Wall clock time and date at job start Tue Mar 31 2020 09:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42906 * 109.47270 * 2 1 4 4 C 1.42901 * 114.00201 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.46738 * 30.00367 * 4 3 2 6 6 C 1.52993 * 109.47451 * 270.00252 * 4 3 2 7 7 C 1.53001 * 109.47542 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47033 * 59.99687 * 7 6 4 9 9 C 1.53003 * 109.47205 * 300.00510 * 8 7 6 10 10 H 1.09001 * 109.47213 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47153 * 299.99885 * 9 8 7 12 12 C 1.39784 * 120.00140 * 275.00229 * 11 9 8 13 13 C 1.38946 * 120.00488 * 359.72086 * 12 11 9 14 14 C 1.38015 * 119.99368 * 179.76615 * 13 12 11 15 15 C 1.38900 * 120.00370 * 0.51215 * 14 13 12 16 16 O 1.35789 * 119.99452 * 179.76465 * 15 14 13 17 17 C 1.34821 * 117.00081 * 174.43705 * 16 15 14 18 18 H 1.07992 * 119.99949 * 5.05021 * 17 16 15 19 19 C 1.38626 * 119.99702 * 185.05785 * 17 16 15 20 20 N 1.31576 * 120.00158 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99523 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47036 * 89.99923 * 21 19 17 23 23 H 1.48498 * 109.46934 * 209.99647 * 21 19 17 24 24 H 1.48496 * 109.47601 * 329.99776 * 21 19 17 25 25 C 1.38909 * 120.01340 * 359.74429 * 15 14 13 26 26 C 1.38006 * 120.00113 * 359.97438 * 25 15 14 27 27 C 1.52996 * 109.46796 * 150.00140 * 4 3 2 28 28 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47825 * 299.99948 * 1 2 3 30 30 H 1.09000 * 109.47273 * 59.99956 * 1 2 3 31 31 H 1.08995 * 109.47825 * 240.00052 * 2 1 3 32 32 H 1.09009 * 109.47297 * 119.99757 * 2 1 3 33 33 H 1.09001 * 109.47220 * 59.99746 * 6 4 3 34 34 H 1.09004 * 109.47065 * 300.00369 * 6 4 3 35 35 H 1.08990 * 109.47424 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46507 * 299.99802 * 7 6 4 37 37 H 1.09001 * 109.47622 * 60.00196 * 8 7 6 38 38 H 1.08996 * 109.47097 * 180.02562 * 8 7 6 39 39 H 0.97001 * 119.99629 * 94.99884 * 11 9 8 40 40 H 1.07995 * 120.00635 * 0.02562 * 13 12 11 41 41 H 1.07998 * 120.00036 * 180.27290 * 14 13 12 42 42 H 0.96999 * 120.00167 * 179.97438 * 20 19 17 43 43 H 1.07989 * 119.99398 * 179.97438 * 25 15 14 44 44 H 1.07998 * 120.00133 * 180.02562 * 26 25 15 45 45 H 1.09000 * 109.47202 * 300.00105 * 27 4 3 46 46 H 1.09004 * 109.47380 * 60.00392 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8634 0.6016 -0.5130 6 6 3.9387 1.5006 1.4432 7 6 5.4639 1.6221 1.4438 8 6 5.8734 2.9078 0.7228 9 6 5.3655 2.8674 -0.7199 10 1 5.6576 3.7832 -1.2338 11 7 5.9475 1.7138 -1.4104 12 6 7.2109 1.8162 -1.9996 13 6 7.9124 3.0138 -1.9355 14 6 9.1619 3.1133 -2.5132 15 6 9.7136 2.0194 -3.1677 16 8 10.9409 2.1189 -3.7401 17 6 11.4679 0.9912 -4.2582 18 1 10.8843 0.0829 -4.2798 19 6 12.7590 0.9979 -4.7629 20 7 13.4699 2.1048 -4.7369 21 14 13.4894 -0.5647 -5.4800 22 1 13.1876 -0.6309 -6.9325 23 1 14.9608 -0.5604 -5.2799 24 1 12.9005 -1.7449 -4.7978 25 6 9.0102 0.8235 -3.2366 26 6 7.7632 0.7219 -2.6541 27 6 3.8408 2.7457 -0.7206 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.6466 0.5848 1.9571 34 1 3.5060 2.3592 1.9568 35 1 5.8256 1.6513 2.4716 36 1 5.8969 0.7637 0.9301 37 1 5.4404 3.7662 1.2364 38 1 6.9599 2.9941 0.7228 39 1 5.4560 0.8788 -1.4586 40 1 7.4819 3.8656 -1.4301 41 1 9.7092 4.0428 -2.4596 42 1 14.3734 2.1093 -5.0897 43 1 9.4392 -0.0266 -3.7459 44 1 7.2165 -0.2079 -2.7072 45 1 3.4790 2.7169 -1.7484 46 1 3.4081 3.6043 -0.2071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721166029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:19 Heat of formation + Delta-G solvation = -77.512958 kcal Electronic energy + Delta-G solvation = -24794.496544 eV Core-core repulsion = 21262.441750 eV Total energy + Delta-G solvation = -3532.054794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05495 -40.29295 -38.73738 -37.49954 -34.69837 -33.92277 -32.45261 -31.87672 -31.08258 -29.90945 -28.41071 -26.97387 -24.26014 -23.79256 -23.22831 -22.90300 -22.52651 -20.36002 -19.50753 -18.77905 -18.30282 -17.25947 -16.84453 -16.59097 -16.29046 -16.17025 -15.63835 -15.41863 -15.26597 -15.20826 -14.67437 -14.42656 -14.25204 -14.02629 -13.82942 -13.53986 -13.35781 -13.26595 -13.07823 -13.04094 -12.72367 -12.61808 -12.54739 -12.39684 -12.20675 -12.08314 -11.89878 -11.54384 -11.51530 -11.23927 -11.06224 -10.87794 -10.37607 -10.11541 -9.74796 -8.38461 -7.90500 -6.01800 0.61159 0.96176 1.36701 1.46613 1.54065 2.23104 2.63131 2.69350 2.93018 3.27445 3.68675 3.73296 3.78870 4.01993 4.13331 4.14571 4.19258 4.21656 4.24130 4.31016 4.39139 4.49671 4.53846 4.57795 4.63859 4.66219 4.70615 4.83353 4.91892 5.01902 5.02359 5.07389 5.09513 5.13855 5.16842 5.27419 5.29381 5.34072 5.37355 5.42388 5.53794 5.58399 5.80911 6.01367 6.12897 6.32290 6.65227 7.02616 7.07788 7.95155 8.86130 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026680 B = 0.002576 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.228554 B =10868.585999 C =11418.081576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.400 6.400 4 C 0.092 3.908 5 H 0.059 0.941 6 C -0.132 4.132 7 C -0.109 4.109 8 C -0.137 4.137 9 C 0.161 3.839 10 H 0.081 0.919 11 N -0.738 5.738 12 C 0.159 3.841 13 C -0.143 4.143 14 C -0.156 4.156 15 C 0.061 3.939 16 O -0.243 6.243 17 C -0.404 4.404 18 H 0.098 0.902 19 C -0.030 4.030 20 N -0.927 5.927 21 Si 1.017 2.983 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.193 4.193 26 C -0.147 4.147 27 C -0.114 4.114 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.398 0.602 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.269 0.731 43 H 0.117 0.883 44 H 0.136 0.864 45 H 0.070 0.930 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.674 -3.884 12.314 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.320 6.320 4 C 0.035 3.965 5 H 0.077 0.923 6 C -0.170 4.170 7 C -0.147 4.147 8 C -0.176 4.176 9 C 0.055 3.945 10 H 0.099 0.901 11 N -0.373 5.373 12 C 0.058 3.942 13 C -0.165 4.165 14 C -0.175 4.175 15 C 0.011 3.989 16 O -0.151 6.151 17 C -0.481 4.481 18 H 0.115 0.885 19 C -0.226 4.226 20 N -0.567 5.567 21 Si 0.836 3.164 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.178 1.178 25 C -0.213 4.213 26 C -0.170 4.170 27 C -0.152 4.152 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.234 0.766 40 H 0.161 0.839 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.135 0.865 44 H 0.154 0.846 45 H 0.088 0.912 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.517 -3.290 12.313 27.632 hybrid contribution 0.865 -1.005 -0.515 1.423 sum -23.652 -4.295 11.798 26.778 Atomic orbital electron populations 1.21753 0.92989 1.03205 1.02699 1.22662 0.96284 0.83265 1.00503 1.87891 1.21371 1.27535 1.95196 1.22057 0.80565 0.98118 0.95785 0.92303 1.21969 0.95717 1.02714 0.96552 1.21360 0.94799 0.97994 1.00563 1.22052 1.00993 0.98822 0.95717 1.20822 0.91680 0.89691 0.92294 0.90096 1.44459 1.16025 1.14847 1.61946 1.17475 0.87383 0.93332 0.96037 1.20452 0.93912 0.97611 1.04530 1.20248 0.97430 0.97259 1.02595 1.19744 0.87204 0.95569 0.96366 1.83934 1.28269 1.35406 1.67535 1.21736 0.98624 0.88863 1.38888 0.88515 1.26526 0.95446 1.02608 0.98008 1.70203 1.10902 1.29185 1.46386 0.84614 0.77464 0.75729 0.78564 1.18962 1.19780 1.17778 1.21031 0.96817 0.97691 1.05755 1.20465 0.95452 0.98673 1.02378 1.21765 0.93862 0.98276 1.01319 0.89522 0.92128 0.92373 0.93080 0.92826 0.91695 0.90967 0.91387 0.92594 0.89831 0.92614 0.76635 0.83879 0.87032 0.92190 0.86544 0.84626 0.91159 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.66 6.47 71.98 0.47 1.13 16 3 O -0.40 -7.07 9.99 -148.98 -1.49 -8.55 16 4 C 0.09 1.45 2.44 30.59 0.07 1.52 16 5 H 0.06 0.90 6.15 -2.39 -0.01 0.89 16 6 C -0.13 -1.91 5.54 30.59 0.17 -1.74 16 7 C -0.11 -1.77 5.77 30.59 0.18 -1.60 16 8 C -0.14 -2.37 5.56 30.59 0.17 -2.20 16 9 C 0.16 2.93 2.48 44.98 0.11 3.04 16 10 H 0.08 1.55 6.47 -2.39 -0.02 1.53 16 11 N -0.74 -16.36 4.41 -318.87 -1.41 -17.77 16 12 C 0.16 4.90 6.64 38.21 0.25 5.16 16 13 C -0.14 -4.83 8.86 22.39 0.20 -4.63 16 14 C -0.16 -6.75 9.98 22.38 0.22 -6.53 16 15 C 0.06 3.10 6.65 22.59 0.15 3.25 16 16 O -0.24 -15.09 9.76 -23.08 -0.23 -15.31 16 17 C -0.40 -24.23 9.48 67.91 0.64 -23.59 16 18 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 19 C -0.03 -1.75 5.49 84.82 0.47 -1.28 16 20 N -0.93 -58.57 13.67 21.61 0.30 -58.27 16 21 Si 1.02 44.17 29.55 68.60 2.03 46.20 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 25 C -0.19 -8.57 9.16 22.38 0.20 -8.37 16 26 C -0.15 -5.11 9.89 22.39 0.22 -4.89 16 27 C -0.11 -1.81 5.25 30.58 0.16 -1.65 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 32 H 0.05 0.64 7.87 -2.38 -0.02 0.62 16 33 H 0.06 0.89 7.87 -2.39 -0.02 0.88 16 34 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.04 7.60 -2.38 -0.02 1.02 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.18 7.74 -2.39 -0.02 1.16 16 39 H 0.40 7.71 6.88 -92.71 -0.64 7.07 16 40 H 0.14 3.91 6.13 -2.91 -0.02 3.89 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.12 5.28 5.63 -2.92 -0.02 5.26 16 44 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -72.11 363.82 3.97 -68.14 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.34 Total: 28.85 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 4.43 Total: -43.29 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.11 Total: -76.04 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -1.71 Total: -23.87 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.11 3.97 -68.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721166029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.376 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds