Wall clock time and date at job start Tue Mar 31 2020 09:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47193 * 2 1 4 4 C 1.42895 * 114.00480 * 180.02562 * 3 2 1 5 5 C 1.53126 * 109.52422 * 269.87671 * 4 3 2 6 6 C 1.53045 * 109.27412 * 182.50362 * 5 4 3 7 7 N 1.46837 * 109.57893 * 59.08336 * 6 5 4 8 8 C 1.46904 * 111.00352 * 174.19195 * 7 6 5 9 9 C 1.50698 * 109.46676 * 294.21133 * 8 7 6 10 10 C 1.38301 * 119.92730 * 269.71978 * 9 8 7 11 11 C 1.38107 * 120.06533 * 179.72855 * 10 9 8 12 12 C 1.38878 * 119.92957 * 0.55322 * 11 10 9 13 13 O 1.35750 * 120.06940 * 179.75066 * 12 11 10 14 14 C 1.34828 * 117.00471 * 174.44047 * 13 12 11 15 15 H 1.08001 * 119.99525 * 5.04821 * 14 13 12 16 16 C 1.38649 * 120.00543 * 185.05528 * 14 13 12 17 17 N 1.31556 * 120.00005 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99771 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46866 * 90.00309 * 18 16 14 20 20 H 1.48497 * 109.46975 * 210.00054 * 18 16 14 21 21 H 1.48500 * 109.47029 * 330.00181 * 18 16 14 22 22 C 1.38881 * 119.86192 * 359.71956 * 12 11 10 23 23 C 1.38091 * 119.93080 * 0.02562 * 22 12 11 24 24 C 1.46854 * 111.20015 * 298.29003 * 7 6 5 25 25 C 1.53037 * 109.52332 * 61.73935 * 24 7 6 26 26 H 1.09000 * 109.46841 * 299.99567 * 1 2 3 27 27 H 1.09002 * 109.46849 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47188 * 60.00051 * 1 2 3 29 29 H 1.08997 * 109.47733 * 120.00412 * 2 1 3 30 30 H 1.09000 * 109.47297 * 240.00155 * 2 1 3 31 31 H 1.08995 * 109.52208 * 30.00194 * 4 3 2 32 32 H 1.09002 * 109.49915 * 302.37805 * 5 4 3 33 33 H 1.08997 * 109.50287 * 62.49520 * 5 4 3 34 34 H 1.09001 * 109.40849 * 299.06414 * 6 5 4 35 35 H 1.09002 * 109.45330 * 179.12681 * 6 5 4 36 36 H 1.09000 * 109.47047 * 54.20970 * 8 7 6 37 37 H 1.09004 * 109.47066 * 174.20726 * 8 7 6 38 38 H 1.07992 * 119.96957 * 0.02562 * 10 9 8 39 39 H 1.07999 * 120.03456 * 180.27784 * 11 10 9 40 40 H 0.97010 * 119.99888 * 179.97438 * 17 16 14 41 41 H 1.07999 * 120.03051 * 179.97438 * 22 12 11 42 42 H 1.08003 * 119.96505 * 180.02562 * 23 22 12 43 43 H 1.09001 * 109.45913 * 301.72464 * 24 7 6 44 44 H 1.08993 * 109.46380 * 181.75744 * 24 7 6 45 45 H 1.08997 * 109.50538 * 180.88246 * 25 24 7 46 46 H 1.09005 * 109.50142 * 60.76351 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9413 1.5035 1.4424 6 6 5.4607 1.6872 1.4354 7 7 5.8025 2.9331 0.7375 8 6 7.2419 3.2113 0.8312 9 6 7.6077 3.4863 2.2670 10 6 7.5663 4.7801 2.7539 11 6 7.8956 5.0347 4.0708 12 6 8.2798 3.9914 4.9031 13 8 8.6089 4.2391 6.1966 14 6 8.8607 3.1708 6.9796 15 1 8.8762 2.1793 6.5516 16 6 9.0997 3.3449 8.3342 17 7 9.3449 2.3023 9.0982 18 14 9.0734 5.0598 9.0743 19 1 7.6969 5.3815 9.5291 20 1 10.0024 5.1137 10.2316 21 1 9.5001 6.0473 8.0506 22 6 8.3258 2.6941 4.4095 23 6 7.9903 2.4453 3.0933 24 6 5.3642 2.8943 -0.6636 25 6 3.8418 2.7482 -0.7194 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8640 0.6022 -0.5146 32 1 3.4771 2.3382 1.9677 33 1 3.6889 0.5703 1.9459 34 1 5.9251 0.8447 0.9231 35 1 5.8254 1.7340 2.4616 36 1 7.8028 2.3485 0.4722 37 1 7.4842 4.0816 0.2213 38 1 7.2715 5.5915 2.1051 39 1 7.8587 6.0446 4.4517 40 1 9.5124 2.4242 10.0459 41 1 8.6246 1.8808 5.0542 42 1 8.0255 1.4366 2.7090 43 1 5.8291 2.0461 -1.1662 44 1 5.6589 3.8177 -1.1620 45 1 3.5183 2.7037 -1.7593 46 1 3.3760 3.6031 -0.2290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729268237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:59 Heat of formation + Delta-G solvation = -70.187741 kcal Electronic energy + Delta-G solvation = -24706.930954 eV Core-core repulsion = 21175.193805 eV Total energy + Delta-G solvation = -3531.737148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.04596 -40.34553 -38.87990 -37.76077 -34.57457 -34.05414 -32.06292 -31.91120 -31.64370 -30.49619 -27.61677 -26.16771 -24.39048 -23.81621 -23.53805 -23.31185 -21.76490 -20.79904 -19.79092 -19.07485 -17.91337 -16.96795 -16.71305 -16.54852 -16.48163 -16.05798 -15.71032 -15.54531 -15.42752 -15.13599 -14.80639 -14.67495 -14.33125 -14.19899 -14.08707 -13.90021 -13.38415 -13.12852 -13.09976 -12.99424 -12.82117 -12.55390 -12.43371 -12.33462 -12.18537 -12.08783 -11.94900 -11.83617 -11.56579 -11.41170 -11.26377 -10.90212 -10.38716 -9.76826 -9.25861 -8.94140 -8.50606 -6.22906 0.58434 0.64003 1.30698 1.34948 1.51415 2.27664 2.66989 2.72314 2.95591 3.13969 3.29540 3.81032 3.81359 3.98629 4.02679 4.09661 4.16949 4.19188 4.28444 4.34911 4.36531 4.39566 4.48368 4.51058 4.58666 4.61768 4.72871 4.73652 4.83178 4.90080 4.95115 4.97973 5.01638 5.03031 5.08850 5.20603 5.24780 5.27386 5.34436 5.38296 5.59096 5.76999 5.81454 5.91475 6.13723 6.21345 6.29522 6.32946 6.84069 7.59359 8.61149 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.002803 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.764838 B = 9986.152263 C =10830.486398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.402 6.402 4 C 0.092 3.908 5 C -0.133 4.133 6 C 0.058 3.942 7 N -0.546 5.546 8 C 0.114 3.886 9 C -0.144 4.144 10 C -0.049 4.049 11 C -0.194 4.194 12 C 0.119 3.881 13 O -0.247 6.247 14 C -0.398 4.398 15 H 0.080 0.920 16 C 0.009 3.991 17 N -0.924 5.924 18 Si 0.971 3.029 19 H -0.267 1.267 20 H -0.267 1.267 21 H -0.263 1.263 22 C -0.237 4.237 23 C -0.066 4.066 24 C 0.061 3.939 25 C -0.108 4.108 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.127 0.873 40 H 0.284 0.716 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.043 0.957 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.053 -1.612 -23.611 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.322 6.322 4 C 0.034 3.966 5 C -0.172 4.172 6 C -0.070 4.070 7 N -0.271 5.271 8 C -0.013 4.013 9 C -0.145 4.145 10 C -0.067 4.067 11 C -0.213 4.213 12 C 0.070 3.930 13 O -0.154 6.154 14 C -0.474 4.474 15 H 0.098 0.902 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.793 3.207 19 H -0.192 1.192 20 H -0.191 1.191 21 H -0.187 1.187 22 C -0.257 4.257 23 C -0.084 4.084 24 C -0.066 4.066 25 C -0.146 4.146 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.119 0.881 38 H 0.170 0.830 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.357 -0.954 -23.080 26.197 hybrid contribution 0.778 -0.929 0.898 1.508 sum -11.579 -1.883 -22.182 25.093 Atomic orbital electron populations 1.21758 0.92993 1.03256 1.02645 1.22671 0.96323 0.83239 1.00502 1.87907 1.21503 1.27659 1.95127 1.22182 0.80603 0.98875 0.94890 1.22028 0.95324 1.01897 0.97924 1.22021 0.95167 0.90371 0.99470 1.61902 1.15818 1.34712 1.14645 1.20846 0.86950 1.01656 0.91800 1.19645 1.05196 0.92882 0.96809 1.20914 0.95546 0.97177 0.93080 1.20538 1.08492 0.97640 0.94618 1.19685 0.94269 0.94697 0.84341 1.83515 1.78878 1.34649 1.18384 1.20697 1.49410 0.86580 0.90762 0.90243 1.25280 0.95575 1.03015 0.95035 1.69733 1.48146 1.31587 1.07082 0.85217 0.78954 0.78495 0.78051 1.19154 1.19124 1.18700 1.21225 1.10240 0.96319 0.97876 1.20883 0.96585 0.99246 0.91735 1.22104 0.94337 1.02352 0.87826 1.21615 0.95319 0.96671 1.00967 0.92744 0.89345 0.91906 0.93496 0.92296 0.91489 0.92312 0.91507 0.94104 0.91709 0.93519 0.88093 0.83026 0.85541 0.90590 0.87680 0.85398 0.93832 0.88514 0.89491 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.05 0.77 6.47 71.98 0.47 1.24 16 3 O -0.40 -8.44 9.99 -148.98 -1.49 -9.93 16 4 C 0.09 1.73 2.68 30.68 0.08 1.81 16 5 C -0.13 -2.97 5.72 30.65 0.18 -2.80 16 6 C 0.06 1.32 5.15 86.33 0.44 1.77 16 7 N -0.55 -11.64 4.65 -900.91 -4.19 -15.83 16 8 C 0.11 2.42 5.12 85.56 0.44 2.86 16 9 C -0.14 -4.24 4.89 -19.83 -0.10 -4.34 16 10 C -0.05 -1.50 9.69 22.25 0.22 -1.29 16 11 C -0.19 -7.50 9.99 22.39 0.22 -7.28 16 12 C 0.12 5.65 6.65 22.58 0.15 5.80 16 13 O -0.25 -13.65 8.59 -22.72 -0.20 -13.84 16 14 C -0.40 -23.85 9.95 67.92 0.68 -23.17 16 15 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 16 C 0.01 0.53 5.49 84.83 0.47 1.00 16 17 N -0.92 -55.93 13.96 21.61 0.30 -55.63 16 18 Si 0.97 46.14 28.62 68.60 1.96 48.10 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.24 -10.53 9.17 22.39 0.21 -10.33 16 23 C -0.07 -2.26 7.87 22.25 0.17 -2.09 16 24 C 0.06 0.96 5.46 86.32 0.47 1.43 16 25 C -0.11 -1.81 5.75 30.65 0.18 -1.64 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.73 7.95 -2.39 -0.02 0.71 16 30 H 0.06 0.76 8.09 -2.39 -0.02 0.74 16 31 H 0.07 1.08 7.79 -2.39 -0.02 1.07 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.42 7.95 -2.39 -0.02 1.40 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 1.82 5.75 -2.39 -0.01 1.81 16 36 H 0.05 0.91 8.07 -2.39 -0.02 0.89 16 37 H 0.10 1.72 7.93 -2.38 -0.02 1.70 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 40 H 0.28 15.77 8.31 -92.70 -0.77 14.99 16 41 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 42 H 0.13 3.75 7.95 -2.91 -0.02 3.73 16 43 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.10 1.23 8.01 -2.39 -0.02 1.21 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -67.85 367.56 2.35 -65.50 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.95 Total: 19.86 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 5.01 Total: -38.24 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -3.89 Total: -71.46 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -1.68 Total: -23.77 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.96 Total: 48.10 kcal Total: -67.85 2.35 -65.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729268237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.683 kcal (2) G-P(sol) polarization free energy of solvation -67.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds