Wall clock time and date at job start Tue Mar 31 2020 10:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99992 * 2 1 4 4 C 1.50693 * 109.47127 * 293.95636 * 3 2 1 5 5 C 1.38305 * 119.93517 * 90.00034 * 4 3 2 6 6 C 1.38092 * 120.07045 * 180.02562 * 5 4 3 7 7 C 1.38874 * 119.93490 * 359.97438 * 6 5 4 8 8 O 1.35753 * 120.07509 * 180.02562 * 7 6 5 9 9 C 1.34827 * 116.99577 * 5.53507 * 8 7 6 10 10 H 1.08004 * 120.00141 * 354.95448 * 9 8 7 11 11 C 1.38661 * 119.99905 * 174.94545 * 9 8 7 12 12 N 1.31550 * 119.99942 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99915 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47211 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47164 * 120.00415 * 13 11 9 16 16 H 1.48499 * 109.46979 * 240.00059 * 13 11 9 17 17 C 1.38884 * 119.86148 * 0.27751 * 7 6 5 18 18 C 1.38106 * 119.92660 * 359.44782 * 17 7 6 19 19 C 1.46900 * 111.00013 * 123.95482 * 2 1 3 20 20 C 1.52997 * 109.47569 * 74.54134 * 19 2 1 21 21 O 1.42904 * 110.01282 * 54.52108 * 20 19 2 22 22 C 1.54267 * 110.03025 * 293.13530 * 20 19 2 23 23 C 1.54966 * 104.15748 * 217.13083 * 22 20 19 24 24 C 1.54882 * 102.77864 * 37.89073 * 23 22 20 25 25 C 1.53870 * 110.03641 * 175.91662 * 20 19 2 26 26 H 1.08989 * 109.47311 * 48.42812 * 1 2 3 27 27 H 1.09003 * 109.47121 * 168.43153 * 1 2 3 28 28 H 1.09003 * 109.47020 * 288.42240 * 1 2 3 29 29 H 1.08992 * 109.47261 * 173.95098 * 3 2 1 30 30 H 1.09000 * 109.46849 * 53.95273 * 3 2 1 31 31 H 1.08001 * 119.95956 * 359.97438 * 5 4 3 32 32 H 1.08004 * 120.03568 * 179.97438 * 6 5 4 33 33 H 0.97006 * 120.00088 * 179.97438 * 12 11 9 34 34 H 1.07997 * 120.03592 * 179.72294 * 17 7 6 35 35 H 1.07997 * 119.96428 * 180.27276 * 18 17 7 36 36 H 1.08999 * 109.47057 * 194.54224 * 19 2 1 37 37 H 1.09007 * 109.47513 * 314.54154 * 19 2 1 38 38 H 0.96698 * 114.00269 * 300.70070 * 21 20 19 39 39 H 1.08998 * 110.49185 * 335.78102 * 22 20 19 40 40 H 1.09004 * 110.48499 * 98.42480 * 22 20 19 41 41 H 1.09002 * 110.72326 * 279.57104 * 23 22 20 42 42 H 1.09005 * 110.76273 * 156.22464 * 23 22 20 43 43 H 1.09002 * 110.48690 * 203.40548 * 24 23 22 44 44 H 1.08999 * 110.48730 * 80.75646 * 24 23 22 45 45 H 1.09003 * 110.03228 * 238.56921 * 25 20 19 46 46 H 1.08997 * 110.03417 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.4502 2.7491 -1.4063 6 6 0.1186 3.3689 -2.5950 7 6 0.9783 3.2873 -3.6825 8 8 0.6554 3.8960 -4.8522 9 6 -0.4565 4.6584 -4.8588 10 1 -1.0895 4.6979 -3.9845 11 6 -0.7875 5.3920 -5.9879 12 7 -0.0168 5.3436 -7.0529 13 14 -2.3277 6.4489 -5.9968 14 1 -3.0169 6.3305 -4.6867 15 1 -1.9540 7.8664 -6.2339 16 1 -3.2371 5.9894 -7.0772 17 6 2.1669 2.5773 -3.5726 18 6 2.4955 1.9643 -2.3794 19 6 1.9955 -0.7660 1.1376 20 6 1.8193 -2.2621 0.8704 21 8 2.4190 -2.6096 -0.3794 22 6 0.3196 -2.6232 0.8554 23 6 0.2593 -4.0195 1.5251 24 6 1.3243 -3.9090 2.6442 25 6 2.4581 -3.0794 2.0069 26 1 -0.3633 0.6818 -0.7687 27 1 -0.3633 -1.0068 -0.2061 28 1 -0.3633 0.3248 0.9750 29 1 3.0797 1.3444 0.1083 30 1 1.5611 1.9273 0.8309 31 1 -0.2183 2.8118 -0.5604 32 1 -0.8085 3.9166 -2.6788 33 1 -0.2485 5.8565 -7.8430 34 1 2.8355 2.5082 -4.4179 35 1 3.4217 1.4158 -2.2920 36 1 3.0543 -0.5423 1.2673 37 1 1.4527 -0.4922 2.0424 38 1 2.0512 -2.1352 -1.1375 39 1 -0.2533 -1.8981 1.4334 40 1 -0.0503 -2.6741 -0.1686 41 1 0.5265 -4.8005 0.8133 42 1 -0.7284 -4.2026 1.9484 43 1 1.6866 -4.8979 2.9250 44 1 0.9141 -3.3915 3.5114 45 1 3.2249 -3.7418 1.6051 46 1 2.8940 -2.4102 2.7487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752132388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:29 Heat of formation + Delta-G solvation = -69.744703 kcal Electronic energy + Delta-G solvation = -25014.506895 eV Core-core repulsion = 21482.788958 eV Total energy + Delta-G solvation = -3531.717937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98070 -40.47786 -38.72657 -36.91327 -35.60260 -34.29920 -31.90160 -31.74504 -30.36341 -29.27228 -27.96238 -27.41839 -25.80354 -23.59925 -22.93576 -21.77754 -21.67083 -20.63952 -19.82313 -18.80909 -17.68768 -17.01242 -16.64583 -16.44162 -16.25430 -16.20610 -15.89643 -15.47402 -15.34766 -15.08594 -14.52649 -14.39856 -14.26234 -14.13157 -13.70456 -13.54474 -13.47071 -13.04528 -12.88207 -12.77815 -12.69232 -12.41077 -12.27605 -12.19491 -12.13420 -12.06871 -11.95492 -11.54953 -11.41217 -11.22592 -11.14652 -10.80022 -10.67807 -9.73870 -9.27918 -8.86972 -8.46923 -6.14852 0.61992 0.69193 1.34718 1.43008 1.53015 2.17549 2.73163 3.02417 3.30072 3.38138 3.54484 3.67243 3.83347 3.95967 4.00875 4.05900 4.22350 4.31248 4.34189 4.43477 4.46918 4.55571 4.58629 4.62628 4.69065 4.74307 4.78695 4.84076 4.85388 4.93796 5.03721 5.06657 5.10605 5.15072 5.15580 5.16444 5.23945 5.32225 5.40669 5.48358 5.59419 5.72865 5.81813 6.03764 6.08824 6.16782 6.26617 6.96706 6.98041 7.79948 8.76719 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.029305 B = 0.002613 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.228228 B =10714.433693 C =10997.240489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.541 5.541 3 C 0.117 3.883 4 C -0.151 4.151 5 C -0.059 4.059 6 C -0.243 4.243 7 C 0.114 3.886 8 O -0.234 6.234 9 C -0.411 4.411 10 H 0.101 0.899 11 C -0.024 4.024 12 N -0.922 5.922 13 Si 1.019 2.981 14 H -0.251 1.251 15 H -0.269 1.269 16 H -0.269 1.269 17 C -0.206 4.206 18 C -0.046 4.046 19 C 0.034 3.966 20 C 0.135 3.865 21 O -0.572 6.572 22 C -0.150 4.150 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.114 4.114 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.034 0.966 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.272 0.728 34 H 0.110 0.890 35 H 0.143 0.857 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.385 0.615 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -14.814 21.875 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.266 5.266 3 C -0.010 4.010 4 C -0.152 4.152 5 C -0.078 4.078 6 C -0.262 4.262 7 C 0.064 3.936 8 O -0.141 6.141 9 C -0.488 4.488 10 H 0.118 0.882 11 C -0.222 4.222 12 N -0.560 5.560 13 Si 0.838 3.162 14 H -0.174 1.174 15 H -0.194 1.194 16 H -0.194 1.194 17 C -0.225 4.225 18 C -0.065 4.065 19 C -0.094 4.094 20 C 0.093 3.907 21 O -0.380 6.380 22 C -0.187 4.187 23 C -0.163 4.163 24 C -0.157 4.157 25 C -0.152 4.152 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.053 0.947 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.161 0.839 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.235 0.765 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.376 -15.355 21.426 26.396 hybrid contribution -1.178 1.513 -0.467 1.974 sum 0.198 -13.842 20.959 25.118 Atomic orbital electron populations 1.22971 0.87411 1.03765 1.00469 1.61813 1.08248 1.13495 1.43013 1.20806 1.00400 0.87312 0.92491 1.19535 0.95870 1.03063 0.96715 1.20888 0.96189 0.94921 0.95794 1.21197 1.01818 1.08427 0.94743 1.19938 0.94392 0.92908 0.86371 1.83945 1.43563 1.57280 1.29288 1.21844 1.00305 1.24163 1.02443 0.88156 1.26592 1.03023 0.98690 0.93859 1.70192 1.39774 1.41654 1.04385 0.84528 0.75223 0.76974 0.79465 1.17446 1.19369 1.19359 1.20456 0.96407 1.05485 1.00150 1.20816 0.99351 0.95834 0.90473 1.22924 1.00818 0.93804 0.91810 1.21888 0.91876 0.92016 0.84877 1.86412 1.65562 1.68787 1.17240 1.23338 0.96382 0.97845 1.01141 1.22527 0.99521 0.96629 0.97663 1.22354 0.95161 1.00265 0.97947 1.22170 0.98691 0.98753 0.95623 0.92368 0.89458 0.94711 0.89348 0.93544 0.84858 0.86603 0.91873 0.87192 0.83898 0.90239 0.92826 0.76541 0.90138 0.91406 0.92271 0.90637 0.90836 0.90434 0.91525 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 8.14 127.69 1.04 1.07 16 2 N -0.54 -10.95 3.95 -927.08 -3.66 -14.61 16 3 C 0.12 2.57 5.10 85.55 0.44 3.01 16 4 C -0.15 -4.53 4.92 -19.83 -0.10 -4.63 16 5 C -0.06 -1.99 7.84 22.25 0.17 -1.81 16 6 C -0.24 -10.48 9.17 22.39 0.21 -10.27 16 7 C 0.11 5.71 6.65 22.58 0.15 5.86 16 8 O -0.23 -14.23 9.76 -22.75 -0.22 -14.45 16 9 C -0.41 -24.11 9.49 67.92 0.64 -23.46 16 10 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 11 C -0.02 -1.40 5.49 84.84 0.47 -0.93 16 12 N -0.92 -57.05 13.67 21.61 0.30 -56.76 16 13 Si 1.02 43.05 29.55 68.60 2.03 45.08 16 14 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 15 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 17 C -0.21 -8.83 9.99 22.39 0.22 -8.60 16 18 C -0.05 -1.55 9.69 22.25 0.22 -1.33 16 19 C 0.03 0.58 4.11 86.30 0.35 0.93 16 20 C 0.13 2.32 1.12 -10.07 -0.01 2.31 16 21 O -0.57 -12.85 12.88 -148.98 -1.92 -14.77 16 22 C -0.15 -2.32 4.09 31.70 0.13 -2.19 16 23 C -0.13 -1.74 6.91 31.91 0.22 -1.52 16 24 C -0.12 -1.44 6.83 31.67 0.22 -1.22 16 25 C -0.11 -1.69 6.27 31.32 0.20 -1.49 16 26 H 0.06 1.43 5.37 -2.39 -0.01 1.41 16 27 H 0.09 1.60 4.40 -2.39 -0.01 1.58 16 28 H 0.03 0.60 7.88 -2.39 -0.02 0.58 16 29 H 0.09 1.76 7.78 -2.39 -0.02 1.74 16 30 H 0.05 0.94 8.06 -2.39 -0.02 0.92 16 31 H 0.13 3.63 7.83 -2.91 -0.02 3.61 16 32 H 0.12 5.13 5.64 -2.91 -0.02 5.11 16 33 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 34 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.08 1.33 7.76 -2.39 -0.02 1.31 16 37 H 0.05 0.78 7.76 -2.38 -0.02 0.77 16 38 H 0.39 8.33 8.36 -74.06 -0.62 7.71 16 39 H 0.08 1.13 6.48 -2.39 -0.02 1.12 16 40 H 0.07 1.18 6.88 -2.38 -0.02 1.16 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 1.15 7.96 -2.39 -0.02 1.13 16 46 H 0.08 1.01 7.67 -2.39 -0.02 0.99 16 Total: -1.00 -69.67 358.97 1.45 -68.22 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.37 Total: 31.58 kcal Atomic # 6 Polarization: -48.86 SS G_CDS: 4.56 Total: -44.29 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -3.36 Total: -71.36 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -2.14 Total: -29.22 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -69.67 1.45 -68.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752132388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.527 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds