Wall clock time and date at job start Tue Mar 31 2020 09:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47121 * 2 1 4 4 C 1.42899 * 113.99693 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.50852 * 30.08138 * 4 3 2 6 6 C 1.53124 * 109.50458 * 269.99706 * 4 3 2 7 7 C 1.53119 * 109.16107 * 182.36804 * 6 4 3 8 8 C 1.53043 * 109.27756 * 57.65747 * 7 6 4 9 9 N 1.46842 * 109.52040 * 300.81818 * 8 7 6 10 10 C 1.46903 * 110.99846 * 185.84303 * 9 8 7 11 11 C 1.50701 * 109.47219 * 66.04480 * 10 9 8 12 12 C 1.38305 * 119.92910 * 270.25505 * 11 10 9 13 13 C 1.38104 * 120.06272 * 180.25358 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.47314 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31563 * 119.99570 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00407 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47217 * 90.00112 * 20 18 16 22 22 H 1.48504 * 109.47173 * 209.99833 * 20 18 16 23 23 H 1.48502 * 109.47283 * 329.99797 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 C 1.46849 * 111.20062 * 61.74610 * 9 8 7 27 27 H 1.09004 * 109.47159 * 59.99700 * 1 2 3 28 28 H 1.09001 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47279 * 300.00279 * 1 2 3 30 30 H 1.09002 * 109.47279 * 239.99721 * 2 1 3 31 31 H 1.08995 * 109.46836 * 119.99769 * 2 1 3 32 32 H 1.08996 * 109.51700 * 62.46311 * 6 4 3 33 33 H 1.09002 * 109.51905 * 302.27255 * 6 4 3 34 34 H 1.08995 * 109.50361 * 297.71418 * 7 6 4 35 35 H 1.09001 * 109.52961 * 177.61570 * 7 6 4 36 36 H 1.08998 * 109.45720 * 180.80183 * 8 7 6 37 37 H 1.09001 * 109.46366 * 60.83675 * 8 7 6 38 38 H 1.09006 * 109.47099 * 306.04649 * 10 9 8 39 39 H 1.08998 * 109.47276 * 186.04795 * 10 9 8 40 40 H 1.07990 * 119.96792 * 0.02562 * 12 11 10 41 41 H 1.08000 * 120.02708 * 179.74272 * 13 12 11 42 42 H 0.96992 * 119.99813 * 179.97438 * 19 18 16 43 43 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 44 44 H 1.08006 * 119.96524 * 179.97438 * 25 24 14 45 45 H 1.08997 * 109.45822 * 58.27162 * 26 9 8 46 46 H 1.09003 * 109.46282 * 178.23867 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8641 0.6024 -0.5141 6 6 3.9399 1.5007 1.4442 7 6 5.4604 1.6810 1.4360 8 6 5.8132 2.9623 0.6771 9 7 5.3054 2.8738 -0.6979 10 6 5.7449 4.0257 -1.4966 11 6 7.2420 3.9795 -1.6635 12 6 8.0592 4.5983 -0.7350 13 6 9.4313 4.5622 -0.8881 14 6 9.9905 3.8943 -1.9697 15 8 11.3390 3.8519 -2.1196 16 6 12.0746 4.5733 -1.2498 17 1 11.5931 5.0840 -0.4291 18 6 13.4492 4.6594 -1.4092 19 7 14.1670 5.3630 -0.5602 20 14 14.2821 3.7767 -2.8292 21 1 14.3386 4.6784 -4.0077 22 1 15.6609 3.3929 -2.4330 23 1 13.5090 2.5571 -3.1756 24 6 9.1673 3.2694 -2.8974 25 6 7.7958 3.3144 -2.7422 26 6 3.8425 2.7478 -0.7167 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 3.6864 0.5669 1.9461 33 1 3.4769 2.3355 1.9703 34 1 5.9255 0.8268 0.9440 35 1 5.8243 1.7532 2.4609 36 1 6.8959 3.0861 0.6572 37 1 5.3592 3.8176 1.1776 38 1 5.4643 4.9484 -0.9885 39 1 5.2688 3.9914 -2.4765 40 1 7.6239 5.1134 0.1084 41 1 10.0688 5.0491 -0.1650 42 1 15.1287 5.4230 -0.6715 43 1 9.5992 2.7489 -3.7394 44 1 7.1551 2.8290 -3.4635 45 1 3.3978 3.6041 -0.2097 46 1 3.4939 2.7158 -1.7490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738318167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:43 Heat of formation + Delta-G solvation = -52.392528 kcal Electronic energy + Delta-G solvation = -24670.430712 eV Core-core repulsion = 21139.465222 eV Total energy + Delta-G solvation = -3530.965490 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.79487 -39.06805 -37.66965 -36.42296 -33.43271 -32.36036 -31.78020 -30.36413 -29.99944 -29.09920 -26.16894 -24.92108 -23.26413 -23.07119 -22.41208 -22.00396 -20.30933 -19.90718 -17.87499 -17.29501 -17.03570 -16.02920 -15.81714 -15.35947 -15.07937 -14.63310 -14.40498 -14.13314 -13.94019 -13.80500 -13.69553 -13.65553 -13.24507 -12.97367 -12.71783 -12.55145 -12.36862 -12.23217 -12.08702 -11.85783 -11.61813 -11.31645 -11.17003 -11.00433 -10.89099 -10.83797 -10.67123 -10.63050 -10.49241 -10.14652 -9.64924 -9.38789 -8.87207 -8.32948 -8.21451 -7.31120 -6.42174 -4.08744 2.12681 2.17529 3.21051 3.24862 3.27163 3.40265 4.11546 4.23380 4.54363 4.61255 4.66057 4.76645 4.86739 4.88249 4.90858 5.04184 5.09130 5.10887 5.13312 5.29907 5.33204 5.41346 5.43717 5.55688 5.58079 5.59599 5.69196 5.72017 5.75983 5.78017 5.82055 5.83898 5.92238 6.08873 6.13260 6.20576 6.34784 6.57881 6.79103 6.91600 7.03314 7.07998 7.19389 7.26499 7.32948 7.61633 7.79714 8.03603 8.93202 9.55978 10.65471 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.002492 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.829240 B =11232.729798 C =11411.984929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.386 6.386 4 C 0.094 3.906 5 H 0.069 0.931 6 C -0.140 4.140 7 C -0.114 4.114 8 C 0.049 3.951 9 N -0.530 5.530 10 C 0.114 3.886 11 C -0.170 4.170 12 C -0.067 4.067 13 C -0.221 4.221 14 C 0.161 3.839 15 O -0.218 6.218 16 C -0.389 4.389 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.194 4.194 25 C -0.054 4.054 26 C 0.061 3.939 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.038 0.962 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.785 -8.198 1.419 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.305 6.305 4 C 0.036 3.964 5 H 0.087 0.913 6 C -0.178 4.178 7 C -0.152 4.152 8 C -0.079 4.079 9 N -0.256 5.256 10 C -0.012 4.012 11 C -0.171 4.171 12 C -0.086 4.086 13 C -0.240 4.240 14 C 0.109 3.891 15 O -0.123 6.123 16 C -0.465 4.465 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.518 5.518 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.213 4.213 25 C -0.073 4.073 26 C -0.067 4.067 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.056 0.944 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.353 -8.500 1.118 23.941 hybrid contribution 0.354 0.271 0.065 0.451 sum -21.999 -8.228 1.183 23.517 Atomic orbital electron populations 1.21745 0.93881 1.02140 1.03061 1.22477 0.95376 0.83931 1.00061 1.87858 1.21170 1.26387 1.95107 1.22032 0.80251 0.98664 0.95412 0.91274 1.22085 0.96532 1.02171 0.97027 1.21540 0.94708 0.98782 1.00206 1.22217 1.01775 0.96271 0.87603 1.61868 1.08519 1.42753 1.12445 1.20788 0.92900 0.90311 0.97236 1.19119 0.93421 1.06068 0.98513 1.20650 0.93006 0.97714 0.97228 1.21234 0.95057 1.06704 1.01051 1.19142 0.83780 0.93194 0.92976 1.83576 1.13109 1.62393 1.53207 1.20761 0.89753 1.28309 1.07630 0.87653 1.24473 0.95184 0.96293 0.98111 1.69648 1.07334 1.38754 1.36036 0.86177 0.78299 0.80894 0.81509 1.19898 1.20806 1.18357 1.20211 0.92615 1.07499 1.00985 1.20449 0.93407 0.96761 0.96678 1.21970 0.88211 0.95938 1.00613 0.91874 0.91202 0.91948 0.93339 0.93515 0.91980 0.91539 0.90935 0.91161 0.89176 0.95141 0.94703 0.90624 0.87642 0.85044 0.91068 0.86598 0.86902 0.94358 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.47 6.47 37.16 0.24 0.71 16 3 O -0.39 -4.14 9.99 -35.23 -0.35 -4.49 16 4 C 0.09 0.99 2.77 -26.65 -0.07 0.92 16 5 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 6 C -0.14 -1.40 5.62 -26.61 -0.15 -1.55 16 7 C -0.11 -1.23 6.09 -26.65 -0.16 -1.39 16 8 C 0.05 0.61 5.15 -3.83 -0.02 0.59 16 9 N -0.53 -6.68 4.65 -236.10 -1.10 -7.78 16 10 C 0.11 1.50 5.12 -4.97 -0.03 1.47 16 11 C -0.17 -2.74 4.91 -104.57 -0.51 -3.25 16 12 C -0.07 -1.18 7.86 -39.61 -0.31 -1.49 16 13 C -0.22 -4.69 9.17 -39.40 -0.36 -5.05 16 14 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 15 O -0.22 -5.73 8.59 0.04 0.00 -5.73 16 16 C -0.39 -10.91 9.95 30.89 0.31 -10.61 16 17 H 0.11 3.01 5.44 -52.49 -0.29 2.73 16 18 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 19 N -0.88 -25.34 13.96 55.48 0.77 -24.57 16 20 Si 0.91 21.66 28.62 -169.99 -4.86 16.79 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.19 -3.81 9.99 -39.40 -0.39 -4.20 16 25 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 26 C 0.06 0.68 5.11 -3.83 -0.02 0.66 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.05 0.35 7.93 -51.93 -0.41 -0.06 16 32 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.28 5.73 -51.93 -0.30 0.98 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.03 0.44 8.07 -51.93 -0.42 0.02 16 39 H 0.08 0.91 7.92 -51.93 -0.41 0.49 16 40 H 0.11 1.62 7.92 -52.49 -0.42 1.21 16 41 H 0.13 2.94 5.64 -52.49 -0.30 2.65 16 42 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.12 2.14 8.06 -52.48 -0.42 1.71 16 44 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -29.14 367.49 -9.39 -38.53 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.55 Total: 1.71 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -1.84 Total: -20.01 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: -0.32 Total: -32.35 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.35 Total: -10.22 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.14 -9.39 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738318167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.859 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds