Wall clock time and date at job start Tue Mar 31 2020 09:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47083 * 2 1 4 4 C 1.35980 * 117.00183 * 179.97438 * 3 2 1 5 5 C 1.38729 * 119.99934 * 359.71985 * 4 3 2 6 6 C 1.38106 * 119.99819 * 179.71982 * 5 4 3 7 7 C 1.38718 * 120.00252 * 0.55732 * 6 5 4 8 8 O 1.35980 * 119.99967 * 179.73688 * 7 6 5 9 9 C 1.38682 * 119.99821 * 359.72131 * 7 6 5 10 10 C 1.50697 * 119.99647 * 179.97438 * 9 7 6 11 11 N 1.46900 * 109.47317 * 74.33252 * 10 9 7 12 12 C 1.46850 * 110.99716 * 51.82094 * 11 10 9 13 13 C 1.53044 * 109.51915 * 185.84014 * 12 11 10 14 14 C 1.53117 * 109.28163 * 300.82090 * 13 12 11 15 15 C 1.50694 * 109.57710 * 177.59172 * 14 13 12 16 16 H 1.07998 * 120.00290 * 240.28887 * 15 14 13 17 17 C 1.37882 * 119.99695 * 60.28407 * 15 14 13 18 18 N 1.31506 * 120.00053 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99658 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47537 * 120.00159 * 19 17 15 22 22 H 1.48509 * 109.47079 * 240.00168 * 19 17 15 23 23 C 1.53119 * 109.15625 * 57.65373 * 14 13 12 24 24 C 1.46841 * 111.00481 * 176.03281 * 11 10 9 25 25 C 1.38149 * 119.99752 * 359.97438 * 9 7 6 26 26 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47435 * 300.00350 * 1 2 3 28 28 H 1.08995 * 109.46637 * 60.00666 * 1 2 3 29 29 H 1.08994 * 109.47435 * 239.99650 * 2 1 3 30 30 H 1.09001 * 109.46575 * 119.99737 * 2 1 3 31 31 H 1.07995 * 119.99405 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.99897 * 180.27437 * 6 5 4 33 33 H 0.96697 * 114.00547 * 274.98978 * 8 7 6 34 34 H 1.09003 * 109.46985 * 194.33282 * 10 9 7 35 35 H 1.09001 * 109.47439 * 314.33071 * 10 9 7 36 36 H 1.09000 * 109.46261 * 305.85669 * 12 11 10 37 37 H 1.09000 * 109.46380 * 65.82892 * 12 11 10 38 38 H 1.09003 * 109.50234 * 180.88051 * 13 12 11 39 39 H 1.09007 * 109.53247 * 60.78369 * 13 12 11 40 40 H 1.08999 * 109.52081 * 297.75448 * 14 13 12 41 41 H 0.97003 * 119.99765 * 179.97438 * 18 17 15 42 42 H 1.09008 * 109.50097 * 182.40194 * 23 14 13 43 43 H 1.08996 * 109.53457 * 62.31215 * 23 14 13 44 44 H 1.09008 * 109.46013 * 294.18003 * 24 11 10 45 45 H 1.09003 * 109.45988 * 54.14924 * 24 11 10 46 46 H 1.08005 * 119.99255 * 179.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1995 0.4253 0.0069 6 6 5.5686 0.6063 0.0016 7 6 6.0989 1.8882 0.0016 8 8 7.4470 2.0663 0.0018 9 6 5.2541 2.9880 0.0011 10 6 5.8301 4.3805 0.0016 11 7 6.3639 4.6901 -1.3315 12 6 5.3618 4.4303 -2.3730 13 6 5.9960 4.6234 -3.7524 14 6 6.5226 6.0563 -3.8706 15 6 7.2011 6.2365 -5.2041 16 1 8.2451 6.5093 -5.2463 17 6 6.4888 6.0528 -6.3703 18 7 5.2173 5.7210 -6.3190 19 14 7.3300 6.2755 -8.0233 20 1 8.7518 6.6467 -7.8091 21 1 7.2595 5.0055 -8.7897 22 1 6.6472 7.3519 -8.7852 23 6 7.5281 6.3165 -2.7456 24 6 6.8496 6.0744 -1.3954 25 6 3.8845 2.8069 0.0000 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7867 -0.5726 0.0119 32 1 6.2266 -0.2502 0.0021 33 1 7.8469 2.0417 0.8818 34 1 5.0487 5.0968 0.2555 35 1 6.6321 4.4417 0.7373 36 1 4.9986 3.4068 -2.2802 37 1 4.5285 5.1232 -2.2562 38 1 5.2479 4.4457 -4.5250 39 1 6.8206 3.9212 -3.8759 40 1 5.6924 6.7576 -3.7866 41 1 4.7162 5.5922 -7.1395 42 1 7.8747 7.3487 -2.7988 43 1 8.3773 5.6416 -2.8524 44 1 6.0093 6.7597 -1.2831 45 1 7.5670 6.2450 -0.5927 46 1 3.2266 3.6634 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781928279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:23 Heat of formation + Delta-G solvation = -60.610224 kcal Electronic energy + Delta-G solvation = -25488.150160 eV Core-core repulsion = 21956.828324 eV Total energy + Delta-G solvation = -3531.321836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44588 -38.83348 -37.74832 -35.85966 -34.05678 -32.05607 -31.98029 -30.35042 -29.64495 -28.59340 -26.51803 -24.64347 -23.49940 -22.58054 -21.98677 -21.52480 -20.47937 -18.48283 -18.11646 -17.84569 -16.40850 -16.27647 -16.22687 -15.42600 -14.99607 -14.65040 -14.37528 -14.23392 -13.70102 -13.53865 -13.40870 -13.06493 -12.95647 -12.82554 -12.45969 -12.33584 -12.24728 -11.83919 -11.79139 -11.40322 -11.34175 -11.28942 -10.90027 -10.70868 -10.63832 -10.39945 -10.19189 -10.10469 -9.86776 -9.32853 -8.96154 -8.80455 -8.57441 -8.21149 -7.97974 -7.58449 -5.89085 -3.93989 1.24343 1.35898 3.06347 3.35636 3.43380 3.47859 3.59694 4.36253 4.51902 4.61343 4.67677 4.68874 4.75533 4.88880 4.97060 5.10673 5.20385 5.40976 5.44025 5.50417 5.53238 5.64462 5.75352 5.80958 5.85296 5.95491 5.99891 6.12334 6.24216 6.26977 6.32915 6.43815 6.52598 6.65308 6.73396 6.75360 6.96307 7.18568 7.28466 7.31732 7.55825 7.72853 7.79836 7.88582 7.93607 8.15831 8.26507 8.57878 9.09971 9.69877 11.17110 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.003648 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.998922 B = 7674.611638 C = 8684.097312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.119 3.881 5 C -0.197 4.197 6 C -0.112 4.112 7 C 0.093 3.907 8 O -0.476 6.476 9 C -0.057 4.057 10 C 0.100 3.900 11 N -0.519 5.519 12 C 0.059 3.941 13 C -0.102 4.102 14 C 0.048 3.952 15 C -0.508 4.508 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.105 4.105 24 C 0.061 3.939 25 C -0.131 4.131 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.377 0.623 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.019 0.981 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.022 0.978 45 H 0.057 0.943 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -11.513 17.658 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.230 6.230 4 C 0.074 3.926 5 C -0.216 4.216 6 C -0.131 4.131 7 C 0.048 3.952 8 O -0.284 6.284 9 C -0.058 4.058 10 C -0.028 4.028 11 N -0.244 5.244 12 C -0.069 4.069 13 C -0.140 4.140 14 C 0.029 3.971 15 C -0.546 4.546 16 H 0.073 0.927 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.143 4.143 24 C -0.066 4.066 25 C -0.150 4.150 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.231 0.769 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.040 0.960 45 H 0.075 0.925 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.139 -11.654 16.829 21.105 hybrid contribution -0.207 0.226 -0.356 0.470 sum -5.345 -11.428 16.472 20.748 Atomic orbital electron populations 1.21774 0.92813 1.02731 1.03627 1.22756 0.95844 0.82182 1.01278 1.86089 1.19022 1.29047 1.88881 1.18860 0.82223 0.93902 0.97604 1.21035 0.93735 0.97948 1.08851 1.21218 0.94736 0.96946 1.00201 1.18094 0.83584 0.90946 1.02581 1.85045 1.16296 1.94679 1.32381 1.19927 0.91970 0.95863 0.98034 1.20886 0.97630 0.90793 0.93472 1.62096 1.37356 1.23718 1.01259 1.22283 0.92215 0.98769 0.93598 1.21632 1.00594 0.99268 0.92534 1.18685 0.93424 0.92950 0.92013 1.21257 0.96594 1.46025 0.90721 0.92735 1.24972 0.94828 0.95312 0.98974 1.69897 1.07612 1.48354 1.27272 0.86593 0.79749 0.77601 0.84378 1.19841 1.21125 1.21203 1.21663 0.99700 0.99526 0.93418 1.22114 0.97819 0.87356 0.99332 1.20234 0.94147 0.95055 1.05585 0.90479 0.91588 0.91353 0.92002 0.92235 0.85482 0.85332 0.76875 0.94791 0.90345 0.92540 0.96321 0.89184 0.93889 0.96264 0.93250 0.93266 0.92413 0.95956 0.92475 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.49 5.46 37.16 0.20 0.69 16 3 O -0.32 -4.03 10.14 -19.68 -0.20 -4.23 16 4 C 0.12 1.61 6.69 -39.24 -0.26 1.35 16 5 C -0.20 -2.36 9.03 -39.45 -0.36 -2.71 16 6 C -0.11 -1.40 9.98 -39.45 -0.39 -1.79 16 7 C 0.09 1.32 6.68 -39.24 -0.26 1.06 16 8 O -0.48 -6.50 12.84 -19.68 -0.25 -6.76 16 9 C -0.06 -0.84 3.75 -104.49 -0.39 -1.23 16 10 C 0.10 1.53 4.86 -4.98 -0.02 1.50 16 11 N -0.52 -9.84 4.76 -236.11 -1.12 -10.96 16 12 C 0.06 1.25 5.07 -3.83 -0.02 1.23 16 13 C -0.10 -2.57 5.12 -26.65 -0.14 -2.71 16 14 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 15 C -0.51 -14.44 8.56 -34.44 -0.29 -14.73 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 18 N -0.89 -26.24 11.37 55.43 0.63 -25.61 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 24 C 0.06 1.15 5.46 -3.84 -0.02 1.13 16 25 C -0.13 -1.89 8.95 -39.45 -0.35 -2.25 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.52 7.67 -51.93 -0.40 0.13 16 30 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 31 H 0.13 1.19 6.29 -52.49 -0.33 0.86 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.38 3.12 9.06 45.56 0.41 3.53 16 34 H 0.03 0.50 7.94 -51.93 -0.41 0.09 16 35 H 0.08 1.06 8.02 -51.93 -0.42 0.64 16 36 H 0.06 1.19 6.25 -51.93 -0.32 0.87 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 2.51 6.18 -51.93 -0.32 2.19 16 39 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 45 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 46 H 0.13 1.84 8.00 -52.48 -0.42 1.42 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -32.33 365.24 -9.62 -41.96 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.80 Total: 2.18 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.37 Total: -18.97 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.49 Total: -36.57 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.45 Total: -10.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.33 -9.62 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781928279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.653 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds