Wall clock time and date at job start Tue Mar 31 2020 09:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47518 * 2 1 4 4 C 1.42898 * 114.00020 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46643 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46855 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46855 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46820 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00051 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99353 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99931 * 180.02562 * 9 8 7 12 12 C 1.50703 * 109.47000 * 180.02562 * 11 9 8 13 13 C 1.37645 * 120.13007 * 265.30719 * 12 11 9 14 14 C 1.38606 * 120.24649 * 180.32491 * 13 12 11 15 15 C 1.38653 * 120.50471 * 359.65965 * 14 13 12 16 16 C 1.37600 * 120.24898 * 0.02562 * 15 14 13 17 17 C 1.40696 * 120.12867 * 84.99790 * 12 11 9 18 18 C 1.41400 * 120.24530 * 359.97438 * 17 12 11 19 19 H 1.08003 * 119.99719 * 25.87056 * 18 17 12 20 20 C 1.39942 * 120.00205 * 205.88123 * 18 17 12 21 21 N 1.30821 * 119.99968 * 16.29869 * 20 18 17 22 22 Si 1.86803 * 120.00009 * 196.30797 * 20 18 17 23 23 H 1.48496 * 109.47194 * 265.18190 * 22 20 18 24 24 H 1.48505 * 109.46937 * 25.18007 * 22 20 18 25 25 H 1.48498 * 109.47234 * 145.18150 * 22 20 18 26 26 H 1.08999 * 109.47447 * 300.00313 * 1 2 3 27 27 H 1.09006 * 109.46861 * 60.00660 * 1 2 3 28 28 H 1.09003 * 109.47531 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47265 * 239.99392 * 2 1 3 30 30 H 1.09006 * 109.46821 * 119.99896 * 2 1 3 31 31 H 1.09000 * 109.47301 * 60.00439 * 4 3 2 32 32 H 1.08997 * 109.47239 * 299.99703 * 4 3 2 33 33 H 1.08994 * 109.47287 * 59.99958 * 5 4 3 34 34 H 1.09005 * 109.47160 * 299.99560 * 5 4 3 35 35 H 1.08994 * 109.47317 * 59.99842 * 6 5 4 36 36 H 1.08997 * 109.47023 * 299.99696 * 6 5 4 37 37 H 1.08994 * 109.47287 * 59.99824 * 7 6 5 38 38 H 1.08997 * 109.47057 * 299.99675 * 7 6 5 39 39 H 0.97002 * 120.00149 * 0.02562 * 8 7 6 40 40 H 1.09000 * 109.47297 * 60.00731 * 11 9 8 41 41 H 1.08997 * 109.47185 * 300.00030 * 11 9 8 42 42 H 1.07994 * 119.87429 * 0.02562 * 13 12 11 43 43 H 1.08002 * 119.74758 * 179.69746 * 14 13 12 44 44 H 1.07998 * 119.87893 * 180.02562 * 15 14 13 45 45 H 1.07997 * 120.12664 * 180.02562 * 16 15 14 46 46 H 0.97002 * 120.00001 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3507 3.0590 0.0012 7 6 5.7452 4.5373 0.0011 8 7 7.2056 4.6530 0.0017 9 6 7.7853 5.8697 0.0012 10 8 7.0978 6.8688 0.0008 11 6 9.2875 5.9886 0.0013 12 6 9.6761 7.4447 0.0013 13 6 9.9484 8.0872 -1.1851 14 6 10.3126 9.4245 -1.1873 15 6 10.4002 10.1321 0.0019 16 6 10.1262 9.5119 1.1993 17 6 9.7557 8.1543 1.2136 18 6 9.4714 7.5067 2.4380 19 1 9.6018 6.4382 2.5267 20 6 9.0208 8.2501 3.5347 21 7 8.5599 9.4617 3.3587 22 14 9.0777 7.5124 5.2500 23 1 7.7628 6.9011 5.5698 24 1 10.1346 6.4706 5.3059 25 1 9.3812 8.5790 6.2377 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.8932 -0.5139 0.8901 31 1 3.8340 0.9764 -0.8892 32 1 3.8333 0.9766 0.8908 33 1 3.4223 3.4215 0.8911 34 1 3.4230 3.4221 -0.8889 35 1 5.7534 2.5759 -0.8890 36 1 5.7534 2.5752 0.8909 37 1 5.3424 5.0209 0.8910 38 1 5.3424 5.0208 -0.8889 39 1 7.7554 3.8538 0.0017 40 1 9.6903 5.5048 -0.8885 41 1 9.6902 5.5054 0.8914 42 1 9.8828 7.5459 -2.1173 43 1 10.5293 9.9194 -2.1225 44 1 10.6845 11.1739 -0.0116 45 1 10.1946 10.0650 2.1243 46 1 8.2479 9.9771 4.1189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776831451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:28 Heat of formation + Delta-G solvation = -90.008013 kcal Electronic energy + Delta-G solvation = -24010.887942 eV Core-core repulsion = 20478.291322 eV Total energy + Delta-G solvation = -3532.596620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.12119 -38.43229 -37.32178 -35.62763 -33.53957 -33.19909 -31.72223 -31.21771 -29.40049 -28.20839 -26.41796 -24.92241 -23.20592 -23.01370 -21.40138 -20.88325 -20.35323 -19.15563 -17.16824 -16.92195 -16.74231 -16.09473 -15.73931 -15.59377 -15.27832 -14.62055 -14.52965 -14.32753 -13.83965 -13.51251 -13.10974 -13.00020 -12.94582 -12.54578 -12.34040 -12.29572 -11.96507 -11.69226 -11.56513 -11.51415 -11.44776 -11.11910 -11.07947 -11.06031 -10.89904 -10.77249 -10.64649 -10.36081 -9.89890 -9.42852 -9.29160 -9.08552 -9.01101 -8.56736 -7.25870 -7.24051 -6.64678 -4.25630 2.84491 3.01871 3.10153 3.13446 3.28712 3.31510 3.52224 3.85634 3.98545 4.65218 4.65673 4.71525 4.74346 4.85782 4.99406 5.04851 5.10720 5.13675 5.29711 5.40047 5.53595 5.57992 5.60380 5.72603 5.75029 5.83860 5.93159 6.02831 6.09429 6.14470 6.27325 6.34720 6.43404 6.58288 6.83160 6.91386 6.92687 7.17504 7.34731 7.48295 7.70369 7.96558 8.05324 8.13057 8.18974 8.38696 8.71029 8.97519 9.04613 9.07589 10.30337 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.002709 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.730807 B =10333.601229 C =11656.060981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.064 3.936 5 C -0.116 4.116 6 C -0.126 4.126 7 C 0.122 3.878 8 N -0.749 5.749 9 C 0.514 3.486 10 O -0.512 6.512 11 C -0.068 4.068 12 C -0.182 4.182 13 C -0.081 4.081 14 C -0.242 4.242 15 C -0.106 4.106 16 C -0.162 4.162 17 C 0.130 3.870 18 C -0.459 4.459 19 H 0.074 0.926 20 C 0.078 3.922 21 N -0.790 5.790 22 Si 0.902 3.098 23 H -0.272 1.272 24 H -0.261 1.261 25 H -0.276 1.276 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.393 0.607 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -17.755 -4.103 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.310 6.310 4 C -0.013 4.013 5 C -0.154 4.154 6 C -0.164 4.164 7 C -0.002 4.002 8 N -0.404 5.404 9 C 0.301 3.699 10 O -0.384 6.384 11 C -0.108 4.108 12 C -0.184 4.184 13 C -0.099 4.099 14 C -0.261 4.261 15 C -0.124 4.124 16 C -0.181 4.181 17 C 0.127 3.873 18 C -0.489 4.489 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.415 5.415 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.185 1.185 25 H -0.201 1.201 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.226 0.774 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.705 -16.620 -3.965 19.176 hybrid contribution 0.234 -0.892 0.828 1.239 sum -8.471 -17.512 -3.138 19.705 Atomic orbital electron populations 1.21749 0.93767 1.02186 1.03242 1.22448 0.95632 0.83915 0.99972 1.87893 1.21396 1.26328 1.95427 1.22508 0.81011 0.97659 1.00101 1.21417 0.95101 0.94895 1.04025 1.21680 0.95278 0.96718 1.02735 1.21162 0.81607 0.95110 1.02320 1.46120 1.06609 1.08753 1.78918 1.21098 0.91435 0.82225 0.75138 1.90710 1.65037 1.36272 1.46404 1.20246 0.90737 0.97552 1.02291 1.19000 1.12164 0.93736 0.93458 1.20287 0.99748 0.94499 0.95377 1.20292 1.14514 0.95062 0.96273 1.20670 1.00800 0.97357 0.93579 1.21272 1.04123 0.96232 0.96511 1.17334 0.86959 0.91635 0.91344 1.19436 1.39555 0.95124 0.94797 0.90765 1.25845 0.92691 0.94545 1.00923 1.69843 1.28695 1.10272 1.32703 0.86415 0.79370 0.79818 0.81786 1.19755 1.18498 1.20080 0.91790 0.91821 0.91160 0.93501 0.93477 0.93358 0.93308 0.90630 0.90729 0.91274 0.91142 0.91720 0.91963 0.77367 0.90846 0.89091 0.89799 0.89718 0.89638 0.86608 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.15 0.38 -0.61 16 2 C 0.06 0.43 6.66 37.15 0.25 0.68 16 3 O -0.39 -4.08 10.34 -35.23 -0.36 -4.45 16 4 C 0.06 0.56 5.94 37.16 0.22 0.78 16 5 C -0.12 -1.11 5.58 -26.73 -0.15 -1.26 16 6 C -0.13 -1.19 5.33 -26.73 -0.14 -1.33 16 7 C 0.12 1.67 5.67 -4.04 -0.02 1.65 16 8 N -0.75 -11.28 5.56 -60.30 -0.33 -11.61 16 9 C 0.51 10.52 7.82 -10.99 -0.09 10.44 16 10 O -0.51 -13.25 16.03 5.56 0.09 -13.16 16 11 C -0.07 -1.35 5.35 -29.04 -0.16 -1.51 16 12 C -0.18 -4.45 4.43 -103.91 -0.46 -4.91 16 13 C -0.08 -1.90 9.66 -39.66 -0.38 -2.29 16 14 C -0.24 -5.75 10.05 -39.29 -0.39 -6.15 16 15 C -0.11 -2.62 10.02 -39.66 -0.40 -3.02 16 16 C -0.16 -4.40 8.68 -38.87 -0.34 -4.74 16 17 C 0.13 3.52 5.56 -106.82 -0.59 2.93 16 18 C -0.46 -12.22 8.46 -37.74 -0.32 -12.54 16 19 H 0.07 1.85 6.36 -52.48 -0.33 1.52 16 20 C 0.08 2.01 5.16 -17.34 -0.09 1.92 16 21 N -0.79 -21.45 10.98 55.55 0.61 -20.84 16 22 Si 0.90 19.12 29.59 -169.99 -5.03 14.09 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.39 4.48 8.47 -40.82 -0.35 4.13 16 40 H 0.07 1.19 8.06 -51.93 -0.42 0.78 16 41 H 0.09 1.71 6.48 -51.93 -0.34 1.37 16 42 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 45 H 0.12 3.22 6.23 -52.49 -0.33 2.89 16 46 H 0.28 6.89 8.30 -40.82 -0.34 6.56 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -33.10 382.41 -9.61 -42.71 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.66 Total: 7.45 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.68 Total: -19.94 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.27 Total: -32.45 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.28 Total: -17.61 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.10 -9.61 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776831451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.301 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds