Wall clock time and date at job start Tue Mar 31 2020 10:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00304 * 2 1 4 4 C 1.50695 * 109.46891 * 66.04472 * 3 2 1 5 5 C 1.38299 * 119.93247 * 90.00141 * 4 3 2 6 6 C 1.38101 * 120.07425 * 179.97438 * 5 4 3 7 7 C 1.38886 * 119.92536 * 0.02562 * 6 5 4 8 8 O 1.35750 * 120.06440 * 180.02562 * 7 6 5 9 9 C 1.34828 * 117.00075 * 5.53777 * 8 7 6 10 10 H 1.07993 * 120.00518 * 354.94289 * 9 8 7 11 11 C 1.38663 * 119.99751 * 174.94575 * 9 8 7 12 12 N 1.31556 * 120.00220 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99821 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47264 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47375 * 119.99795 * 13 11 9 16 16 H 1.48506 * 109.47301 * 239.99793 * 13 11 9 17 17 C 1.38874 * 119.86623 * 0.27854 * 7 6 5 18 18 C 1.38106 * 119.92542 * 359.44577 * 17 7 6 19 19 C 1.46897 * 110.99864 * 236.04637 * 2 1 3 20 20 C 1.53006 * 109.47096 * 293.95534 * 19 2 1 21 21 C 1.53175 * 109.54537 * 294.55611 * 20 19 2 22 22 C 1.53088 * 109.16449 * 183.15167 * 21 20 19 23 23 O 1.42894 * 109.41351 * 57.61081 * 22 21 20 24 24 C 1.42901 * 114.10180 * 298.83877 * 23 22 21 25 25 C 1.53092 * 109.41303 * 61.15935 * 24 23 22 26 26 H 1.09004 * 109.47117 * 59.99910 * 1 2 3 27 27 H 1.08998 * 109.47706 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47039 * 300.00390 * 1 2 3 29 29 H 1.08998 * 109.46720 * 306.04904 * 3 2 1 30 30 H 1.08996 * 109.47268 * 186.04505 * 3 2 1 31 31 H 1.07999 * 119.96503 * 0.02562 * 5 4 3 32 32 H 1.07992 * 120.03608 * 180.02562 * 6 5 4 33 33 H 0.96996 * 120.00178 * 179.97438 * 12 11 9 34 34 H 1.07996 * 120.03745 * 179.72497 * 17 7 6 35 35 H 1.07997 * 119.96326 * 180.27708 * 18 17 7 36 36 H 1.08996 * 109.47429 * 53.95430 * 19 2 1 37 37 H 1.09000 * 109.47615 * 173.95889 * 19 2 1 38 38 H 1.08999 * 109.54090 * 54.82643 * 20 19 2 39 39 H 1.09006 * 109.52206 * 303.06134 * 21 20 19 40 40 H 1.09005 * 109.52097 * 63.24352 * 21 20 19 41 41 H 1.09001 * 109.47869 * 297.62215 * 22 21 20 42 42 H 1.09003 * 109.48151 * 177.59123 * 22 21 20 43 43 H 1.09004 * 109.48007 * 301.18271 * 24 23 22 44 44 H 1.08994 * 109.49481 * 181.15107 * 24 23 22 45 45 H 1.08997 * 109.52496 * 182.48998 * 25 24 23 46 46 H 1.09002 * 109.52205 * 62.30113 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.4953 1.9639 2.3796 6 6 2.1699 2.5824 3.5707 7 6 0.9789 3.2881 3.6822 8 8 0.6565 3.8976 4.8516 9 6 1.5853 3.8776 5.8287 10 1 2.5013 3.3223 5.6918 11 6 1.3643 4.5701 7.0096 12 7 0.2485 5.2469 7.1763 13 14 2.6513 4.5430 8.3630 14 1 3.8068 3.7163 7.9309 15 1 3.1090 5.9285 8.6387 16 1 2.0612 3.9621 9.5958 17 6 0.1161 3.3645 2.5967 18 6 0.4500 2.7485 1.4066 19 6 1.9954 -0.7660 -1.1376 20 6 1.6313 -2.2426 -0.9703 21 6 2.3511 -2.8122 0.2560 22 6 2.0436 -4.3075 0.3697 23 8 2.4476 -4.9682 -0.8312 24 6 1.7730 -4.5098 -2.0046 25 6 2.0697 -3.0225 -2.2138 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.5611 1.9273 -0.8309 30 1 3.0798 1.3444 -0.1082 31 1 3.4215 1.4154 2.2921 32 1 2.8408 2.5175 4.4145 33 1 0.0938 5.7310 8.0024 34 1 -0.8128 3.9087 2.6818 35 1 -0.2185 2.8113 0.5607 36 1 1.5611 -0.3873 -2.0628 37 1 3.0797 -0.6612 -1.1756 38 1 0.5535 -2.3399 -0.8401 39 1 3.4261 -2.6686 0.1467 40 1 2.0036 -2.2995 1.1530 41 1 0.9731 -4.4481 0.5196 42 1 2.5875 -4.7272 1.2160 43 1 0.6990 -4.6530 -1.8859 44 1 2.1217 -5.0750 -2.8689 45 1 1.5208 -2.6603 -3.0831 46 1 3.1389 -2.8832 -2.3730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767711273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:36 Heat of formation + Delta-G solvation = -72.360006 kcal Electronic energy + Delta-G solvation = -24691.393531 eV Core-core repulsion = 21159.562186 eV Total energy + Delta-G solvation = -3531.831345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88792 -40.41208 -39.01629 -37.56837 -34.81532 -34.21467 -31.95282 -31.84291 -31.33892 -28.53260 -27.98464 -26.97659 -24.74336 -24.35939 -23.56202 -22.52976 -21.57602 -20.76711 -19.83050 -18.81352 -17.15313 -16.95128 -16.73351 -16.56483 -16.37859 -16.09208 -15.90615 -15.58662 -15.50958 -15.28118 -14.95233 -14.70278 -14.36184 -14.18912 -13.96224 -13.57466 -13.30023 -13.22286 -12.96349 -12.87479 -12.65233 -12.58863 -12.37230 -12.20948 -12.18349 -12.11944 -11.98182 -11.62122 -11.35622 -11.15354 -11.10241 -10.79443 -10.40221 -9.74462 -9.20363 -8.85494 -8.47020 -6.14785 0.61918 0.69935 1.35107 1.43170 1.53390 2.17890 2.75038 3.01348 3.06125 3.33708 3.53366 3.75656 3.93086 3.98211 4.05069 4.08707 4.17120 4.21688 4.35097 4.42060 4.43701 4.51094 4.52203 4.61647 4.65206 4.74048 4.76420 4.84070 4.84371 4.87978 4.90008 4.97646 5.04601 5.10471 5.14728 5.17385 5.24558 5.31955 5.35437 5.49035 5.58651 5.73611 5.83516 6.03976 6.15792 6.21595 6.29402 6.32338 6.98120 7.79637 8.76605 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.002607 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.583604 B =10739.791494 C =11480.623745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.116 3.884 4 C -0.151 4.151 5 C -0.050 4.050 6 C -0.243 4.243 7 C 0.113 3.887 8 O -0.234 6.234 9 C -0.411 4.411 10 H 0.101 0.899 11 C -0.024 4.024 12 N -0.922 5.922 13 Si 1.018 2.982 14 H -0.252 1.252 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.205 4.205 18 C -0.058 4.058 19 C 0.065 3.935 20 C -0.083 4.083 21 C -0.136 4.136 22 C 0.057 3.943 23 O -0.407 6.407 24 C 0.056 3.944 25 C -0.145 4.145 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.116 0.884 33 H 0.272 0.728 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 -16.416 -19.899 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.269 5.269 3 C -0.011 4.011 4 C -0.152 4.152 5 C -0.068 4.068 6 C -0.263 4.263 7 C 0.063 3.937 8 O -0.141 6.141 9 C -0.487 4.487 10 H 0.118 0.882 11 C -0.221 4.221 12 N -0.560 5.560 13 Si 0.838 3.162 14 H -0.175 1.175 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.224 4.224 18 C -0.076 4.076 19 C -0.063 4.063 20 C -0.102 4.102 21 C -0.174 4.174 22 C -0.019 4.019 23 O -0.326 6.326 24 C -0.020 4.020 25 C -0.183 4.183 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.159 0.841 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.123 0.877 45 H 0.105 0.895 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.300 -16.551 -19.273 25.766 hybrid contribution -0.315 1.039 0.455 1.177 sum 3.984 -15.512 -18.819 24.711 Atomic orbital electron populations 1.22444 0.87501 1.02081 1.00587 1.61923 1.08174 1.13242 1.43541 1.20800 1.00399 0.87462 0.92426 1.19565 0.95898 1.03007 0.96696 1.20872 0.99195 0.95748 0.91015 1.21239 0.98823 1.05834 1.00367 1.19936 0.94371 0.92462 0.86925 1.83937 1.42213 1.68155 1.19766 1.21845 0.99795 1.32874 0.94236 0.88211 1.26586 1.00184 0.94889 1.00461 1.70188 1.26537 1.31732 1.27564 0.84530 0.76694 0.78914 0.76079 1.17501 1.19316 1.19335 1.20414 1.01010 1.08223 0.92797 1.20834 0.96246 0.95015 0.95509 1.22152 1.00272 0.92786 0.91061 1.21201 1.00166 0.93803 0.95005 1.22038 1.00741 0.95355 0.99237 1.22675 0.99667 0.92442 0.87133 1.87891 1.65850 1.62515 1.16358 1.22716 0.96743 0.94587 0.87986 1.22181 1.02584 0.95489 0.98042 0.94890 0.90830 0.92598 0.93410 0.89490 0.84723 0.86660 0.91869 0.87117 0.84114 0.93995 0.90557 0.91040 0.92019 0.90937 0.93004 0.88743 0.92792 0.87719 0.89481 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.94 127.69 1.14 1.59 16 2 N -0.54 -11.30 4.30 -927.06 -3.98 -15.28 16 3 C 0.12 2.58 5.12 85.56 0.44 3.02 16 4 C -0.15 -4.60 4.89 -19.84 -0.10 -4.70 16 5 C -0.05 -1.73 9.69 22.25 0.22 -1.52 16 6 C -0.24 -10.74 9.17 22.39 0.21 -10.53 16 7 C 0.11 5.71 6.65 22.58 0.15 5.86 16 8 O -0.23 -14.27 9.76 -22.72 -0.22 -14.50 16 9 C -0.41 -24.27 9.49 67.92 0.64 -23.62 16 10 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 11 C -0.02 -1.38 5.49 84.84 0.47 -0.91 16 12 N -0.92 -57.14 13.67 21.62 0.30 -56.84 16 13 Si 1.02 43.35 29.55 68.60 2.03 45.37 16 14 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 15 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 17 C -0.21 -8.76 9.99 22.39 0.22 -8.54 16 18 C -0.06 -1.90 7.95 22.25 0.18 -1.72 16 19 C 0.06 1.03 4.35 86.31 0.38 1.40 16 20 C -0.08 -1.24 2.20 -10.67 -0.02 -1.27 16 21 C -0.14 -2.41 5.27 30.68 0.16 -2.25 16 22 C 0.06 0.99 6.84 72.01 0.49 1.48 16 23 O -0.41 -7.80 10.76 -148.98 -1.60 -9.40 16 24 C 0.06 0.75 6.84 72.01 0.49 1.24 16 25 C -0.14 -1.76 5.42 30.69 0.17 -1.59 16 26 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.07 1.34 6.20 -2.39 -0.01 1.33 16 28 H 0.06 1.40 6.16 -2.39 -0.01 1.39 16 29 H 0.05 0.96 8.06 -2.39 -0.02 0.94 16 30 H 0.09 1.75 7.87 -2.39 -0.02 1.73 16 31 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 33 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 35 H 0.14 3.68 8.03 -2.91 -0.02 3.65 16 36 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 37 H 0.08 1.19 7.93 -2.39 -0.02 1.17 16 38 H 0.07 1.11 6.26 -2.39 -0.01 1.09 16 39 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.07 1.52 7.87 -2.38 -0.02 1.50 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -70.48 364.59 2.70 -67.78 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.95 Total: 24.91 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 5.23 Total: -42.06 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -3.69 Total: -72.12 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -1.83 Total: -23.89 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.48 2.70 -67.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767711273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.579 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds