7.3959 5.3636 2.6487 27 6 3.8405 2.7459 0.7206 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.6466 0.5848 -1.9571 34 1 3.5060 2.3591 -1.9568 35 1 5.8968 0.7636 -0.9302 36 1 5.8257 1.6504 -2.4717 37 1 6.9600 2.9940 -0.7228 38 1 5.4404 3.7661 -1.2364 39 1 5.1412 4.8450 1.4590 40 1 7.6161 2.2184 1.4225 41 1 9.8404 2.3899 2.4585 42 1 10.5053 4.4535 3.6208 43 1 7.9406 10.7318 4.6772 44 1 6.7122 6.1981 2.6995 45 1 3.4074 3.6042 0.2069 46 1 3.4787 2.7166 1.7484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721165584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:06 Heat of formation + Delta-G solvation = -63.695873 kcal Electronic energy + Delta-G solvation = -24689.458746 eV Core-core repulsion = 21158.003106 eV Total energy + Delta-G solvation = -3531.455640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.84539 -39.00484 -37.60589 -36.33659 -34.03312 -32.27976 -31.82603 -30.52911 -29.45945 -28.75230 -27.37535 -25.14627 -23.32318 -22.76559 -22.36295 -21.68179 -20.56379 -19.91527 -17.85217 -17.51594 -17.04149 -16.01200 -15.63114 -15.57681 -15.32408 -14.68730 -14.46537 -14.21296 -13.97234 -13.86848 -13.65399 -13.49164 -13.22520 -12.98843 -12.70826 -12.54152 -12.19103 -12.14467 -12.04165 -11.84183 -11.64050 -11.47006 -11.21889 -10.95266 -10.92599 -10.73217 -10.69131 -10.65403 -10.47516 -10.16592 -9.71537 -9.41790 -9.37877 -8.78265 -7.44527 -6.82486 -6.35941 -4.02654 2.31885 2.48709 3.23593 3.26485 3.29727 3.44911 3.80570 4.28940 4.47441 4.60803 4.65716 4.72697 4.75442 4.85511 4.94884 4.97340 5.02509 5.05124 5.08473 5.18264 5.24375 5.27423 5.36763 5.42067 5.57699 5.63149 5.73475 5.74001 5.80381 5.83463 5.89833 5.94799 6.03648 6.13152 6.17194 6.24804 6.35895 6.54162 6.60897 6.97853 7.00735 7.25198 7.30433 7.55620 7.84674 7.95453 8.09159 8.22271 9.00223 9.64934 10.72017 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.002704 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.603619 B =10351.641454 C =11012.137368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.383 6.383 4 C 0.097 3.903 5 H 0.061 0.939 6 C -0.141 4.141 7 C -0.114 4.114 8 C -0.138 4.138 9 C 0.163 3.837 10 H 0.078 0.922 11 N -0.747 5.747 12 C 0.251 3.749 13 C -0.274 4.274 14 C -0.041 4.041 15 C -0.238 4.238 16 C 0.196 3.804 17 O -0.218 6.218 18 C -0.386 4.386 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.883 5.883 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.291 4.291 27 C -0.124 4.124 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.396 0.604 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.278 0.722 44 H 0.130 0.870 45 H 0.075 0.925 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 -19.778 -10.519 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.302 6.302 4 C 0.039 3.961 5 H 0.079 0.921 6 C -0.179 4.179 7 C -0.152 4.152 8 C -0.177 4.177 9 C 0.057 3.943 10 H 0.096 0.904 11 N -0.378 5.378 12 C 0.150 3.850 13 C -0.296 4.296 14 C -0.060 4.060 15 C -0.259 4.259 16 C 0.143 3.857 17 O -0.123 6.123 18 C -0.461 4.461 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.522 5.522 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.314 4.314 27 C -0.162 4.162 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.231 0.769 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.148 0.852 45 H 0.094 0.906 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.986 -19.489 -10.386 23.842 hybrid contribution 0.389 0.371 0.260 0.597 sum -8.597 -19.118 -10.126 23.280 Atomic orbital electron populations 1.21747 0.93822 1.02144 1.03186 1.22493 0.95542 0.84032 0.99932 1.87926 1.20992 1.26230 1.95072 1.21982 0.80845 0.97922 0.95385 0.92066 1.22061 0.96260 1.02546 0.96984 1.21450 0.94722 0.98192 1.00883 1.22114 1.02083 0.97684 0.95860 1.20638 0.92844 0.88681 0.92164 0.90438 1.44588 1.15051 1.16611 1.61524 1.17468 0.84374 0.93094 0.90083 1.20157 0.96294 0.98938 1.14235 1.20370 0.94960 0.95798 0.94888 1.20021 1.00442 0.94084 1.11358 1.18802 0.91539 0.86652 0.88728 1.83579 1.46098 1.19022 1.63617 1.20754 0.98856 0.87135 1.39402 0.87717 1.24463 0.99132 0.93747 0.96747 1.69649 1.36079 1.01862 1.44566 0.86191 0.82825 0.78670 0.79275 1.19943 1.20893 1.18338 1.20623 0.99627 0.99158 1.12026 1.21824 0.95194 0.97693 1.01484 0.91889 0.91216 0.91793 0.93522 0.93423 0.91980 0.90993 0.91864 0.91430 0.90881 0.91582 0.76922 0.87592 0.87110 0.86992 0.91174 0.85202 0.90606 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.45 6.47 37.16 0.24 0.69 16 3 O -0.38 -4.01 9.99 -35.23 -0.35 -4.36 16 4 C 0.10 0.92 2.61 -26.73 -0.07 0.85 16 5 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 6 C -0.14 -1.20 5.54 -26.73 -0.15 -1.35 16 7 C -0.11 -0.98 5.92 -26.73 -0.16 -1.13 16 8 C -0.14 -1.50 5.44 -26.73 -0.15 -1.64 16 9 C 0.16 1.91 2.15 -67.93 -0.15 1.76 16 10 H 0.08 0.93 6.48 -51.93 -0.34 0.59 16 11 N -0.75 -11.09 5.25 -52.19 -0.27 -11.37 16 12 C 0.25 4.60 6.63 -83.81 -0.56 4.05 16 13 C -0.27 -4.65 8.85 -39.33 -0.35 -4.99 16 14 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 15 C -0.24 -4.88 9.99 -39.36 -0.39 -5.28 16 16 C 0.20 4.65 6.65 -39.14 -0.26 4.39 16 17 O -0.22 -5.90 8.58 0.07 0.00 -5.90 16 18 C -0.39 -11.06 9.94 30.89 0.31 -10.75 16 19 H 0.11 3.07 5.43 -52.49 -0.29 2.78 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -25.88 13.96 55.48 0.77 -25.11 16 22 Si 0.90 22.05 28.62 -169.99 -4.86 17.19 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.26 -6.35 7.11 56.52 0.40 -5.94 16 26 C -0.29 -6.40 9.01 -39.20 -0.35 -6.75 16 27 C -0.12 -1.32 5.04 -26.73 -0.13 -1.45 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.40 5.72 8.61 -40.82 -0.35 5.37 16 40 H 0.11 1.54 6.11 -52.49 -0.32 1.22 16 41 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 43 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.13 3.02 5.63 -52.49 -0.30 2.73 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -30.35 367.05 -8.88 -39.23 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.42 Total: 6.50 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.28 Total: -21.71 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.50 Total: -36.47 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.35 Total: -10.26 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.35 -8.88 -39.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721165584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.469 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds