Wall clock time and date at job start Tue Mar 31 2020 10:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46902 * 110.99568 * 2 1 4 4 C 1.46895 * 110.99875 * 123.95305 * 2 1 3 5 5 C 1.53005 * 109.47052 * 66.04683 * 4 2 1 6 6 C 1.53002 * 109.46946 * 179.97438 * 5 4 2 7 7 O 1.45201 * 109.46637 * 180.02562 * 6 5 4 8 8 C 1.34234 * 116.99588 * 179.97438 * 7 6 5 9 9 O 1.20824 * 119.99958 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99948 * 179.97438 * 8 7 6 11 11 C 1.52994 * 109.46995 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47363 * 54.05802 * 11 10 8 13 13 C 1.50705 * 109.47281 * 294.05789 * 11 10 8 14 14 H 1.07996 * 119.99568 * 330.07534 * 13 11 10 15 15 C 1.37877 * 119.99831 * 150.08226 * 13 11 10 16 16 N 1.31508 * 120.00174 * 6.54999 * 15 13 11 17 17 Si 1.86806 * 119.99365 * 186.55534 * 15 13 11 18 18 H 1.48503 * 109.46588 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.46990 * 299.99410 * 17 15 13 20 20 H 1.48496 * 109.47189 * 59.99915 * 17 15 13 21 21 C 1.50704 * 109.47072 * 174.05777 * 11 10 8 22 22 C 1.38238 * 119.99714 * 64.29653 * 21 11 10 23 23 C 1.38234 * 119.99537 * 179.80946 * 22 21 11 24 24 C 1.38238 * 120.00115 * 0.39931 * 23 22 21 25 25 C 1.38237 * 119.99909 * 359.86107 * 24 23 22 26 26 C 1.38229 * 119.99861 * 359.94762 * 25 24 23 27 27 H 1.08998 * 109.46901 * 296.04358 * 1 2 3 28 28 H 1.09002 * 109.46959 * 56.04422 * 1 2 3 29 29 H 1.08991 * 109.46886 * 176.04940 * 1 2 3 30 30 H 1.09002 * 109.46330 * 183.95457 * 3 2 1 31 31 H 1.08990 * 109.47289 * 303.95339 * 3 2 1 32 32 H 1.08999 * 109.47020 * 63.95839 * 3 2 1 33 33 H 1.08997 * 109.47883 * 306.04631 * 4 2 1 34 34 H 1.09002 * 109.46988 * 186.04314 * 4 2 1 35 35 H 1.08999 * 109.47044 * 60.00036 * 5 4 2 36 36 H 1.08992 * 109.46900 * 299.99588 * 5 4 2 37 37 H 1.08997 * 109.47399 * 59.99738 * 6 5 4 38 38 H 1.09002 * 109.47136 * 299.99657 * 6 5 4 39 39 H 1.08999 * 109.46642 * 59.99918 * 10 8 7 40 40 H 1.09002 * 109.46876 * 299.99811 * 10 8 7 41 41 H 0.96995 * 120.00004 * 354.73307 * 16 15 13 42 42 H 1.08000 * 120.00129 * 0.02562 * 22 21 11 43 43 H 1.08004 * 120.00058 * 180.23627 * 23 22 21 44 44 H 1.08006 * 119.99774 * 179.82823 * 24 23 22 45 45 H 1.07995 * 119.99599 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99707 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1803 -3.0405 2.1548 7 8 1.8354 -4.4419 1.9957 8 6 2.2465 -5.2836 2.9572 9 8 2.8743 -4.8633 3.9001 10 6 1.9252 -6.7528 2.8604 11 6 2.5048 -7.4825 4.0738 12 1 2.1504 -7.0061 4.9878 13 6 4.0098 -7.4201 4.0259 14 1 4.5182 -7.3738 3.0742 15 6 4.7375 -7.4224 5.1970 16 7 4.1299 -7.6085 6.3484 17 14 6.5865 -7.1611 5.1480 18 1 7.1296 -7.2070 6.5295 19 1 7.2161 -8.2305 4.3324 20 1 6.8836 -5.8377 4.5436 21 6 2.0608 -8.9226 4.0532 22 6 2.4690 -9.7571 3.0296 23 6 2.0650 -11.0789 3.0128 24 6 1.2461 -11.5642 4.0153 25 6 0.8335 -10.7282 5.0360 26 6 1.2408 -9.4074 5.0549 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5612 -0.3873 2.0628 34 1 3.0798 -0.6611 1.1756 35 1 2.0658 -2.6213 0.0451 36 1 0.5473 -2.3475 0.9323 37 1 1.7464 -2.6619 3.0803 38 1 3.2646 -2.9356 2.1924 39 1 2.3617 -7.1608 1.9488 40 1 0.8438 -6.8874 2.8375 41 1 3.1623 -7.6677 6.3821 42 1 3.1064 -9.3772 2.2448 43 1 2.3870 -11.7320 2.2152 44 1 0.9281 -12.5963 4.0007 45 1 0.1934 -11.1072 5.8189 46 1 0.9188 -8.7544 5.8526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792272544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:33 Heat of formation + Delta-G solvation = -71.139173 kcal Electronic energy + Delta-G solvation = -24549.874104 eV Core-core repulsion = 21018.095699 eV Total energy + Delta-G solvation = -3531.778406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.82886 -38.52338 -37.95764 -36.06740 -34.30250 -32.57986 -31.40558 -30.13883 -29.15477 -27.88960 -26.76652 -25.15687 -23.24716 -22.57004 -21.71619 -21.02713 -20.60480 -19.54230 -17.09849 -16.85328 -16.40308 -16.09851 -15.82857 -15.51118 -15.07647 -14.91775 -14.45756 -14.18684 -14.01846 -13.68897 -13.17463 -12.83697 -12.71708 -12.61785 -12.45408 -12.39377 -12.07010 -12.03656 -11.88926 -11.66788 -11.53100 -11.29537 -11.08638 -10.88906 -10.74593 -10.46898 -10.20236 -10.10023 -10.07739 -9.73388 -9.57913 -8.71372 -8.67519 -8.34922 -8.16323 -7.68691 -6.30346 -3.99506 2.16608 2.20831 3.06681 3.12336 3.46840 3.51725 3.67430 3.76503 4.56344 4.62833 4.70713 4.83602 4.89494 5.08447 5.10542 5.22135 5.29147 5.34798 5.39836 5.45852 5.54384 5.56705 5.57876 5.60650 5.62959 5.73458 5.75845 5.93789 5.98211 6.00792 6.08266 6.14097 6.28626 6.37048 6.57872 6.70297 6.71297 6.74856 6.87285 7.08109 7.12258 7.19967 7.34416 7.65405 7.82034 8.13332 8.43205 8.61161 8.90183 9.70560 11.09870 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014565 B = 0.003183 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.980527 B = 8795.383782 C =10154.897650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.056 3.944 5 C -0.115 4.115 6 C 0.068 3.932 7 O -0.373 6.373 8 C 0.457 3.543 9 O -0.471 6.471 10 C -0.090 4.090 11 C 0.069 3.931 12 H 0.052 0.948 13 C -0.577 4.577 14 H 0.048 0.952 15 C 0.034 3.966 16 N -0.903 5.903 17 Si 1.063 2.937 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.288 1.288 21 C -0.032 4.032 22 C -0.107 4.107 23 C -0.129 4.129 24 C -0.151 4.151 25 C -0.124 4.124 26 C -0.129 4.129 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.270 0.730 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 8.875 -10.838 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.072 4.072 5 C -0.153 4.153 6 C -0.007 4.007 7 O -0.291 6.291 8 C 0.298 3.702 9 O -0.354 6.354 10 C -0.127 4.127 11 C 0.050 3.950 12 H 0.071 0.929 13 C -0.614 4.614 14 H 0.066 0.934 15 C -0.172 4.172 16 N -0.538 5.538 17 Si 0.892 3.108 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.215 1.215 21 C -0.033 4.033 22 C -0.125 4.125 23 C -0.147 4.147 24 C -0.169 4.169 25 C -0.142 4.142 26 C -0.147 4.147 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.230 8.861 -10.002 14.743 hybrid contribution -1.451 0.416 -0.072 1.511 sum -7.681 9.277 -10.074 15.701 Atomic orbital electron populations 1.22474 0.87302 1.02731 1.00411 1.61938 1.08193 1.13823 1.43177 1.22387 1.00936 0.88615 1.00478 1.22025 1.00662 0.93061 0.91411 1.21509 1.02065 0.93045 0.98637 1.22763 1.00583 0.78914 0.98420 1.86494 1.73499 1.19066 1.50089 1.23928 0.76722 0.89662 0.79845 1.90705 1.34666 1.77786 1.32269 1.21493 1.01109 0.86737 1.03408 1.17940 0.97239 0.86732 0.93125 0.92945 1.21577 0.89248 1.55647 0.94931 0.93392 1.25617 1.06438 0.92847 0.92331 1.70764 1.11774 1.44222 1.27017 0.83637 0.74897 0.76390 0.75913 1.20851 1.21583 1.21490 1.20707 0.91172 0.98936 0.92478 1.20933 0.99285 0.93042 0.99226 1.21020 0.99094 0.95839 0.98738 1.20843 1.00987 0.98860 0.96227 1.20962 1.00783 0.94235 0.98258 1.21054 0.98948 0.95474 0.99206 0.95591 0.91417 0.90786 0.91202 0.91307 0.95628 0.94402 0.90242 0.89956 0.90949 0.91901 0.91427 0.89070 0.90435 0.91826 0.86604 0.87341 0.87511 0.87392 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.07 0.56 0.72 16 2 N -0.55 -5.25 5.02 -251.26 -1.26 -6.51 16 3 C 0.02 0.19 9.57 60.07 0.57 0.76 16 4 C 0.06 0.57 4.96 -3.82 -0.02 0.55 16 5 C -0.11 -1.31 5.52 -26.73 -0.15 -1.45 16 6 C 0.07 1.00 5.47 37.16 0.20 1.20 16 7 O -0.37 -6.56 10.22 -39.27 -0.40 -6.96 16 8 C 0.46 9.52 7.71 36.01 0.28 9.80 16 9 O -0.47 -11.61 14.77 -18.75 -0.28 -11.89 16 10 C -0.09 -1.78 5.05 -27.88 -0.14 -1.92 16 11 C 0.07 1.62 1.31 -92.92 -0.12 1.50 16 12 H 0.05 1.38 6.23 -51.93 -0.32 1.06 16 13 C -0.58 -15.51 6.41 -34.44 -0.22 -15.73 16 14 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 15 C 0.03 0.96 5.45 -17.82 -0.10 0.86 16 16 N -0.90 -27.18 13.63 55.43 0.76 -26.42 16 17 Si 1.06 25.91 29.91 -169.99 -5.08 20.82 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.03 -0.71 4.77 -104.62 -0.50 -1.21 16 22 C -0.11 -2.16 8.88 -39.58 -0.35 -2.51 16 23 C -0.13 -2.30 10.05 -39.58 -0.40 -2.69 16 24 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 25 C -0.12 -2.25 10.05 -39.59 -0.40 -2.65 16 26 C -0.13 -2.65 9.67 -39.59 -0.38 -3.04 16 27 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.07 0.61 6.47 -51.93 -0.34 0.28 16 30 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.79 6.55 -51.93 -0.34 0.45 16 37 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 38 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 39 H 0.09 1.70 7.87 -51.93 -0.41 1.29 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.27 8.03 6.68 -40.82 -0.27 7.75 16 42 H 0.12 2.28 7.80 -52.49 -0.41 1.87 16 43 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 45 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.11 2.24 7.95 -52.49 -0.42 1.82 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -32.06 380.02 -9.72 -41.79 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.62 Total: 2.25 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.56 Total: -18.81 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: -0.51 Total: -32.93 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.68 Total: -18.84 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.06 -9.72 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792272544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.352 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds