Wall clock time and date at job start Tue Mar 31 2020 09:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42911 * 109.46983 * 2 1 4 4 C 1.35903 * 116.99925 * 180.02562 * 3 2 1 5 5 C 1.38853 * 119.99024 * 0.02562 * 4 3 2 6 6 C 1.38237 * 120.24276 * 179.97438 * 5 4 3 7 7 C 1.38011 * 120.20722 * 359.73825 * 6 5 4 8 8 C 1.39561 * 119.96258 * 0.51631 * 7 6 5 9 9 C 1.47855 * 120.11683 * 179.76116 * 8 7 6 10 10 O 1.21555 * 120.00066 * 202.99197 * 9 8 7 11 11 N 1.34774 * 120.00249 * 23.00216 * 9 8 7 12 12 C 1.46498 * 119.99548 * 1.47027 * 11 9 8 13 13 C 1.50696 * 109.47191 * 259.58339 * 12 11 9 14 14 H 1.07996 * 120.00387 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00037 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99765 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00289 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47084 * 90.00217 * 17 15 13 19 19 H 1.48498 * 109.47287 * 209.99874 * 17 15 13 20 20 H 1.48504 * 109.46945 * 330.00235 * 17 15 13 21 21 C 1.46501 * 120.00193 * 181.47825 * 11 9 8 22 22 C 1.53004 * 109.46811 * 264.18496 * 21 11 9 23 23 C 1.52996 * 109.47137 * 65.83037 * 22 21 11 24 24 C 1.52999 * 109.47028 * 185.83027 * 22 21 11 25 25 C 1.38449 * 119.98257 * 179.97438 * 4 3 2 26 26 H 1.09000 * 109.46828 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47064 * 299.99752 * 1 2 3 28 28 H 1.09000 * 109.47047 * 60.00308 * 1 2 3 29 29 H 1.08992 * 109.47402 * 240.00089 * 2 1 3 30 30 H 1.09002 * 109.47567 * 119.99700 * 2 1 3 31 31 H 1.08001 * 119.87448 * 359.95824 * 5 4 3 32 32 H 1.08006 * 119.89564 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.02008 * 180.25790 * 7 6 5 34 34 H 1.08994 * 109.47316 * 19.58987 * 12 11 9 35 35 H 1.09008 * 109.47006 * 139.58679 * 12 11 9 36 36 H 0.97004 * 120.00071 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.46927 * 144.18591 * 21 11 9 38 38 H 1.09001 * 109.47166 * 24.18536 * 21 11 9 39 39 H 1.08996 * 109.47041 * 305.82879 * 22 21 11 40 40 H 1.09007 * 109.47010 * 62.52562 * 23 22 21 41 41 H 1.08999 * 109.47553 * 182.52640 * 23 22 21 42 42 H 1.08997 * 109.47331 * 302.53156 * 23 22 21 43 43 H 1.09004 * 109.47359 * 59.99859 * 24 22 21 44 44 H 1.08993 * 109.47173 * 180.02562 * 24 22 21 45 45 H 1.09007 * 109.47135 * 300.00285 * 24 22 21 46 46 H 1.08002 * 120.10849 * 0.04186 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 4.1993 0.4242 -0.0016 6 6 5.5705 0.5993 -0.0027 7 6 6.1082 1.8703 -0.0082 8 6 5.2663 2.9833 -0.0018 9 6 5.8387 4.3466 -0.0023 10 8 5.1827 5.2814 0.4140 11 7 7.0878 4.5528 -0.4645 12 6 7.8664 3.4316 -0.9963 13 6 8.8426 2.9573 0.0492 14 1 8.8792 3.4423 1.0134 15 6 9.6892 1.9042 -0.2253 16 7 9.6451 1.3140 -1.3998 17 14 10.8989 1.3158 1.0708 18 1 10.2613 0.2627 1.9012 19 1 12.1048 0.7597 0.4063 20 1 11.2922 2.4574 1.9354 21 6 7.6669 5.8982 -0.4351 22 6 7.4645 6.5704 -1.7945 23 6 5.9706 6.7975 -2.0338 24 6 8.1941 7.9151 -1.8122 25 6 3.8824 2.8050 -0.0011 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7841 -0.5729 -0.0013 32 1 6.2231 -0.2613 -0.0039 33 1 7.1799 2.0036 -0.0132 34 1 7.1940 2.6160 -1.2622 35 1 8.4121 3.7561 -1.8824 36 1 10.2404 0.5729 -1.5928 37 1 8.7331 5.8301 -0.2185 38 1 7.1759 6.4883 0.3388 39 1 7.8650 5.9295 -2.5800 40 1 5.5797 7.4745 -1.2741 41 1 5.8230 7.2353 -3.0210 42 1 5.4444 5.8446 -1.9765 43 1 9.2585 7.7534 -1.6417 44 1 8.0495 8.3942 -2.7805 45 1 7.7936 8.5561 -1.0267 46 1 3.2258 3.6626 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751379573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:33 Heat of formation + Delta-G solvation = -38.482182 kcal Electronic energy + Delta-G solvation = -25783.154128 eV Core-core repulsion = 22252.791836 eV Total energy + Delta-G solvation = -3530.362292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.13525 -39.12400 -36.86931 -35.88047 -34.36173 -32.44185 -31.88953 -30.58599 -29.26119 -27.53300 -26.74518 -25.92321 -24.02132 -23.09943 -22.06595 -21.64466 -19.86797 -18.96562 -17.57569 -16.65338 -16.24866 -16.00005 -15.66467 -15.48619 -14.99730 -14.63427 -14.37334 -14.05241 -13.60676 -13.35375 -13.14408 -13.05116 -12.85234 -12.65066 -12.44959 -12.21956 -12.13238 -11.86148 -11.75206 -11.61699 -11.36003 -11.12616 -10.99359 -10.79814 -10.65164 -10.61056 -10.48108 -10.33615 -10.10269 -9.83454 -9.60196 -9.02752 -8.72023 -8.50335 -7.69827 -7.63882 -6.33191 -4.42804 1.43030 1.97859 3.15540 3.23638 3.27015 3.30830 3.54564 3.97831 4.21899 4.44779 4.86237 4.91777 4.96812 5.13162 5.20215 5.29106 5.31168 5.36448 5.44370 5.48412 5.57496 5.69235 5.82648 5.92759 5.95735 6.00864 6.04820 6.08330 6.17609 6.22530 6.32413 6.41666 6.42421 6.46582 6.66666 6.69253 6.75561 6.82655 7.04269 7.08068 7.17815 7.37491 7.52204 7.62529 7.76658 7.88870 8.32583 8.67820 9.00231 9.25327 10.70592 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010229 B = 0.005369 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.745285 B = 5213.901218 C = 7485.421128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.096 3.904 5 C -0.190 4.190 6 C -0.098 4.098 7 C -0.135 4.135 8 C -0.100 4.100 9 C 0.557 3.443 10 O -0.566 6.566 11 N -0.584 5.584 12 C 0.205 3.795 13 C -0.545 4.545 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.879 5.879 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.124 3.876 22 C -0.112 4.112 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.100 4.100 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.215 0.785 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.269 0.731 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.002 -0.719 -0.375 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.235 6.235 4 C 0.052 3.948 5 C -0.209 4.209 6 C -0.116 4.116 7 C -0.152 4.152 8 C -0.103 4.103 9 C 0.346 3.654 10 O -0.448 6.448 11 N -0.313 5.313 12 C 0.086 3.914 13 C -0.583 4.583 14 H 0.085 0.915 15 C -0.136 4.136 16 N -0.515 5.515 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.001 3.999 22 C -0.132 4.132 23 C -0.193 4.193 24 C -0.199 4.199 25 C -0.120 4.120 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.231 0.769 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.374 -0.238 -0.295 9.382 hybrid contribution 0.824 -0.874 0.539 1.317 sum -8.550 -1.112 0.244 8.626 Atomic orbital electron populations 1.21762 0.93130 1.02495 1.03410 1.22689 0.95489 0.82641 1.01194 1.86032 1.19347 1.28533 1.89583 1.18652 0.81893 0.93877 1.00401 1.21377 0.94875 0.97358 1.07245 1.21025 0.93528 0.98109 0.98980 1.23906 1.06734 0.90732 0.93808 1.19765 0.92672 0.94102 1.03778 1.18184 0.81663 0.87746 0.77811 1.90667 1.60786 1.43802 1.49509 1.48012 1.13768 1.09878 1.59629 1.20359 0.91572 0.84750 0.94712 1.21439 1.19251 1.16759 1.00802 0.91513 1.25004 0.96769 0.96119 0.95660 1.69939 1.38049 1.22666 1.20889 0.86505 0.80519 0.79275 0.81409 1.20172 1.20907 1.19553 1.21392 0.98957 0.83086 0.96467 1.21491 0.96271 0.96596 0.98832 1.21742 0.95618 1.01874 1.00045 1.21746 1.00175 0.96690 1.01268 1.20337 0.94126 0.94793 1.02705 0.90669 0.91633 0.91619 0.92286 0.92324 0.86168 0.85662 0.76930 0.91282 0.94875 0.92124 0.90349 0.90726 0.91003 0.92726 0.93950 0.92742 0.92633 0.93002 0.92869 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.63 5.46 37.16 0.20 0.83 16 3 O -0.32 -5.00 10.13 -19.43 -0.20 -5.20 16 4 C 0.10 1.68 6.68 -39.28 -0.26 1.41 16 5 C -0.19 -3.11 9.03 -39.35 -0.36 -3.46 16 6 C -0.10 -1.80 10.03 -39.66 -0.40 -2.20 16 7 C -0.14 -2.82 7.53 -39.17 -0.29 -3.12 16 8 C -0.10 -2.10 5.62 -104.99 -0.59 -2.69 16 9 C 0.56 12.24 6.23 -12.33 -0.08 12.16 16 10 O -0.57 -13.08 14.95 5.32 0.08 -13.01 16 11 N -0.58 -12.42 2.28 -176.17 -0.40 -12.82 16 12 C 0.21 4.73 4.65 -5.20 -0.02 4.70 16 13 C -0.54 -13.30 7.28 -34.44 -0.25 -13.55 16 14 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.07 1.71 5.29 -17.82 -0.09 1.62 16 16 N -0.88 -22.45 13.29 55.43 0.74 -21.71 16 17 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 C 0.12 2.33 4.93 -4.04 -0.02 2.31 16 22 C -0.11 -1.84 3.12 -90.62 -0.28 -2.13 16 23 C -0.14 -2.25 8.30 37.16 0.31 -1.94 16 24 C -0.14 -1.89 9.19 37.16 0.34 -1.54 16 25 C -0.10 -1.94 9.53 -39.02 -0.37 -2.31 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 30 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 31 H 0.12 1.59 6.28 -52.49 -0.33 1.26 16 32 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 33 H 0.22 4.92 2.51 -52.49 -0.13 4.78 16 34 H 0.07 1.65 4.22 -51.94 -0.22 1.43 16 35 H 0.03 0.81 7.94 -51.92 -0.41 0.39 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 37 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 38 H 0.07 1.42 7.27 -51.93 -0.38 1.04 16 39 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 1.03 6.28 -51.93 -0.33 0.70 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 46 H 0.13 2.52 7.83 -52.49 -0.41 2.11 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -27.18 367.63 -8.23 -35.41 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.18 Total: 8.25 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.79 Total: -10.84 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.34 Total: -34.53 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.12 Total: -18.20 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.18 -8.23 -35.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751379573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.068 kcal (2) G-P(sol) polarization free energy of solvation -27.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds