Wall clock time and date at job start Tue Mar 31 2020 09:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47121 * 2 1 4 4 C 1.42899 * 113.99693 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.50852 * 30.08138 * 4 3 2 6 6 C 1.53124 * 109.50458 * 269.99706 * 4 3 2 7 7 C 1.53119 * 109.16107 * 182.36804 * 6 4 3 8 8 C 1.53043 * 109.27756 * 57.65747 * 7 6 4 9 9 N 1.46842 * 109.52040 * 300.81818 * 8 7 6 10 10 C 1.46903 * 110.99846 * 185.84303 * 9 8 7 11 11 C 1.50701 * 109.47219 * 66.04480 * 10 9 8 12 12 C 1.38305 * 119.92910 * 270.25505 * 11 10 9 13 13 C 1.38104 * 120.06272 * 180.25358 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.47314 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31563 * 119.99570 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00407 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47217 * 90.00112 * 20 18 16 22 22 H 1.48504 * 109.47173 * 209.99833 * 20 18 16 23 23 H 1.48502 * 109.47283 * 329.99797 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 C 1.46849 * 111.20062 * 61.74610 * 9 8 7 27 27 H 1.09004 * 109.47159 * 59.99700 * 1 2 3 28 28 H 1.09001 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47279 * 300.00279 * 1 2 3 30 30 H 1.09002 * 109.47279 * 239.99721 * 2 1 3 31 31 H 1.08995 * 109.46836 * 119.99769 * 2 1 3 32 32 H 1.08996 * 109.51700 * 62.46311 * 6 4 3 33 33 H 1.09002 * 109.51905 * 302.27255 * 6 4 3 34 34 H 1.08995 * 109.50361 * 297.71418 * 7 6 4 35 35 H 1.09001 * 109.52961 * 177.61570 * 7 6 4 36 36 H 1.08998 * 109.45720 * 180.80183 * 8 7 6 37 37 H 1.09001 * 109.46366 * 60.83675 * 8 7 6 38 38 H 1.09006 * 109.47099 * 306.04649 * 10 9 8 39 39 H 1.08998 * 109.47276 * 186.04795 * 10 9 8 40 40 H 1.07990 * 119.96792 * 0.02562 * 12 11 10 41 41 H 1.08000 * 120.02708 * 179.74272 * 13 12 11 42 42 H 0.96992 * 119.99813 * 179.97438 * 19 18 16 43 43 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 44 44 H 1.08006 * 119.96524 * 179.97438 * 25 24 14 45 45 H 1.08997 * 109.45822 * 58.27162 * 26 9 8 46 46 H 1.09003 * 109.46282 * 178.23867 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8641 0.6024 -0.5141 6 6 3.9399 1.5007 1.4442 7 6 5.4604 1.6810 1.4360 8 6 5.8132 2.9623 0.6771 9 7 5.3054 2.8738 -0.6979 10 6 5.7449 4.0257 -1.4966 11 6 7.2420 3.9795 -1.6635 12 6 8.0592 4.5983 -0.7350 13 6 9.4313 4.5622 -0.8881 14 6 9.9905 3.8943 -1.9697 15 8 11.3390 3.8519 -2.1196 16 6 12.0746 4.5733 -1.2498 17 1 11.5931 5.0840 -0.4291 18 6 13.4492 4.6594 -1.4092 19 7 14.1670 5.3630 -0.5602 20 14 14.2821 3.7767 -2.8292 21 1 14.3386 4.6784 -4.0077 22 1 15.6609 3.3929 -2.4330 23 1 13.5090 2.5571 -3.1756 24 6 9.1673 3.2694 -2.8974 25 6 7.7958 3.3144 -2.7422 26 6 3.8425 2.7478 -0.7167 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 3.6864 0.5669 1.9461 33 1 3.4769 2.3355 1.9703 34 1 5.9255 0.8268 0.9440 35 1 5.8243 1.7532 2.4609 36 1 6.8959 3.0861 0.6572 37 1 5.3592 3.8176 1.1776 38 1 5.4643 4.9484 -0.9885 39 1 5.2688 3.9914 -2.4765 40 1 7.6239 5.1134 0.1084 41 1 10.0688 5.0491 -0.1650 42 1 15.1287 5.4230 -0.6715 43 1 9.5992 2.7489 -3.7394 44 1 7.1551 2.8290 -3.4635 45 1 3.3978 3.6041 -0.2097 46 1 3.4939 2.7158 -1.7490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738318167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:43 Heat of formation + Delta-G solvation = -69.483473 kcal Electronic energy + Delta-G solvation = -24671.171831 eV Core-core repulsion = 21139.465222 eV Total energy + Delta-G solvation = -3531.706609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05323 -40.36302 -38.84664 -37.72961 -34.63432 -34.21092 -32.47185 -31.83662 -31.30912 -30.04503 -27.74458 -26.46864 -24.10637 -24.00848 -23.51620 -23.30461 -21.76243 -20.80525 -19.78300 -19.06965 -17.87693 -16.91146 -16.71815 -16.57568 -16.43565 -16.06753 -15.64626 -15.58588 -15.40234 -15.08002 -14.88588 -14.59827 -14.35952 -14.25604 -14.17285 -13.98431 -13.68529 -13.14115 -13.01946 -12.89614 -12.76662 -12.55992 -12.44113 -12.38531 -12.13691 -12.00200 -11.92597 -11.70398 -11.59779 -11.43666 -11.25604 -10.89543 -10.39760 -9.76750 -9.32577 -8.95058 -8.49590 -6.21924 0.58688 0.63381 1.31625 1.35632 1.52290 2.28409 2.42473 2.79237 3.05381 3.15660 3.37329 3.78047 3.82717 3.99241 4.02157 4.04978 4.17221 4.19577 4.25141 4.32671 4.40752 4.45609 4.51236 4.55076 4.59845 4.62271 4.70290 4.74116 4.84694 4.90118 4.92989 4.98106 5.01235 5.03611 5.06140 5.17376 5.27112 5.29525 5.36065 5.38570 5.59381 5.77008 5.81516 5.91765 6.08429 6.09465 6.26862 6.36211 6.84896 7.59989 8.62002 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.002492 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.829240 B =11232.729798 C =11411.984929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.401 6.401 4 C 0.097 3.903 5 H 0.068 0.932 6 C -0.134 4.134 7 C -0.111 4.111 8 C 0.048 3.952 9 N -0.536 5.536 10 C 0.115 3.885 11 C -0.144 4.144 12 C -0.065 4.065 13 C -0.237 4.237 14 C 0.120 3.880 15 O -0.246 6.246 16 C -0.398 4.398 17 H 0.080 0.920 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.263 1.263 24 C -0.193 4.193 25 C -0.048 4.048 26 C 0.064 3.936 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.106 0.894 42 H 0.284 0.716 43 H 0.128 0.872 44 H 0.152 0.848 45 H 0.037 0.963 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.834 -9.643 0.213 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.320 6.320 4 C 0.039 3.961 5 H 0.086 0.914 6 C -0.172 4.172 7 C -0.149 4.149 8 C -0.080 4.080 9 N -0.261 5.261 10 C -0.012 4.012 11 C -0.145 4.145 12 C -0.083 4.083 13 C -0.256 4.256 14 C 0.071 3.929 15 O -0.154 6.154 16 C -0.474 4.474 17 H 0.098 0.902 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.187 1.187 24 C -0.212 4.212 25 C -0.066 4.066 26 C -0.064 4.064 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.116 0.884 40 H 0.145 0.855 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.146 0.854 44 H 0.169 0.831 45 H 0.055 0.945 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.457 -9.952 -0.085 27.333 hybrid contribution 0.893 0.693 0.490 1.232 sum -24.564 -9.259 0.405 26.254 Atomic orbital electron populations 1.21759 0.92842 1.03291 1.02692 1.22677 0.96269 0.82924 1.00658 1.87842 1.21004 1.27977 1.95189 1.21970 0.80472 0.98228 0.95472 0.91374 1.22027 0.95642 1.02617 0.96951 1.21503 0.95376 0.97609 1.00381 1.22205 1.00432 0.97392 0.87988 1.61812 1.09704 1.42238 1.12380 1.20827 0.90300 0.91165 0.98882 1.19570 0.95355 1.02795 0.96756 1.20874 0.91483 0.97655 0.98303 1.21222 0.96570 1.07212 1.00590 1.19684 0.83106 0.95286 0.94796 1.83518 1.14652 1.63745 1.53453 1.20694 0.90426 1.28655 1.07630 0.90211 1.25294 0.95684 0.97255 1.00776 1.69733 1.07843 1.40834 1.38034 0.85206 0.77569 0.79465 0.78400 1.19071 1.19238 1.18741 1.20523 0.93591 1.06610 1.00442 1.20893 0.92492 0.95914 0.97289 1.21968 0.86898 0.96273 1.01263 0.92216 0.89332 0.92316 0.92770 0.92878 0.90931 0.91805 0.91608 0.90317 0.91306 0.94643 0.93737 0.88352 0.85462 0.87618 0.90616 0.85448 0.83052 0.94484 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.05 0.70 6.47 71.98 0.47 1.17 16 3 O -0.40 -7.58 9.99 -148.98 -1.49 -9.06 16 4 C 0.10 1.77 2.77 30.65 0.08 1.86 16 5 H 0.07 1.26 7.79 -2.39 -0.02 1.24 16 6 C -0.13 -2.35 5.62 30.68 0.17 -2.18 16 7 C -0.11 -2.15 6.09 30.65 0.19 -1.96 16 8 C 0.05 1.07 5.15 86.33 0.44 1.52 16 9 N -0.54 -11.76 4.65 -900.90 -4.19 -15.95 16 10 C 0.11 2.56 5.12 85.56 0.44 3.00 16 11 C -0.14 -4.23 4.91 -19.83 -0.10 -4.33 16 12 C -0.06 -2.21 7.86 22.25 0.18 -2.04 16 13 C -0.24 -10.41 9.17 22.39 0.21 -10.20 16 14 C 0.12 5.65 6.65 22.58 0.15 5.80 16 15 O -0.25 -13.48 8.59 -22.77 -0.20 -13.67 16 16 C -0.40 -23.62 9.95 67.92 0.68 -22.94 16 17 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 18 C 0.01 0.47 5.49 84.83 0.47 0.94 16 19 N -0.92 -55.51 13.96 21.61 0.30 -55.21 16 20 Si 0.97 45.78 28.62 68.60 1.96 47.74 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 24 C -0.19 -7.34 9.99 22.39 0.22 -7.11 16 25 C -0.05 -1.45 9.69 22.25 0.22 -1.23 16 26 C 0.06 1.22 5.11 86.33 0.44 1.66 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.68 8.09 -2.39 -0.02 0.66 16 31 H 0.05 0.66 7.93 -2.39 -0.02 0.64 16 32 H 0.07 1.12 7.93 -2.39 -0.02 1.10 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.85 5.73 -2.39 -0.01 1.84 16 37 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.04 0.95 8.07 -2.38 -0.02 0.93 16 39 H 0.10 1.84 7.92 -2.39 -0.02 1.82 16 40 H 0.13 3.76 7.92 -2.92 -0.02 3.74 16 41 H 0.11 5.15 5.64 -2.91 -0.02 5.13 16 42 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 45 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.09 1.53 8.01 -2.39 -0.02 1.51 16 Total: -1.00 -65.79 367.49 2.33 -63.46 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.95 Total: 19.61 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 4.99 Total: -36.92 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -3.88 Total: -71.15 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -1.68 Total: -22.74 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.96 Total: 47.74 kcal Total: -65.79 2.33 -63.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738318167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.023 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds