Wall clock time and date at job start Tue Mar 31 2020 09:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46987 * 2 1 4 4 C 1.42900 * 113.99654 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47161 * 329.99501 * 4 3 2 6 6 C 1.52998 * 109.47079 * 90.00140 * 4 3 2 7 7 C 1.53002 * 109.46969 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.47114 * 299.99985 * 7 6 4 9 9 C 1.53001 * 109.47019 * 59.99821 * 8 7 6 10 10 H 1.09007 * 109.46861 * 60.00232 * 9 8 7 11 11 N 1.46500 * 109.46908 * 179.97438 * 9 8 7 12 12 C 1.39676 * 120.00035 * 275.00312 * 11 9 8 13 13 C 1.39001 * 120.04145 * 359.97438 * 12 11 9 14 14 C 1.38145 * 120.06358 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.14058 * 0.02562 * 14 13 12 16 16 C 1.38908 * 120.08202 * 0.02562 * 15 14 13 17 17 O 1.35746 * 120.03539 * 179.97438 * 16 15 14 18 18 C 1.34828 * 117.00339 * 174.48290 * 17 16 15 19 19 H 1.07999 * 120.00263 * 5.08614 * 18 17 16 20 20 C 1.38653 * 120.00288 * 185.07958 * 18 17 16 21 21 N 1.31559 * 120.00210 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00083 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47253 * 89.99358 * 22 20 18 24 24 H 1.48492 * 109.46996 * 209.99671 * 22 20 18 25 25 H 1.48507 * 109.46667 * 329.99670 * 22 20 18 26 26 C 1.38749 * 120.03652 * 179.72847 * 12 11 9 27 27 C 1.52992 * 109.47327 * 300.00058 * 9 8 7 28 28 H 1.09001 * 109.46927 * 59.99954 * 1 2 3 29 29 H 1.09003 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47315 * 299.99873 * 1 2 3 31 31 H 1.09003 * 109.46657 * 240.00094 * 2 1 3 32 32 H 1.09001 * 109.46927 * 120.00046 * 2 1 3 33 33 H 1.08997 * 109.47340 * 299.99482 * 6 4 3 34 34 H 1.08994 * 109.47192 * 59.99940 * 6 4 3 35 35 H 1.09003 * 109.46809 * 60.00079 * 7 6 4 36 36 H 1.08999 * 109.47288 * 179.97438 * 7 6 4 37 37 H 1.09003 * 109.46878 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.46571 * 300.00107 * 8 7 6 39 39 H 0.97001 * 119.99832 * 95.00264 * 11 9 8 40 40 H 1.08001 * 119.97018 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.92649 * 180.02562 * 14 13 12 42 42 H 1.08005 * 119.95804 * 179.97438 * 15 14 13 43 43 H 0.97002 * 120.00372 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.07377 * 359.97091 * 26 12 11 45 45 H 1.08997 * 109.47482 * 300.00460 * 27 9 8 46 46 H 1.09004 * 109.47211 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6016 0.5130 6 6 3.9387 1.5006 -1.4433 7 6 5.4639 1.6220 -1.4439 8 6 5.8734 2.9078 -0.7227 9 6 5.3656 2.8673 0.7200 10 1 5.7986 2.0089 1.2336 11 7 5.7582 4.0981 1.4106 12 6 7.0211 4.1962 1.9993 13 6 7.9057 3.1262 1.9309 14 6 9.1546 3.2224 2.5134 15 6 9.5283 4.3816 3.1661 16 6 8.6486 5.4541 3.2390 17 8 9.0164 6.5922 3.8809 18 6 8.1631 7.6341 3.8172 19 1 7.1997 7.5150 3.3437 20 6 8.5221 8.8586 4.3597 21 7 7.6893 9.8751 4.2980 22 14 10.1886 9.0649 5.1782 23 1 11.1859 9.5003 4.1678 24 1 10.0903 10.0883 6.2497 25 1 10.6141 7.7700 5.7678 26 6 7.3959 5.3636 2.6487 27 6 3.8405 2.7459 0.7206 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.6466 0.5848 -1.9571 34 1 3.5060 2.3591 -1.9568 35 1 5.8968 0.7636 -0.9302 36 1 5.8257 1.6504 -2.4717 37 1 6.9600 2.9940 -0.7228 38 1 5.4404 3.7661 -1.2364 39 1 5.1412 4.8450 1.4590 40 1 7.6161 2.2184 1.4225 41 1 9.8404 2.3899 2.4585 42 1 10.5053 4.4535 3.6208 43 1 7.9406 10.7318 4.6772 44 1 6.7122 6.1981 2.6995 45 1 3.4074 3.6042 0.2069 46 1 3.4787 2.7166 1.7484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721165584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:05 Heat of formation + Delta-G solvation = -81.518715 kcal Electronic energy + Delta-G solvation = -24690.231602 eV Core-core repulsion = 21158.003106 eV Total energy + Delta-G solvation = -3532.228496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04627 -40.34212 -38.87583 -37.57086 -35.25660 -34.35507 -32.46125 -31.68170 -30.68991 -29.96028 -28.67272 -27.13544 -24.06090 -23.70826 -23.32286 -23.11105 -21.84557 -20.94352 -19.75828 -19.14137 -17.90367 -17.17728 -16.88035 -16.66603 -16.38508 -16.07519 -15.72112 -15.68890 -15.29497 -15.19988 -14.95196 -14.57376 -14.49097 -14.10514 -13.99602 -13.87540 -13.47718 -13.33494 -13.09647 -12.79900 -12.62874 -12.57727 -12.44215 -12.39711 -12.05033 -11.98270 -11.87853 -11.67022 -11.52297 -11.44166 -11.34933 -10.97532 -10.65250 -10.38416 -9.17503 -8.48586 -8.25690 -6.21011 0.74587 0.88948 1.31388 1.36502 1.52910 2.28916 2.33799 2.80995 2.83287 3.15676 3.26519 3.71125 3.85671 3.89080 4.11250 4.16718 4.19077 4.23815 4.27816 4.32391 4.39195 4.46629 4.50599 4.51662 4.59610 4.61533 4.72649 4.80317 4.91454 5.00090 5.01418 5.03629 5.05802 5.13139 5.14615 5.26335 5.28398 5.30395 5.42718 5.45795 5.49220 5.76394 5.85258 5.91538 6.18210 6.33046 6.60402 6.80415 6.86538 7.63844 8.63352 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.002704 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.603619 B =10351.641454 C =11012.137368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.406 6.406 4 C 0.098 3.902 5 H 0.075 0.925 6 C -0.136 4.136 7 C -0.107 4.107 8 C -0.134 4.134 9 C 0.163 3.837 10 H 0.087 0.913 11 N -0.744 5.744 12 C 0.255 3.745 13 C -0.256 4.256 14 C -0.026 4.026 15 C -0.251 4.251 16 C 0.158 3.842 17 O -0.246 6.246 18 C -0.395 4.395 19 H 0.078 0.922 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.972 3.028 23 H -0.265 1.265 24 H -0.267 1.267 25 H -0.263 1.263 26 C -0.314 4.314 27 C -0.119 4.119 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.395 0.605 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.121 0.879 43 H 0.284 0.716 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 -23.586 -11.675 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.326 6.326 4 C 0.040 3.960 5 H 0.093 0.907 6 C -0.174 4.174 7 C -0.145 4.145 8 C -0.173 4.173 9 C 0.058 3.942 10 H 0.105 0.895 11 N -0.372 5.372 12 C 0.151 3.849 13 C -0.279 4.279 14 C -0.044 4.044 15 C -0.272 4.272 16 C 0.108 3.892 17 O -0.153 6.153 18 C -0.471 4.471 19 H 0.095 0.905 20 C -0.190 4.190 21 N -0.568 5.568 22 Si 0.794 3.206 23 H -0.190 1.190 24 H -0.192 1.192 25 H -0.187 1.187 26 C -0.337 4.337 27 C -0.157 4.157 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.229 0.771 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.139 0.861 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.085 0.915 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.161 -23.350 -11.581 27.312 hybrid contribution -0.059 1.260 0.445 1.337 sum -8.219 -22.090 -11.137 26.068 Atomic orbital electron populations 1.21775 0.93313 1.03285 1.02479 1.22696 0.96065 0.82980 1.00909 1.87904 1.21421 1.28025 1.95225 1.21978 0.80793 0.97271 0.95912 0.90693 1.22018 0.96196 1.02878 0.96288 1.21416 0.94611 0.97102 1.01354 1.22056 1.01250 0.98924 0.95119 1.20849 0.93635 0.87161 0.92537 0.89461 1.44814 1.13808 1.17854 1.60727 1.17570 0.85895 0.92224 0.89172 1.20639 0.95503 0.99242 1.12468 1.20897 0.95597 0.95637 0.92319 1.20321 1.00469 0.94174 1.12206 1.19410 0.93076 0.86719 0.89988 1.83519 1.46047 1.19665 1.66064 1.20682 0.98499 0.88427 1.39542 0.90474 1.25299 1.02965 0.93272 0.97504 1.69736 1.38064 1.02546 1.46428 0.85204 0.78186 0.78577 0.78656 1.19042 1.19182 1.18710 1.20582 0.99198 1.00077 1.13892 1.21749 0.94298 0.98542 1.01150 0.92356 0.89167 0.92741 0.92156 0.92720 0.90394 0.92106 0.90307 0.90325 0.91799 0.92623 0.77103 0.83799 0.82375 0.86083 0.90662 0.88109 0.91514 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.05 0.66 6.47 71.98 0.47 1.13 16 3 O -0.41 -7.82 9.99 -148.98 -1.49 -9.31 16 4 C 0.10 1.63 2.61 30.60 0.08 1.71 16 5 H 0.08 1.04 7.79 -2.39 -0.02 1.02 16 6 C -0.14 -1.93 5.54 30.59 0.17 -1.76 16 7 C -0.11 -1.44 5.92 30.60 0.18 -1.25 16 8 C -0.13 -2.58 5.44 30.60 0.17 -2.42 16 9 C 0.16 3.47 2.15 44.99 0.10 3.56 16 10 H 0.09 1.73 6.48 -2.38 -0.02 1.72 16 11 N -0.74 -21.68 5.25 -319.02 -1.67 -23.36 16 12 C 0.26 9.16 6.63 38.20 0.25 9.42 16 13 C -0.26 -7.78 8.85 22.43 0.20 -7.58 16 14 C -0.03 -0.81 10.03 22.23 0.22 -0.58 16 15 C -0.25 -9.99 9.99 22.42 0.22 -9.76 16 16 C 0.16 7.73 6.65 22.56 0.15 7.88 16 17 O -0.25 -13.88 8.58 -22.67 -0.19 -14.08 16 18 C -0.40 -24.10 9.94 67.92 0.68 -23.42 16 19 H 0.08 4.96 5.43 -2.91 -0.02 4.94 16 20 C 0.01 0.44 5.49 84.83 0.47 0.90 16 21 N -0.93 -56.81 13.96 21.61 0.30 -56.50 16 22 Si 0.97 46.74 28.62 68.60 1.96 48.70 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 26 C -0.31 -14.43 9.01 22.52 0.20 -14.22 16 27 C -0.12 -2.39 5.04 30.59 0.15 -2.23 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.64 7.87 -2.39 -0.02 0.62 16 32 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 33 H 0.08 0.90 7.87 -2.39 -0.02 0.88 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.36 7.71 -2.39 -0.02 1.35 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.40 11.78 8.61 -92.71 -0.80 10.98 16 40 H 0.14 3.35 6.11 -2.91 -0.02 3.33 16 41 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.28 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.10 5.16 5.63 -2.91 -0.02 5.14 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -69.91 367.05 3.53 -66.38 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.17 Total: 27.84 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 4.45 Total: -39.68 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -1.37 Total: -79.86 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -1.68 Total: -23.38 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.96 Total: 48.70 kcal Total: -69.91 3.53 -66.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721165584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.136 kcal (2) G-P(sol) polarization free energy of solvation -69.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds