Wall clock time and date at job start Tue Mar 31 2020 09:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.47258 * 2 1 4 4 C 1.42893 * 114.00330 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50502 * 329.92108 * 4 3 2 6 6 C 1.53121 * 109.50341 * 90.00251 * 4 3 2 7 7 C 1.53121 * 109.15933 * 177.59905 * 6 4 3 8 8 C 1.53031 * 109.27605 * 302.34140 * 7 6 4 9 9 N 1.46848 * 109.52728 * 59.18034 * 8 7 6 10 10 C 1.46897 * 111.00517 * 174.15905 * 9 8 7 11 11 C 1.50708 * 109.46975 * 66.04549 * 10 9 8 12 12 C 1.38298 * 119.93184 * 269.73188 * 11 10 9 13 13 C 1.38094 * 120.06652 * 179.72611 * 12 11 10 14 14 C 1.38878 * 119.93315 * 0.54220 * 13 12 11 15 15 O 1.35756 * 120.07480 * 179.74776 * 14 13 12 16 16 C 1.34825 * 117.00046 * 174.44333 * 15 14 13 17 17 H 1.07993 * 120.00067 * 5.06085 * 16 15 14 18 18 C 1.38656 * 119.99809 * 185.05579 * 16 15 14 19 19 N 1.31559 * 120.00029 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00105 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46904 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47296 * 119.99897 * 20 18 16 23 23 H 1.48503 * 109.47481 * 240.00199 * 20 18 16 24 24 C 1.38880 * 119.85873 * 359.73200 * 14 13 12 25 25 C 1.38098 * 119.93054 * 359.97438 * 24 14 13 26 26 C 1.46850 * 111.19672 * 298.25947 * 9 8 7 27 27 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46965 * 299.99587 * 1 2 3 29 29 H 1.08993 * 109.47057 * 59.99697 * 1 2 3 30 30 H 1.09003 * 109.47504 * 120.00008 * 2 1 3 31 31 H 1.08993 * 109.47113 * 240.00124 * 2 1 3 32 32 H 1.09001 * 109.51855 * 297.49755 * 6 4 3 33 33 H 1.08998 * 109.52790 * 57.62469 * 6 4 3 34 34 H 1.08997 * 109.50713 * 62.28571 * 7 6 4 35 35 H 1.09003 * 109.49632 * 182.40318 * 7 6 4 36 36 H 1.08996 * 109.46307 * 179.20126 * 8 7 6 37 37 H 1.09006 * 109.46138 * 299.17439 * 8 7 6 38 38 H 1.08990 * 109.47536 * 186.05122 * 10 9 8 39 39 H 1.09009 * 109.47143 * 306.05114 * 10 9 8 40 40 H 1.08002 * 119.96612 * 359.97438 * 12 11 10 41 41 H 1.08004 * 120.03737 * 180.26917 * 13 12 11 42 42 H 0.96996 * 119.99809 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.03747 * 179.97438 * 24 14 13 44 44 H 1.08001 * 119.96379 * 180.02562 * 25 24 14 45 45 H 1.08997 * 109.46341 * 301.72377 * 26 9 8 46 46 H 1.08999 * 109.46012 * 181.75343 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8641 0.6025 0.5141 6 6 3.9399 1.5008 -1.4441 7 6 5.4603 1.6821 -1.4360 8 6 5.8122 2.9637 -0.6774 9 7 5.3045 2.8753 0.6977 10 6 5.7431 4.0277 1.4961 11 6 5.1056 5.2831 0.9585 12 6 5.7475 6.0178 -0.0217 13 6 5.1633 7.1654 -0.5203 14 6 3.9351 7.5877 -0.0283 15 8 3.3606 8.7183 -0.5128 16 6 2.1184 9.0090 -0.0764 17 1 1.6583 8.4002 0.6877 18 6 1.4320 10.0898 -0.6086 19 7 1.9924 10.8312 -1.5397 20 14 -0.2887 10.4931 -0.0036 21 1 -0.6885 9.5147 1.0395 22 1 -0.3031 11.8622 0.5711 23 1 -1.2421 10.4232 -1.1400 24 6 3.2957 6.8508 0.9601 25 6 3.8823 5.7007 1.4502 26 6 3.8416 2.7483 0.7164 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8935 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.6871 0.5668 -1.9459 33 1 3.4755 2.3345 -1.9709 34 1 5.9260 0.8283 -0.9438 35 1 5.8236 1.7546 -2.4612 36 1 6.8949 3.0883 -0.6575 37 1 5.3575 3.8186 -1.1780 38 1 5.4451 3.8849 2.5346 39 1 6.8280 4.1179 1.4385 40 1 6.7048 5.6914 -0.4005 41 1 5.6630 7.7364 -1.2889 42 1 1.5123 11.5874 -1.9118 43 1 2.3408 7.1768 1.3450 44 1 3.3854 5.1270 2.2186 45 1 3.3962 3.6041 0.2092 46 1 3.4931 2.7163 1.7487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738318165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:38 Heat of formation + Delta-G solvation = -74.167422 kcal Electronic energy + Delta-G solvation = -25369.337705 eV Core-core repulsion = 21837.427984 eV Total energy + Delta-G solvation = -3531.909720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19196 -40.27915 -38.85767 -37.55800 -34.63509 -34.06580 -32.51436 -31.84925 -30.87798 -30.12964 -27.73624 -26.71738 -24.20931 -24.09122 -23.42802 -23.16187 -22.05466 -20.62794 -19.87792 -18.84017 -17.90128 -16.89231 -16.62061 -16.52973 -16.34255 -16.24492 -15.83835 -15.58255 -15.29069 -15.06256 -14.79792 -14.61863 -14.46745 -14.28368 -14.02513 -13.63960 -13.54532 -13.14977 -13.01896 -12.92570 -12.62070 -12.48616 -12.47132 -12.40084 -12.13815 -12.12779 -11.94220 -11.66556 -11.61986 -11.44399 -11.21082 -10.82967 -10.38808 -9.80198 -9.36912 -8.93440 -8.51109 -6.19406 0.55281 0.63204 1.31739 1.39994 1.50102 2.14462 2.49169 2.79030 3.10799 3.34338 3.48623 3.79718 3.84353 4.00154 4.06685 4.07197 4.15488 4.16779 4.22750 4.31352 4.38617 4.49308 4.51893 4.54722 4.59993 4.67924 4.73569 4.83741 4.89910 4.94343 4.94998 5.00700 5.03152 5.06442 5.08424 5.12042 5.17500 5.25288 5.27150 5.39758 5.52578 5.67704 5.71486 5.99133 6.05919 6.11594 6.18888 6.39266 6.93714 7.74015 8.72357 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.003817 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.999572 B = 7334.771252 C = 8756.046239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.411 6.411 4 C 0.098 3.902 5 H 0.081 0.919 6 C -0.142 4.142 7 C -0.106 4.106 8 C 0.043 3.957 9 N -0.515 5.515 10 C 0.111 3.889 11 C -0.194 4.194 12 C -0.052 4.052 13 C -0.207 4.207 14 C 0.116 3.884 15 O -0.233 6.233 16 C -0.415 4.415 17 H 0.098 0.902 18 C -0.021 4.021 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.254 1.254 22 H -0.265 1.265 23 H -0.267 1.267 24 C -0.246 4.246 25 C -0.056 4.056 26 C 0.059 3.941 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.020 0.980 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.148 0.852 41 H 0.112 0.888 42 H 0.273 0.727 43 H 0.113 0.887 44 H 0.131 0.869 45 H 0.020 0.980 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -23.566 4.629 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.330 6.330 4 C 0.040 3.960 5 H 0.099 0.901 6 C -0.180 4.180 7 C -0.144 4.144 8 C -0.085 4.085 9 N -0.238 5.238 10 C -0.016 4.016 11 C -0.197 4.197 12 C -0.071 4.071 13 C -0.227 4.227 14 C 0.065 3.935 15 O -0.139 6.139 16 C -0.491 4.491 17 H 0.116 0.884 18 C -0.219 4.219 19 N -0.558 5.558 20 Si 0.837 3.163 21 H -0.177 1.177 22 H -0.190 1.190 23 H -0.192 1.192 24 C -0.265 4.265 25 C -0.075 4.075 26 C -0.070 4.070 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.166 0.834 41 H 0.130 0.870 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.149 0.851 45 H 0.038 0.962 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.604 -23.523 4.566 24.400 hybrid contribution -1.261 1.569 -0.522 2.080 sum 3.342 -21.954 4.044 22.572 Atomic orbital electron populations 1.21781 0.93391 1.03337 1.02348 1.22682 0.95968 0.82811 1.00914 1.87905 1.21636 1.28299 1.95196 1.22022 0.80329 0.98117 0.95519 0.90087 1.22080 0.97149 1.01922 0.96823 1.21512 0.94142 0.98010 1.00744 1.22281 1.00912 0.97117 0.88187 1.62395 1.09095 1.39463 1.12860 1.21134 1.00252 0.82946 0.97258 1.20489 0.96879 1.00754 1.01529 1.20906 0.99165 0.92018 0.94996 1.20478 0.95715 1.01032 1.05433 1.19938 0.93755 0.86725 0.93076 1.83935 1.30909 1.36054 1.63021 1.21832 0.89968 1.14651 1.22635 0.88431 1.26577 1.04441 0.94924 0.95947 1.70184 1.39977 1.18054 1.27561 0.84547 0.74259 0.78971 0.78537 1.17720 1.18992 1.19218 1.21232 1.02853 0.99848 1.02559 1.20934 0.94863 0.93768 0.97941 1.21975 0.88544 0.95947 1.00508 0.88807 0.92581 0.92953 0.92138 0.92575 0.90574 0.93974 0.89692 0.90100 0.88702 0.96199 0.89094 0.87977 0.83443 0.87030 0.91762 0.86910 0.85104 0.96195 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.05 0.94 6.47 71.98 0.47 1.40 16 3 O -0.41 -10.51 9.99 -148.98 -1.49 -12.00 16 4 C 0.10 2.22 2.77 30.65 0.08 2.30 16 5 H 0.08 1.56 7.79 -2.39 -0.02 1.54 16 6 C -0.14 -3.03 5.62 30.68 0.17 -2.86 16 7 C -0.11 -1.89 6.09 30.65 0.19 -1.71 16 8 C 0.04 0.91 4.84 86.32 0.42 1.33 16 9 N -0.51 -11.38 4.86 -900.92 -4.38 -15.75 16 10 C 0.11 2.47 5.55 85.56 0.48 2.95 16 11 C -0.19 -5.98 4.04 -19.83 -0.08 -6.06 16 12 C -0.05 -1.74 8.12 22.25 0.18 -1.56 16 13 C -0.21 -9.00 9.99 22.39 0.22 -8.78 16 14 C 0.12 5.94 6.65 22.58 0.15 6.09 16 15 O -0.23 -14.43 9.76 -22.75 -0.22 -14.65 16 16 C -0.41 -24.94 9.49 67.92 0.64 -24.30 16 17 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 18 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 19 N -0.92 -57.46 13.67 21.61 0.30 -57.16 16 20 Si 1.02 44.03 29.55 68.60 2.03 46.06 16 21 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 C -0.25 -11.18 9.17 22.39 0.21 -10.98 16 25 C -0.06 -2.01 8.00 22.25 0.18 -1.84 16 26 C 0.06 1.50 4.19 86.33 0.36 1.86 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 31 H 0.06 0.87 7.94 -2.39 -0.02 0.85 16 32 H 0.08 1.37 7.94 -2.39 -0.02 1.36 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.64 8.06 -2.39 -0.02 1.62 16 37 H 0.02 0.54 6.56 -2.38 -0.02 0.52 16 38 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 39 H 0.10 1.86 8.00 -2.38 -0.02 1.84 16 40 H 0.15 3.77 8.04 -2.91 -0.02 3.75 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.11 5.32 5.64 -2.91 -0.02 5.30 16 44 H 0.13 3.97 8.02 -2.91 -0.02 3.95 16 45 H 0.02 0.66 6.46 -2.39 -0.02 0.64 16 46 H 0.08 1.94 8.12 -2.39 -0.02 1.92 16 Total: -1.00 -72.78 365.08 2.06 -70.73 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.95 Total: 27.42 kcal Atomic # 6 Polarization: -49.51 SS G_CDS: 4.87 Total: -44.64 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -4.08 Total: -72.92 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.71 Total: -26.65 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.78 2.06 -70.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738318165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.442 kcal (2) G-P(sol) polarization free energy of solvation -72.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds