Wall clock time and date at job start Tue Mar 31 2020 08:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47246 * 2 1 4 4 C 1.46899 * 110.99569 * 288.50493 * 3 2 1 5 5 C 1.46901 * 110.99574 * 164.55421 * 3 2 1 6 6 H 1.08994 * 109.47430 * 60.66020 * 5 3 2 7 7 C 1.50699 * 109.47561 * 300.65021 * 5 3 2 8 8 O 1.20832 * 119.99441 * 332.72667 * 7 5 3 9 9 O 1.34225 * 120.00153 * 152.72100 * 7 5 3 10 10 C 1.45204 * 116.99810 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.46903 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47211 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47429 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99926 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00463 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99874 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00332 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47219 * 60.00323 * 17 15 13 19 19 H 1.48504 * 109.47338 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47171 * 300.00227 * 17 15 13 21 21 C 1.50707 * 109.46496 * 180.65363 * 5 3 2 22 22 C 1.38241 * 119.99745 * 227.26001 * 21 5 3 23 23 C 1.38234 * 119.99703 * 180.02562 * 22 21 5 24 24 C 1.38230 * 120.00152 * 359.95704 * 23 22 21 25 25 C 1.38233 * 120.00158 * 359.97438 * 24 23 22 26 26 C 1.38231 * 120.00193 * 47.23721 * 21 5 3 27 27 H 1.08995 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47400 * 300.00914 * 1 2 3 29 29 H 1.09000 * 109.46890 * 60.00232 * 1 2 3 30 30 H 1.08994 * 109.47285 * 239.99348 * 2 1 3 31 31 H 1.09000 * 109.46890 * 119.99768 * 2 1 3 32 32 H 1.09001 * 109.47222 * 296.04615 * 4 3 2 33 33 H 1.08996 * 109.47458 * 56.04988 * 4 3 2 34 34 H 1.09004 * 109.46619 * 176.04995 * 4 3 2 35 35 H 1.09004 * 109.46848 * 299.99742 * 10 9 7 36 36 H 1.08991 * 109.47084 * 60.00038 * 10 9 7 37 37 H 1.09002 * 109.47488 * 299.99993 * 11 10 9 38 38 H 1.09002 * 109.46997 * 59.99651 * 11 10 9 39 39 H 1.08993 * 109.47459 * 300.00440 * 12 11 10 40 40 H 1.09002 * 109.47002 * 60.00172 * 12 11 10 41 41 H 0.97004 * 119.99992 * 179.97438 * 16 15 13 42 42 H 1.07995 * 120.00158 * 359.97438 * 22 21 5 43 43 H 1.08001 * 119.99622 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.99904 * 179.71762 * 24 23 22 45 45 H 1.08004 * 120.00013 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.00118 * 0.02562 * 26 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7848 2.0264 -1.3006 5 6 3.4415 1.4406 0.3653 6 1 4.0254 0.8736 -0.3598 7 6 3.6313 0.8472 1.7374 8 8 2.7266 0.8748 2.5379 9 8 4.8052 0.2879 2.0703 10 6 4.9163 -0.2643 3.4086 11 6 6.3148 -0.8538 3.6025 12 6 6.4322 -1.4351 5.0129 13 6 7.8094 -2.0164 5.2037 14 1 8.5292 -1.9749 4.3996 15 6 8.1506 -2.6011 6.4048 16 7 7.2740 -2.6520 7.3838 17 14 9.8580 -3.3209 6.6415 18 1 10.8746 -2.2537 6.4605 19 1 9.9719 -3.8852 8.0104 20 1 10.0851 -4.3955 5.6421 21 6 3.9031 2.8752 0.3702 22 6 5.0815 3.2243 -0.2627 23 6 5.5051 4.5401 -0.2577 24 6 4.7500 5.5070 0.3793 25 6 3.5709 5.1581 1.0109 26 6 3.1479 3.8421 1.0070 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3633 1.5130 -2.0686 33 1 0.7244 1.9711 -1.5467 34 1 2.0924 3.0709 -1.2513 35 1 4.7493 0.5246 4.1421 36 1 4.1705 -1.0478 3.5414 37 1 6.4815 -1.6427 2.8690 38 1 7.0610 -0.0705 3.4695 39 1 6.2657 -0.6461 5.7461 40 1 5.6860 -2.2184 5.1463 41 1 7.5140 -3.0637 8.2288 42 1 5.6715 2.4689 -0.7602 43 1 6.4260 4.8128 -0.7518 44 1 5.0833 6.5342 0.3870 45 1 2.9811 5.9135 1.5089 46 1 2.2272 3.5694 1.5015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745099190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:55 Heat of formation + Delta-G solvation = -82.123695 kcal Electronic energy + Delta-G solvation = -24912.713083 eV Core-core repulsion = 21380.458353 eV Total energy + Delta-G solvation = -3532.254730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -41.98977 -40.23227 -38.60943 -37.49722 -35.96243 -33.89589 -33.49582 -31.82879 -30.86036 -29.63021 -28.59738 -26.06571 -25.17346 -23.57351 -23.19136 -22.44404 -22.20613 -21.07102 -18.95516 -18.52645 -18.15514 -17.74521 -17.35778 -16.80864 -16.48803 -16.36604 -15.83429 -15.45784 -15.41271 -15.05878 -14.54531 -14.30514 -14.13144 -14.06379 -13.97959 -13.79655 -13.63640 -13.36482 -13.05727 -12.81070 -12.77872 -12.59778 -12.54225 -12.43080 -12.13309 -12.03665 -11.97663 -11.80499 -11.73795 -11.44896 -11.41712 -11.24906 -10.57983 -9.83433 -9.74297 -9.48015 -8.22626 -6.34704 0.25175 0.49294 1.08733 1.40345 1.44416 1.46621 1.52912 2.40623 2.65154 2.97851 3.11083 3.48380 3.64539 3.80053 3.94624 3.96873 4.01505 4.13457 4.17086 4.25656 4.31077 4.35514 4.48398 4.52626 4.59641 4.60865 4.69258 4.75454 4.81375 4.87151 4.94134 5.00216 5.04290 5.06731 5.15646 5.30437 5.35687 5.47760 5.52656 5.55773 5.60687 5.61156 5.78034 5.80830 5.95223 6.07157 6.17322 6.65684 6.80855 7.34914 8.89489 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.003005 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.342850 B = 9315.620393 C =10508.639387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.029 3.971 5 C 0.145 3.855 6 H 0.094 0.906 7 C 0.462 3.538 8 O -0.515 6.515 9 O -0.358 6.358 10 C 0.080 3.920 11 C -0.092 4.092 12 C 0.027 3.973 13 C -0.545 4.545 14 H 0.066 0.934 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.970 3.030 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.265 1.265 21 C -0.102 4.102 22 C -0.107 4.107 23 C -0.125 4.125 24 C -0.112 4.112 25 C -0.132 4.132 26 C -0.098 4.098 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.066 0.934 39 H -0.005 1.005 40 H -0.003 1.003 41 H 0.265 0.735 42 H 0.138 0.862 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.138 0.862 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 14.311 -22.130 28.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 N -0.258 5.258 4 C -0.118 4.118 5 C 0.036 3.964 6 H 0.112 0.888 7 C 0.304 3.696 8 O -0.403 6.403 9 O -0.274 6.274 10 C 0.006 3.994 11 C -0.130 4.130 12 C -0.010 4.010 13 C -0.583 4.583 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.189 1.189 21 C -0.103 4.103 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.130 4.130 25 C -0.150 4.150 26 C -0.117 4.117 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.074 0.926 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.156 0.844 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.037 14.484 -21.328 27.667 hybrid contribution 0.859 -1.112 0.500 1.491 sum -9.178 13.373 -20.829 26.399 Atomic orbital electron populations 1.21669 0.92913 1.02274 1.02478 1.22223 0.98084 0.87768 1.00406 1.61768 1.12933 1.18675 1.32468 1.22487 1.02975 0.99613 0.86723 1.20027 0.92063 0.94454 0.89844 0.88840 1.23965 0.79877 0.74751 0.91019 1.90643 1.42858 1.54437 1.52338 1.86479 1.36900 1.68364 1.35700 1.23127 0.99546 0.97193 0.79496 1.21452 0.92964 0.99943 0.98612 1.18922 0.96295 0.94646 0.91175 1.21588 0.99232 1.38049 0.99417 0.91602 1.26025 1.01898 0.96381 0.95590 1.70099 1.36939 1.45532 1.04810 0.85430 0.78948 0.78936 0.77323 1.19000 1.20897 1.18948 1.19271 0.97014 0.91975 1.02014 1.21297 0.94773 0.97806 0.98689 1.21450 1.00701 0.92353 0.99778 1.21575 0.94276 1.00855 0.96288 1.21427 0.97627 0.95913 1.00049 1.21109 0.99493 0.93319 0.97754 0.91260 0.93309 0.90914 0.92841 0.93494 0.94115 0.89254 0.90914 0.92315 0.91925 0.91326 0.91548 0.98625 0.98491 0.92642 0.84375 0.83338 0.83455 0.84367 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.95 71.98 0.72 -1.71 16 2 C 0.04 0.91 5.37 86.30 0.46 1.37 16 3 N -0.53 -11.62 3.86 -905.91 -3.50 -15.12 16 4 C 0.03 0.44 9.02 127.69 1.15 1.59 16 5 C 0.15 3.52 2.18 43.42 0.09 3.62 16 6 H 0.09 1.95 7.93 -2.39 -0.02 1.93 16 7 C 0.46 15.06 5.79 71.24 0.41 15.47 16 8 O -0.52 -19.66 15.41 21.95 0.34 -19.32 16 9 O -0.36 -12.55 10.22 -51.37 -0.53 -13.08 16 10 C 0.08 3.12 5.47 71.98 0.39 3.52 16 11 C -0.09 -3.93 5.53 30.59 0.17 -3.76 16 12 C 0.03 1.44 4.97 29.85 0.15 1.59 16 13 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 14 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 15 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 16 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 17 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 C -0.10 -2.31 3.54 -19.86 -0.07 -2.38 16 22 C -0.11 -2.03 9.67 22.27 0.22 -1.81 16 23 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 24 C -0.11 -1.76 10.05 22.27 0.22 -1.54 16 25 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 26 C -0.10 -2.26 8.52 22.27 0.19 -2.07 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.01 6.67 -2.39 -0.02 0.99 16 30 H 0.05 0.95 8.06 -2.39 -0.02 0.93 16 31 H 0.05 1.28 6.08 -2.39 -0.01 1.27 16 32 H 0.04 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.09 1.13 6.54 -2.39 -0.02 1.12 16 34 H 0.07 1.16 6.49 -2.38 -0.02 1.15 16 35 H 0.06 2.37 8.13 -2.38 -0.02 2.35 16 36 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 37 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.14 2.16 7.99 -2.91 -0.02 2.13 16 43 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 45 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.12 3.01 7.94 -2.91 -0.02 2.98 16 Total: -1.00 -69.37 379.56 4.81 -64.56 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.94 Total: 14.45 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 5.25 Total: -20.63 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -3.22 Total: -72.16 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.19 Total: -32.40 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -69.37 4.81 -64.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745099190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.568 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds