Wall clock time and date at job start Tue Mar 31 2020 09:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.47258 * 2 1 4 4 C 1.42893 * 114.00330 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50502 * 329.92108 * 4 3 2 6 6 C 1.53121 * 109.50341 * 90.00251 * 4 3 2 7 7 C 1.53121 * 109.15933 * 177.59905 * 6 4 3 8 8 C 1.53031 * 109.27605 * 302.34140 * 7 6 4 9 9 N 1.46848 * 109.52728 * 59.18034 * 8 7 6 10 10 C 1.46897 * 111.00517 * 174.15905 * 9 8 7 11 11 C 1.50708 * 109.46975 * 66.04549 * 10 9 8 12 12 C 1.38298 * 119.93184 * 269.73188 * 11 10 9 13 13 C 1.38094 * 120.06652 * 179.72611 * 12 11 10 14 14 C 1.38878 * 119.93315 * 0.54220 * 13 12 11 15 15 O 1.35756 * 120.07480 * 179.74776 * 14 13 12 16 16 C 1.34825 * 117.00046 * 174.44333 * 15 14 13 17 17 H 1.07993 * 120.00067 * 5.06085 * 16 15 14 18 18 C 1.38656 * 119.99809 * 185.05579 * 16 15 14 19 19 N 1.31559 * 120.00029 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00105 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46904 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47296 * 119.99897 * 20 18 16 23 23 H 1.48503 * 109.47481 * 240.00199 * 20 18 16 24 24 C 1.38880 * 119.85873 * 359.73200 * 14 13 12 25 25 C 1.38098 * 119.93054 * 359.97438 * 24 14 13 26 26 C 1.46850 * 111.19672 * 298.25947 * 9 8 7 27 27 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46965 * 299.99587 * 1 2 3 29 29 H 1.08993 * 109.47057 * 59.99697 * 1 2 3 30 30 H 1.09003 * 109.47504 * 120.00008 * 2 1 3 31 31 H 1.08993 * 109.47113 * 240.00124 * 2 1 3 32 32 H 1.09001 * 109.51855 * 297.49755 * 6 4 3 33 33 H 1.08998 * 109.52790 * 57.62469 * 6 4 3 34 34 H 1.08997 * 109.50713 * 62.28571 * 7 6 4 35 35 H 1.09003 * 109.49632 * 182.40318 * 7 6 4 36 36 H 1.08996 * 109.46307 * 179.20126 * 8 7 6 37 37 H 1.09006 * 109.46138 * 299.17439 * 8 7 6 38 38 H 1.08990 * 109.47536 * 186.05122 * 10 9 8 39 39 H 1.09009 * 109.47143 * 306.05114 * 10 9 8 40 40 H 1.08002 * 119.96612 * 359.97438 * 12 11 10 41 41 H 1.08004 * 120.03737 * 180.26917 * 13 12 11 42 42 H 0.96996 * 119.99809 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.03747 * 179.97438 * 24 14 13 44 44 H 1.08001 * 119.96379 * 180.02562 * 25 24 14 45 45 H 1.08997 * 109.46341 * 301.72377 * 26 9 8 46 46 H 1.08999 * 109.46012 * 181.75343 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8641 0.6025 0.5141 6 6 3.9399 1.5008 -1.4441 7 6 5.4603 1.6821 -1.4360 8 6 5.8122 2.9637 -0.6774 9 7 5.3045 2.8753 0.6977 10 6 5.7431 4.0277 1.4961 11 6 5.1056 5.2831 0.9585 12 6 5.7475 6.0178 -0.0217 13 6 5.1633 7.1654 -0.5203 14 6 3.9351 7.5877 -0.0283 15 8 3.3606 8.7183 -0.5128 16 6 2.1184 9.0090 -0.0764 17 1 1.6583 8.4002 0.6877 18 6 1.4320 10.0898 -0.6086 19 7 1.9924 10.8312 -1.5397 20 14 -0.2887 10.4931 -0.0036 21 1 -0.6885 9.5147 1.0395 22 1 -0.3031 11.8622 0.5711 23 1 -1.2421 10.4232 -1.1400 24 6 3.2957 6.8508 0.9601 25 6 3.8823 5.7007 1.4502 26 6 3.8416 2.7483 0.7164 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8935 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.6871 0.5668 -1.9459 33 1 3.4755 2.3345 -1.9709 34 1 5.9260 0.8283 -0.9438 35 1 5.8236 1.7546 -2.4612 36 1 6.8949 3.0883 -0.6575 37 1 5.3575 3.8186 -1.1780 38 1 5.4451 3.8849 2.5346 39 1 6.8280 4.1179 1.4385 40 1 6.7048 5.6914 -0.4005 41 1 5.6630 7.7364 -1.2889 42 1 1.5123 11.5874 -1.9118 43 1 2.3408 7.1768 1.3450 44 1 3.3854 5.1270 2.2186 45 1 3.3962 3.6041 0.2092 46 1 3.4931 2.7163 1.7487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738318165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:39 Heat of formation + Delta-G solvation = -54.740031 kcal Electronic energy + Delta-G solvation = -25368.495270 eV Core-core repulsion = 21837.427984 eV Total energy + Delta-G solvation = -3531.067286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.86954 -38.83790 -37.57723 -36.14470 -33.35605 -32.22577 -31.65726 -30.28728 -29.54734 -29.00865 -26.09727 -25.10293 -23.18744 -22.99680 -22.37496 -21.72472 -20.59496 -19.55934 -17.99729 -17.02213 -16.88187 -15.88175 -15.67555 -15.17906 -14.99634 -14.57867 -14.39866 -14.12069 -13.82169 -13.70505 -13.60352 -13.49555 -13.23220 -12.78895 -12.62078 -12.54515 -12.31780 -12.03522 -11.75070 -11.67008 -11.30342 -11.26095 -11.10837 -11.00579 -10.83522 -10.72491 -10.63116 -10.59748 -10.48962 -10.42550 -9.48755 -9.34257 -8.84612 -8.20590 -8.18771 -7.20069 -6.46766 -4.05501 2.19121 2.25652 3.11474 3.13452 3.18954 3.42444 3.95752 4.26896 4.57758 4.74242 4.80232 4.91436 4.96685 5.02314 5.07763 5.18257 5.22459 5.24984 5.26512 5.42716 5.45407 5.52428 5.54580 5.70407 5.72717 5.74543 5.82190 5.84386 5.89301 5.94246 5.97037 6.03114 6.10457 6.12789 6.18861 6.32664 6.39372 6.67775 6.87413 7.00222 7.06977 7.14313 7.24638 7.29219 7.39326 7.43092 7.80361 7.98488 8.99111 9.68677 10.71276 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.003817 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.999572 B = 7334.771252 C = 8756.046239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.382 6.382 4 C 0.096 3.904 5 H 0.064 0.936 6 C -0.143 4.143 7 C -0.112 4.112 8 C 0.047 3.953 9 N -0.528 5.528 10 C 0.111 3.889 11 C -0.224 4.224 12 C -0.063 4.063 13 C -0.195 4.195 14 C 0.157 3.843 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.275 1.275 24 C -0.234 4.234 25 C -0.057 4.057 26 C 0.057 3.943 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.057 0.943 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.426 -19.931 3.131 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.301 6.301 4 C 0.038 3.962 5 H 0.082 0.918 6 C -0.181 4.181 7 C -0.150 4.150 8 C -0.081 4.081 9 N -0.252 5.252 10 C -0.016 4.016 11 C -0.227 4.227 12 C -0.082 4.082 13 C -0.214 4.214 14 C 0.103 3.897 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.253 4.253 25 C -0.076 4.076 26 C -0.071 4.071 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.123 0.877 45 H 0.075 0.925 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.504 -19.828 3.047 20.365 hybrid contribution -1.136 0.771 -0.115 1.378 sum 2.368 -19.057 2.933 19.426 Atomic orbital electron populations 1.21747 0.93880 1.01970 1.03325 1.22459 0.95475 0.84112 0.99716 1.87927 1.21062 1.26048 1.95027 1.22025 0.80425 0.98521 0.95243 0.91815 1.22087 0.96333 1.02300 0.97337 1.21522 0.95137 0.98367 0.99991 1.22155 0.99908 0.97174 0.88822 1.62326 1.09908 1.40517 1.12436 1.20925 0.98972 0.85123 0.96534 1.19920 0.98320 1.00510 1.03916 1.20486 0.98036 0.93877 0.95766 1.20202 0.96459 0.99627 1.05152 1.19395 0.92294 0.86513 0.91520 1.83976 1.30128 1.33342 1.60630 1.21384 0.89402 1.13951 1.22048 0.89009 1.25293 0.99821 0.95458 0.95913 1.70048 1.37650 1.16784 1.25225 0.85649 0.80332 0.78778 0.78707 1.19062 1.20108 1.20090 1.21161 1.03016 0.98565 1.02565 1.20620 0.94220 0.95074 0.97715 1.21994 0.88165 0.96343 1.00596 0.91337 0.91791 0.91800 0.93578 0.93689 0.92148 0.91123 0.91444 0.91345 0.90889 0.93386 0.90740 0.90642 0.87361 0.86662 0.92051 0.85633 0.87725 0.92520 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.59 6.47 37.16 0.24 0.83 16 3 O -0.38 -5.12 9.99 -35.23 -0.35 -5.47 16 4 C 0.10 1.19 2.77 -26.65 -0.07 1.12 16 5 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 6 C -0.14 -1.67 5.62 -26.61 -0.15 -1.82 16 7 C -0.11 -1.19 6.09 -26.65 -0.16 -1.35 16 8 C 0.05 0.58 4.84 -3.84 -0.02 0.57 16 9 N -0.53 -6.83 4.86 -236.11 -1.15 -7.98 16 10 C 0.11 1.49 5.55 -4.97 -0.03 1.46 16 11 C -0.22 -3.73 4.04 -104.57 -0.42 -4.15 16 12 C -0.06 -1.10 8.12 -39.61 -0.32 -1.42 16 13 C -0.20 -4.13 9.99 -39.40 -0.39 -4.52 16 14 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 15 O -0.18 -5.12 9.76 0.05 0.00 -5.12 16 16 C -0.39 -11.06 9.49 30.89 0.29 -10.76 16 17 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -25.43 13.67 55.48 0.76 -24.68 16 20 Si 0.94 20.73 29.55 -169.99 -5.02 15.70 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 24 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 25 C -0.06 -1.05 8.00 -39.61 -0.32 -1.37 16 26 C 0.06 0.79 4.19 -3.83 -0.02 0.78 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.04 0.41 7.94 -51.93 -0.41 -0.01 16 32 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 38 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.08 0.92 8.00 -51.92 -0.42 0.50 16 40 H 0.11 1.60 8.04 -52.49 -0.42 1.17 16 41 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 44 H 0.10 1.69 8.02 -52.49 -0.42 1.27 16 45 H 0.06 0.95 6.46 -51.93 -0.34 0.62 16 46 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -30.54 365.08 -9.47 -40.01 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.51 Total: 4.57 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -1.70 Total: -22.55 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: -0.39 Total: -32.65 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.35 Total: -10.59 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.54 -9.47 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738318165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.727 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds