Wall clock time and date at job start Tue Mar 31 2020 09:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42906 * 109.47270 * 2 1 4 4 C 1.42901 * 114.00201 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46738 * 30.00367 * 4 3 2 6 6 C 1.52993 * 109.47451 * 270.00252 * 4 3 2 7 7 C 1.53001 * 109.47542 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47033 * 59.99687 * 7 6 4 9 9 C 1.53003 * 109.47205 * 300.00510 * 8 7 6 10 10 H 1.09001 * 109.47213 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47153 * 299.99885 * 9 8 7 12 12 C 1.39784 * 120.00140 * 275.00229 * 11 9 8 13 13 C 1.38946 * 120.00488 * 359.72086 * 12 11 9 14 14 C 1.38015 * 119.99368 * 179.76615 * 13 12 11 15 15 C 1.38900 * 120.00370 * 0.51215 * 14 13 12 16 16 O 1.35789 * 119.99452 * 179.76465 * 15 14 13 17 17 C 1.34821 * 117.00081 * 174.43705 * 16 15 14 18 18 H 1.07992 * 119.99949 * 5.05021 * 17 16 15 19 19 C 1.38626 * 119.99702 * 185.05785 * 17 16 15 20 20 N 1.31576 * 120.00158 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99523 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47036 * 89.99923 * 21 19 17 23 23 H 1.48498 * 109.46934 * 209.99647 * 21 19 17 24 24 H 1.48496 * 109.47601 * 329.99776 * 21 19 17 25 25 C 1.38909 * 120.01340 * 359.74429 * 15 14 13 26 26 C 1.38006 * 120.00113 * 359.97438 * 25 15 14 27 27 C 1.52996 * 109.46796 * 150.00140 * 4 3 2 28 28 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47825 * 299.99948 * 1 2 3 30 30 H 1.09000 * 109.47273 * 59.99956 * 1 2 3 31 31 H 1.08995 * 109.47825 * 240.00052 * 2 1 3 32 32 H 1.09009 * 109.47297 * 119.99757 * 2 1 3 33 33 H 1.09001 * 109.47220 * 59.99746 * 6 4 3 34 34 H 1.09004 * 109.47065 * 300.00369 * 6 4 3 35 35 H 1.08990 * 109.47424 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46507 * 299.99802 * 7 6 4 37 37 H 1.09001 * 109.47622 * 60.00196 * 8 7 6 38 38 H 1.08996 * 109.47097 * 180.02562 * 8 7 6 39 39 H 0.97001 * 119.99629 * 94.99884 * 11 9 8 40 40 H 1.07995 * 120.00635 * 0.02562 * 13 12 11 41 41 H 1.07998 * 120.00036 * 180.27290 * 14 13 12 42 42 H 0.96999 * 120.00167 * 179.97438 * 20 19 17 43 43 H 1.07989 * 119.99398 * 179.97438 * 25 15 14 44 44 H 1.07998 * 120.00133 * 180.02562 * 26 25 15 45 45 H 1.09000 * 109.47202 * 300.00105 * 27 4 3 46 46 H 1.09004 * 109.47380 * 60.00392 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8634 0.6016 -0.5130 6 6 3.9387 1.5006 1.4432 7 6 5.4639 1.6221 1.4438 8 6 5.8734 2.9078 0.7228 9 6 5.3655 2.8674 -0.7199 10 1 5.6576 3.7832 -1.2338 11 7 5.9475 1.7138 -1.4104 12 6 7.2109 1.8162 -1.9996 13 6 7.9124 3.0138 -1.9355 14 6 9.1619 3.1133 -2.5132 15 6 9.7136 2.0194 -3.1677 16 8 10.9409 2.1189 -3.7401 17 6 11.4679 0.9912 -4.2582 18 1 10.8843 0.0829 -4.2798 19 6 12.7590 0.9979 -4.7629 20 7 13.4699 2.1048 -4.7369 21 14 13.4894 -0.5647 -5.4800 22 1 13.1876 -0.6309 -6.9325 23 1 14.9608 -0.5604 -5.2799 24 1 12.9005 -1.7449 -4.7978 25 6 9.0102 0.8235 -3.2366 26 6 7.7632 0.7219 -2.6541 27 6 3.8408 2.7457 -0.7206 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.6466 0.5848 1.9571 34 1 3.5060 2.3592 1.9568 35 1 5.8256 1.6513 2.4716 36 1 5.8969 0.7637 0.9301 37 1 5.4404 3.7662 1.2364 38 1 6.9599 2.9941 0.7228 39 1 5.4560 0.8788 -1.4586 40 1 7.4819 3.8656 -1.4301 41 1 9.7092 4.0428 -2.4596 42 1 14.3734 2.1093 -5.0897 43 1 9.4392 -0.0266 -3.7459 44 1 7.2165 -0.2079 -2.7072 45 1 3.4790 2.7169 -1.7484 46 1 3.4081 3.6043 -0.2071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721166029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:20 Heat of formation + Delta-G solvation = -59.141473 kcal Electronic energy + Delta-G solvation = -24793.699897 eV Core-core repulsion = 21262.441750 eV Total energy + Delta-G solvation = -3531.258146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.99611 -38.82362 -37.53827 -36.18654 -33.37475 -32.03209 -31.80559 -30.41468 -29.98752 -29.06582 -26.86249 -25.05094 -23.33337 -22.92077 -22.40819 -21.66529 -21.03368 -19.22503 -17.81130 -17.41649 -16.89627 -16.05903 -16.00568 -15.75651 -15.15891 -14.56059 -14.43940 -14.10835 -13.88907 -13.75594 -13.51859 -13.33444 -13.13522 -12.71983 -12.52035 -12.42436 -12.30907 -12.23717 -11.97368 -11.86862 -11.57331 -11.53054 -11.18661 -11.16766 -11.00155 -10.76789 -10.67681 -10.58535 -10.42062 -10.28480 -9.65702 -9.22899 -9.13532 -8.42918 -8.15155 -6.37969 -6.30932 -3.88272 2.22080 2.59399 3.19006 3.19767 3.24289 3.34611 3.81500 4.07000 4.48923 4.52681 4.69768 4.72953 4.77997 4.89249 5.01223 5.03646 5.04319 5.11084 5.21132 5.29154 5.36151 5.41495 5.43380 5.51523 5.57131 5.65596 5.70416 5.74104 5.79018 5.81864 5.85050 5.97626 6.07735 6.17384 6.18666 6.24846 6.31502 6.56893 6.88150 6.93545 6.99510 7.15854 7.33781 7.47052 7.66238 7.99968 8.13351 8.25031 9.14865 9.89797 10.87661 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.002576 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.228554 B =10868.585999 C =11418.081576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.385 6.385 4 C 0.093 3.907 5 H 0.058 0.942 6 C -0.138 4.138 7 C -0.112 4.112 8 C -0.139 4.139 9 C 0.164 3.836 10 H 0.081 0.919 11 N -0.753 5.753 12 C 0.127 3.873 13 C -0.146 4.146 14 C -0.150 4.150 15 C 0.113 3.887 16 O -0.189 6.189 17 C -0.386 4.386 18 H 0.088 0.912 19 C 0.035 3.965 20 N -0.869 5.869 21 Si 0.937 3.063 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.269 1.269 25 C -0.190 4.190 26 C -0.143 4.143 27 C -0.121 4.121 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.387 0.613 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.267 0.733 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.707 -2.534 11.050 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.304 6.304 4 C 0.035 3.965 5 H 0.076 0.924 6 C -0.176 4.176 7 C -0.150 4.150 8 C -0.178 4.178 9 C 0.057 3.943 10 H 0.099 0.901 11 N -0.389 5.389 12 C 0.029 3.971 13 C -0.168 4.168 14 C -0.170 4.170 15 C 0.060 3.940 16 O -0.094 6.094 17 C -0.463 4.463 18 H 0.105 0.895 19 C -0.167 4.167 20 N -0.506 5.506 21 Si 0.763 3.237 22 H -0.201 1.201 23 H -0.204 1.204 24 H -0.194 1.194 25 C -0.210 4.210 26 C -0.166 4.166 27 C -0.159 4.159 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.221 0.779 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.077 0.923 43 H 0.144 0.856 44 H 0.122 0.878 45 H 0.092 0.908 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.448 -1.932 11.004 24.183 hybrid contribution 0.335 -1.494 -0.330 1.566 sum -21.113 -3.426 10.675 23.905 Atomic orbital electron populations 1.21738 0.93854 1.02161 1.03064 1.22487 0.95491 0.84086 0.99990 1.87910 1.21194 1.26209 1.95103 1.22058 0.80569 0.98342 0.95536 0.92363 1.22037 0.96512 1.02272 0.96797 1.21394 0.94260 0.98931 1.00412 1.22080 1.02020 0.97606 0.96103 1.20645 0.90740 0.90768 0.92133 0.90107 1.44356 1.17728 1.13488 1.63323 1.17379 0.86605 0.94436 0.98697 1.20199 0.95285 0.96058 1.05237 1.20037 0.96138 0.98114 1.02729 1.19242 0.87560 0.93298 0.93865 1.83986 1.25805 1.34643 1.64964 1.21224 0.97913 0.88309 1.38843 0.89498 1.25212 0.95286 0.98609 0.97627 1.70046 1.10282 1.26323 1.43923 0.85770 0.78436 0.80351 0.79175 1.20078 1.20420 1.19402 1.20980 0.95571 0.98894 1.05515 1.20213 0.96589 0.96809 1.02941 1.21845 0.95243 0.97551 1.01269 0.91218 0.91935 0.91860 0.93422 0.93540 0.92239 0.91234 0.91995 0.91471 0.91670 0.90955 0.77880 0.87030 0.86588 0.92325 0.85604 0.87840 0.90793 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.15 0.38 -0.62 16 2 C 0.06 0.45 6.47 37.15 0.24 0.69 16 3 O -0.38 -3.93 9.99 -35.23 -0.35 -4.28 16 4 C 0.09 0.87 2.44 -26.74 -0.07 0.81 16 5 H 0.06 0.55 6.15 -51.93 -0.32 0.23 16 6 C -0.14 -1.23 5.54 -26.73 -0.15 -1.38 16 7 C -0.11 -1.08 5.77 -26.73 -0.15 -1.24 16 8 C -0.14 -1.43 5.56 -26.73 -0.15 -1.58 16 9 C 0.16 1.77 2.48 -67.95 -0.17 1.61 16 10 H 0.08 0.93 6.47 -51.93 -0.34 0.59 16 11 N -0.75 -9.64 4.41 -52.14 -0.23 -9.87 16 12 C 0.13 2.12 6.64 -83.71 -0.56 1.56 16 13 C -0.15 -2.58 8.86 -39.40 -0.35 -2.93 16 14 C -0.15 -3.20 9.98 -39.42 -0.39 -3.59 16 15 C 0.11 2.76 6.65 -39.09 -0.26 2.50 16 16 O -0.19 -5.50 9.76 -0.05 0.00 -5.50 16 17 C -0.39 -11.02 9.48 30.88 0.29 -10.73 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 19 C 0.04 1.00 5.49 -17.52 -0.10 0.90 16 20 N -0.87 -26.10 13.67 55.48 0.76 -25.34 16 21 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 C -0.19 -4.16 9.16 -39.42 -0.36 -4.52 16 26 C -0.14 -2.62 9.89 -39.40 -0.39 -3.01 16 27 C -0.12 -1.16 5.25 -26.76 -0.14 -1.31 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.05 0.34 7.87 -51.92 -0.41 -0.07 16 33 H 0.06 0.50 7.87 -51.93 -0.41 0.10 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.73 7.60 -51.93 -0.39 0.33 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.87 7.74 -51.93 -0.40 0.47 16 39 H 0.39 4.51 6.88 -40.82 -0.28 4.23 16 40 H 0.11 1.68 6.13 -52.49 -0.32 1.36 16 41 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.13 2.78 5.63 -52.49 -0.30 2.48 16 44 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -31.23 363.82 -8.90 -40.13 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.22 Total: 6.22 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -2.32 Total: -22.83 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.53 Total: -35.21 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.35 Total: -9.79 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.23 -8.90 -40.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721166029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.011 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds