Wall clock time and date at job start Tue Mar 31 2020 09:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47084 * 2 1 4 4 C 1.35893 * 117.00007 * 179.97438 * 3 2 1 5 5 C 1.38795 * 120.02877 * 359.97438 * 4 3 2 6 6 C 1.38154 * 120.05506 * 179.97438 * 5 4 3 7 7 C 1.38194 * 120.11322 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.97752 * 180.02562 * 7 6 5 9 9 N 1.46897 * 109.47316 * 260.00116 * 8 7 6 10 10 C 1.46891 * 111.00079 * 189.99965 * 9 8 7 11 11 C 1.50701 * 109.47278 * 75.54053 * 10 9 8 12 12 H 1.07993 * 120.00077 * 355.67038 * 11 10 9 13 13 C 1.37883 * 119.99779 * 175.66901 * 11 10 9 14 14 N 1.31516 * 120.00217 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99637 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47382 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46988 * 120.00165 * 15 13 11 18 18 H 1.48501 * 109.46872 * 239.99819 * 15 13 11 19 19 C 1.46901 * 110.99992 * 66.04086 * 9 8 7 20 20 C 1.53000 * 109.46815 * 195.58106 * 19 9 8 21 21 C 1.53001 * 117.50040 * 244.14324 * 20 19 9 22 22 C 1.53004 * 117.49601 * 175.48339 * 20 19 9 23 23 C 1.38761 * 120.05151 * 0.04287 * 7 6 5 24 24 O 1.35895 * 120.02656 * 180.02562 * 23 7 6 25 25 C 1.38612 * 120.02676 * 179.72317 * 4 3 2 26 26 H 1.09001 * 109.46830 * 60.00972 * 1 2 3 27 27 H 1.09005 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47619 * 300.00622 * 1 2 3 29 29 H 1.08998 * 109.47619 * 239.99378 * 2 1 3 30 30 H 1.09000 * 109.46403 * 119.99351 * 2 1 3 31 31 H 1.08003 * 119.97011 * 359.97082 * 5 4 3 32 32 H 1.08002 * 119.94064 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.46941 * 19.99927 * 8 7 6 34 34 H 1.09003 * 109.47365 * 139.99544 * 8 7 6 35 35 H 1.09002 * 109.47214 * 195.54202 * 10 9 8 36 36 H 1.09006 * 109.47433 * 315.53673 * 10 9 8 37 37 H 0.96997 * 119.99674 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47174 * 315.58027 * 19 9 8 39 39 H 1.09002 * 109.46963 * 75.58280 * 19 9 8 40 40 H 1.09001 * 115.55288 * 29.82378 * 20 19 9 41 41 H 1.08998 * 117.50025 * 0.02562 * 21 20 19 42 42 H 1.09002 * 117.49995 * 145.02476 * 21 20 19 43 43 H 1.08994 * 117.50056 * 214.97778 * 22 20 19 44 44 H 1.09000 * 117.50166 * 0.02562 * 22 20 19 45 45 H 0.96705 * 113.99971 * 89.99694 * 24 23 7 46 46 H 1.07997 * 120.05662 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1996 0.4250 0.0016 6 6 5.5693 0.6054 0.0016 7 6 6.1006 1.8812 0.0011 8 6 7.5951 2.0744 0.0005 9 7 8.0504 2.3760 1.3642 10 6 9.4561 2.8023 1.3677 11 6 9.5531 4.2177 0.8594 12 1 8.6700 4.7233 0.4978 13 6 10.7694 4.8671 0.8561 14 7 11.8448 4.2516 1.2969 15 14 10.8895 6.6218 0.2267 16 1 9.5471 7.0848 -0.2079 17 1 11.3894 7.5037 1.3118 18 1 11.8274 6.6720 -0.9236 19 6 7.8471 1.2248 2.2538 20 6 7.9582 1.6800 3.7103 21 6 9.1071 1.1084 4.5435 22 6 7.6711 0.6432 4.7983 23 6 5.2590 2.9844 0.0015 24 8 5.7820 4.2387 0.0005 25 6 3.8839 2.8059 -0.0052 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.7868 -0.5730 0.0025 32 1 6.2259 -0.2521 0.0020 33 1 8.0791 1.1632 -0.3509 34 1 7.8544 2.9015 -0.6604 35 1 9.8482 2.7534 2.3836 36 1 10.0372 2.1437 0.7220 37 1 12.7005 4.7084 1.2942 38 1 6.8579 0.8014 2.0798 39 1 8.6065 0.4698 2.0502 40 1 7.6590 2.7099 3.9051 41 1 9.7841 0.4084 4.0539 42 1 9.5636 1.7622 5.2867 43 1 7.1837 0.9910 5.7089 44 1 7.4036 -0.3633 4.4764 45 1 5.9326 4.6013 -0.8833 46 1 3.2273 3.6633 -0.0097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769335602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:35 Heat of formation + Delta-G solvation = -28.577976 kcal Electronic energy + Delta-G solvation = -25319.420416 eV Core-core repulsion = 21789.487603 eV Total energy + Delta-G solvation = -3529.932814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.27835 -38.63564 -37.49129 -35.89943 -35.16047 -32.59522 -32.03790 -30.18699 -29.65276 -27.53198 -26.04048 -24.13426 -23.56930 -22.18288 -21.90386 -21.32902 -20.46187 -19.46351 -18.68545 -16.77955 -16.40834 -16.21735 -16.07086 -15.63514 -15.04843 -14.76683 -14.45972 -14.21489 -13.89894 -13.67585 -13.50770 -13.30205 -12.94206 -12.85318 -12.51502 -12.18476 -11.93619 -11.89159 -11.68442 -11.23525 -11.15951 -11.11320 -10.85139 -10.72417 -10.61563 -10.55777 -10.54740 -10.16941 -9.85983 -9.75692 -9.28198 -9.08174 -8.59429 -8.34107 -7.90975 -7.13154 -5.93180 -3.92663 1.40878 1.54613 3.07569 3.35916 3.43685 3.48741 3.77535 4.29715 4.50772 4.58519 4.67668 4.72072 4.93281 4.95185 5.01169 5.11844 5.23848 5.27846 5.35771 5.41648 5.43294 5.51720 5.52209 5.66490 5.72548 5.77541 5.96283 5.97682 6.05751 6.11284 6.20802 6.31206 6.32840 6.39869 6.44915 6.49669 6.53697 6.78708 6.83337 6.91171 7.35325 7.41062 7.44426 7.94614 8.07612 8.22270 8.31666 8.65907 9.17254 9.70652 11.17621 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.003986 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.281036 B = 7022.104559 C = 8421.274975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.135 3.865 5 C -0.222 4.222 6 C -0.065 4.065 7 C -0.126 4.126 8 C 0.111 3.889 9 N -0.519 5.519 10 C 0.192 3.808 11 C -0.496 4.496 12 H 0.068 0.932 13 C 0.052 3.948 14 N -0.902 5.902 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.288 1.288 19 C 0.084 3.916 20 C -0.125 4.125 21 C -0.178 4.178 22 C -0.191 4.191 23 C 0.174 3.826 24 O -0.474 6.474 25 C -0.186 4.186 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.024 0.976 34 H 0.090 0.910 35 H 0.040 0.960 36 H -0.015 1.015 37 H 0.258 0.742 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.388 0.612 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.654 -10.203 -2.505 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.090 3.910 5 C -0.240 4.240 6 C -0.084 4.084 7 C -0.127 4.127 8 C -0.017 4.017 9 N -0.243 5.243 10 C 0.068 3.932 11 C -0.535 4.535 12 H 0.086 0.914 13 C -0.148 4.148 14 N -0.542 5.542 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.214 1.214 19 C -0.044 4.044 20 C -0.144 4.144 21 C -0.215 4.215 22 C -0.228 4.228 23 C 0.128 3.872 24 O -0.283 6.283 25 C -0.206 4.206 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.042 0.958 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.002 0.998 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.244 0.756 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.907 -9.688 -1.696 20.430 hybrid contribution 0.879 0.073 -0.971 1.312 sum -17.028 -9.615 -2.667 19.736 Atomic orbital electron populations 1.21774 0.92951 1.02688 1.03482 1.22736 0.95636 0.82262 1.01369 1.86038 1.19312 1.28992 1.88961 1.18628 0.81921 0.93607 0.96880 1.21098 0.94194 0.97647 1.11091 1.20742 0.94034 0.96514 0.97137 1.20378 0.97181 0.92184 1.02983 1.20735 0.88187 0.99909 0.92891 1.62079 1.24846 1.31520 1.05883 1.19785 0.80672 0.95270 0.97498 1.21280 0.93926 0.98030 1.40256 0.91383 1.24988 0.95846 0.98027 0.95965 1.69976 0.99249 1.37198 1.47814 0.86498 0.77947 0.84980 0.78310 1.19596 1.21241 1.21397 1.21618 0.99227 0.92299 0.91269 1.22236 1.01907 0.98575 0.91674 1.22962 0.91005 1.03769 1.03789 1.22932 0.99763 0.99372 1.00755 1.17912 0.88886 0.84905 0.95466 1.84953 1.84062 1.26728 1.32578 1.20611 0.94796 0.95341 1.09805 0.91594 0.90511 0.91536 0.92150 0.92087 0.85874 0.85905 0.95772 0.89212 0.94237 0.99757 0.93225 0.91807 0.96157 0.87104 0.89319 0.89216 0.89442 0.89639 0.75603 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.48 5.46 37.16 0.20 0.69 16 3 O -0.32 -4.00 10.13 -19.40 -0.20 -4.20 16 4 C 0.13 1.86 6.68 -39.24 -0.26 1.60 16 5 C -0.22 -2.83 9.04 -39.41 -0.36 -3.18 16 6 C -0.07 -0.92 8.31 -39.63 -0.33 -1.25 16 7 C -0.13 -2.07 4.65 -104.45 -0.49 -2.55 16 8 C 0.11 2.11 4.58 -4.98 -0.02 2.08 16 9 N -0.52 -11.23 4.37 -237.52 -1.04 -12.27 16 10 C 0.19 4.99 4.59 -4.98 -0.02 4.97 16 11 C -0.50 -13.85 8.60 -34.44 -0.30 -14.15 16 12 H 0.07 1.89 7.66 -52.49 -0.40 1.49 16 13 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 C 0.08 1.59 5.11 -3.82 -0.02 1.57 16 20 C -0.13 -2.30 4.96 -90.62 -0.45 -2.75 16 21 C -0.18 -3.01 9.97 -26.69 -0.27 -3.27 16 22 C -0.19 -2.84 10.26 -26.69 -0.27 -3.11 16 23 C 0.17 2.83 6.68 -39.23 -0.26 2.57 16 24 O -0.47 -8.00 12.73 -19.41 -0.25 -8.24 16 25 C -0.19 -2.76 9.93 -39.29 -0.39 -3.15 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.12 1.25 6.29 -52.48 -0.33 0.92 16 32 H 0.12 1.54 8.03 -52.49 -0.42 1.12 16 33 H 0.02 0.44 7.98 -51.93 -0.41 0.03 16 34 H 0.09 1.82 7.02 -51.93 -0.36 1.46 16 35 H 0.04 1.10 6.93 -51.93 -0.36 0.74 16 36 H -0.02 -0.42 8.00 -51.93 -0.42 -0.84 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.06 1.12 5.88 -51.93 -0.31 0.81 16 39 H 0.02 0.39 7.79 -51.93 -0.40 -0.02 16 40 H 0.11 2.25 8.14 -51.93 -0.42 1.83 16 41 H 0.09 1.49 8.03 -51.93 -0.42 1.08 16 42 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.39 4.76 9.06 45.56 0.41 5.18 16 46 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -32.17 377.30 -9.76 -41.93 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.73 Total: 5.71 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -2.95 Total: -19.19 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.30 Total: -38.47 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.44 Total: -12.44 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.17 -9.76 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769335602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.356 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds