Wall clock time and date at job start Tue Mar 31 2020 09:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47518 * 2 1 4 4 C 1.42898 * 114.00020 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46643 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46855 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46855 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46820 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00051 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99353 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99931 * 180.02562 * 9 8 7 12 12 C 1.50703 * 109.47000 * 180.02562 * 11 9 8 13 13 C 1.37645 * 120.13007 * 265.30719 * 12 11 9 14 14 C 1.38606 * 120.24649 * 180.32491 * 13 12 11 15 15 C 1.38653 * 120.50471 * 359.65965 * 14 13 12 16 16 C 1.37600 * 120.24898 * 0.02562 * 15 14 13 17 17 C 1.40696 * 120.12867 * 84.99790 * 12 11 9 18 18 C 1.41400 * 120.24530 * 359.97438 * 17 12 11 19 19 H 1.08003 * 119.99719 * 25.87056 * 18 17 12 20 20 C 1.39942 * 120.00205 * 205.88123 * 18 17 12 21 21 N 1.30821 * 119.99968 * 16.29869 * 20 18 17 22 22 Si 1.86803 * 120.00009 * 196.30797 * 20 18 17 23 23 H 1.48496 * 109.47194 * 265.18190 * 22 20 18 24 24 H 1.48505 * 109.46937 * 25.18007 * 22 20 18 25 25 H 1.48498 * 109.47234 * 145.18150 * 22 20 18 26 26 H 1.08999 * 109.47447 * 300.00313 * 1 2 3 27 27 H 1.09006 * 109.46861 * 60.00660 * 1 2 3 28 28 H 1.09003 * 109.47531 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47265 * 239.99392 * 2 1 3 30 30 H 1.09006 * 109.46821 * 119.99896 * 2 1 3 31 31 H 1.09000 * 109.47301 * 60.00439 * 4 3 2 32 32 H 1.08997 * 109.47239 * 299.99703 * 4 3 2 33 33 H 1.08994 * 109.47287 * 59.99958 * 5 4 3 34 34 H 1.09005 * 109.47160 * 299.99560 * 5 4 3 35 35 H 1.08994 * 109.47317 * 59.99842 * 6 5 4 36 36 H 1.08997 * 109.47023 * 299.99696 * 6 5 4 37 37 H 1.08994 * 109.47287 * 59.99824 * 7 6 5 38 38 H 1.08997 * 109.47057 * 299.99675 * 7 6 5 39 39 H 0.97002 * 120.00149 * 0.02562 * 8 7 6 40 40 H 1.09000 * 109.47297 * 60.00731 * 11 9 8 41 41 H 1.08997 * 109.47185 * 300.00030 * 11 9 8 42 42 H 1.07994 * 119.87429 * 0.02562 * 13 12 11 43 43 H 1.08002 * 119.74758 * 179.69746 * 14 13 12 44 44 H 1.07998 * 119.87893 * 180.02562 * 15 14 13 45 45 H 1.07997 * 120.12664 * 180.02562 * 16 15 14 46 46 H 0.97002 * 120.00001 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3507 3.0590 0.0012 7 6 5.7452 4.5373 0.0011 8 7 7.2056 4.6530 0.0017 9 6 7.7853 5.8697 0.0012 10 8 7.0978 6.8688 0.0008 11 6 9.2875 5.9886 0.0013 12 6 9.6761 7.4447 0.0013 13 6 9.9484 8.0872 -1.1851 14 6 10.3126 9.4245 -1.1873 15 6 10.4002 10.1321 0.0019 16 6 10.1262 9.5119 1.1993 17 6 9.7557 8.1543 1.2136 18 6 9.4714 7.5067 2.4380 19 1 9.6018 6.4382 2.5267 20 6 9.0208 8.2501 3.5347 21 7 8.5599 9.4617 3.3587 22 14 9.0777 7.5124 5.2500 23 1 7.7628 6.9011 5.5698 24 1 10.1346 6.4706 5.3059 25 1 9.3812 8.5790 6.2377 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5140 -0.8900 30 1 1.8932 -0.5139 0.8901 31 1 3.8340 0.9764 -0.8892 32 1 3.8333 0.9766 0.8908 33 1 3.4223 3.4215 0.8911 34 1 3.4230 3.4221 -0.8889 35 1 5.7534 2.5759 -0.8890 36 1 5.7534 2.5752 0.8909 37 1 5.3424 5.0209 0.8910 38 1 5.3424 5.0208 -0.8889 39 1 7.7554 3.8538 0.0017 40 1 9.6903 5.5048 -0.8885 41 1 9.6902 5.5054 0.8914 42 1 9.8828 7.5459 -2.1173 43 1 10.5293 9.9194 -2.1225 44 1 10.6845 11.1739 -0.0116 45 1 10.1946 10.0650 2.1243 46 1 8.2479 9.9771 4.1189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776831451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:27 Heat of formation + Delta-G solvation = -110.469074 kcal Electronic energy + Delta-G solvation = -24011.775200 eV Core-core repulsion = 20478.291322 eV Total energy + Delta-G solvation = -3533.483878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71165 -39.23071 -39.01989 -36.77349 -35.46244 -34.33253 -33.37488 -31.97761 -31.32814 -29.44100 -27.91576 -26.76437 -24.11680 -23.67069 -22.81424 -22.30449 -21.96810 -20.78811 -19.06393 -17.84808 -17.45052 -17.41754 -17.28810 -16.91031 -16.58235 -16.15473 -15.86973 -15.44744 -15.20500 -15.09774 -14.47722 -14.41889 -14.33590 -13.66259 -13.47537 -13.28104 -13.26512 -13.14034 -12.93448 -12.74933 -12.66012 -12.58277 -12.46530 -12.23710 -12.21252 -12.09581 -11.82528 -11.63150 -11.30587 -11.16044 -11.00188 -10.70252 -10.53386 -9.96002 -9.20877 -9.15658 -8.55930 -6.25017 1.01380 1.14635 1.35999 1.48969 1.54837 1.93145 2.21253 2.35805 2.79215 2.85408 3.77025 3.86213 3.94164 4.16368 4.17332 4.23064 4.31071 4.32779 4.42005 4.45850 4.49389 4.51274 4.61256 4.63792 4.71714 4.76412 4.81428 4.81839 4.88918 4.97987 5.02565 5.06461 5.25129 5.25678 5.26754 5.31505 5.38075 5.56777 5.62452 5.80857 6.05882 6.15998 6.23342 6.30527 6.45271 6.73639 6.80462 7.00925 7.14091 7.55630 8.41828 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.002709 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.730807 B =10333.601229 C =11656.060981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.419 6.419 4 C 0.064 3.936 5 C -0.115 4.115 6 C -0.109 4.109 7 C 0.120 3.880 8 N -0.725 5.725 9 C 0.513 3.487 10 O -0.577 6.577 11 C -0.067 4.067 12 C -0.187 4.187 13 C -0.092 4.092 14 C -0.245 4.245 15 C -0.117 4.117 16 C -0.196 4.196 17 C 0.095 3.905 18 C -0.483 4.483 19 H 0.084 0.916 20 C 0.028 3.972 21 N -0.833 5.833 22 Si 0.976 3.024 23 H -0.270 1.270 24 H -0.247 1.247 25 H -0.270 1.270 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.051 0.949 39 H 0.416 0.584 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -20.969 -4.794 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.339 6.339 4 C -0.012 4.012 5 C -0.153 4.153 6 C -0.147 4.147 7 C -0.004 4.004 8 N -0.380 5.380 9 C 0.301 3.699 10 O -0.456 6.456 11 C -0.107 4.107 12 C -0.189 4.189 13 C -0.110 4.110 14 C -0.264 4.264 15 C -0.136 4.136 16 C -0.215 4.215 17 C 0.093 3.907 18 C -0.513 4.513 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.460 5.460 22 Si 0.797 3.203 23 H -0.195 1.195 24 H -0.170 1.170 25 H -0.195 1.195 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.253 0.747 40 H 0.134 0.866 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.296 -19.908 -4.673 22.068 hybrid contribution 0.091 0.098 0.898 0.908 sum -8.205 -19.811 -3.775 21.772 Atomic orbital electron populations 1.21784 0.93311 1.03340 1.02508 1.22648 0.96134 0.82890 1.00971 1.87859 1.22302 1.28138 1.95643 1.22530 0.80566 0.96767 1.01350 1.21371 0.95129 0.95809 1.03010 1.21553 0.95143 0.93400 1.04587 1.21244 0.80432 0.98073 1.00631 1.45863 1.07532 1.08054 1.76503 1.21211 0.91580 0.82776 0.74353 1.90693 1.66280 1.38714 1.49864 1.20303 0.90494 0.95107 1.04789 1.19519 1.10444 0.96102 0.92853 1.20744 0.98944 0.94787 0.96524 1.20715 1.13270 0.95523 0.96910 1.20945 1.00659 0.98464 0.93496 1.21293 1.06546 0.97029 0.96667 1.17772 0.87853 0.92120 0.92995 1.19723 1.40368 0.95712 0.95509 0.89827 1.26805 0.91821 0.94845 1.05111 1.69945 1.30074 1.11975 1.34006 0.85292 0.79562 0.79210 0.76242 1.19546 1.17013 1.19510 0.92617 0.92451 0.89079 0.92318 0.92564 0.91791 0.92253 0.92098 0.91473 0.88896 0.89680 0.94291 0.93038 0.74720 0.86579 0.88108 0.86459 0.86761 0.87842 0.88688 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.42 -8.22 10.34 -148.98 -1.54 -9.77 16 4 C 0.06 0.98 5.94 71.98 0.43 1.41 16 5 C -0.11 -2.04 5.58 30.60 0.17 -1.87 16 6 C -0.11 -1.77 5.33 30.60 0.16 -1.61 16 7 C 0.12 3.19 5.67 86.38 0.49 3.68 16 8 N -0.72 -20.36 5.56 -463.07 -2.57 -22.93 16 9 C 0.51 20.51 7.82 87.65 0.69 21.20 16 10 O -0.58 -30.47 16.03 -3.04 -0.05 -30.52 16 11 C -0.07 -2.53 5.35 29.10 0.16 -2.38 16 12 C -0.19 -9.08 4.43 -19.40 -0.09 -9.16 16 13 C -0.09 -4.19 9.66 22.22 0.21 -3.97 16 14 C -0.25 -11.38 10.05 22.46 0.23 -11.15 16 15 C -0.12 -5.92 10.02 22.22 0.22 -5.69 16 16 C -0.20 -11.05 8.68 22.73 0.20 -10.85 16 17 C 0.09 5.27 5.56 -21.29 -0.12 5.15 16 18 C -0.48 -26.22 8.46 23.46 0.20 -26.02 16 19 H 0.08 4.18 6.36 -2.91 -0.02 4.16 16 20 C 0.03 1.46 5.16 85.26 0.44 1.90 16 21 N -0.83 -47.27 10.98 21.83 0.24 -47.03 16 22 Si 0.98 39.75 29.59 68.60 2.03 41.78 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 25 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.42 7.96 8.47 -92.71 -0.79 7.18 16 40 H 0.12 3.31 8.06 -2.39 -0.02 3.30 16 41 H 0.10 3.58 6.48 -2.39 -0.02 3.57 16 42 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 43 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 44 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 45 H 0.10 5.62 6.23 -2.91 -0.02 5.60 16 46 H 0.28 14.61 8.30 -92.71 -0.77 13.84 16 Total: -1.00 -75.81 382.41 2.89 -72.93 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.17 Total: 34.82 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 4.61 Total: -39.29 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -2.33 Total: -69.96 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.59 Total: -40.28 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -75.81 2.89 -72.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776831451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.542 kcal (2) G-P(sol) polarization free energy of solvation -75.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds