Wall clock time and date at job start Tue Mar 31 2020 10:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 O 1.45200 * 109.46848 * 65.00290 * 4 3 2 6 6 C 1.34230 * 116.99996 * 180.02562 * 5 4 3 7 7 O 1.20829 * 119.99834 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00052 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46957 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.46791 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47082 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47247 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99939 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99682 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00091 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99434 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47321 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47138 * 119.99980 * 16 14 12 19 19 H 1.48499 * 109.46870 * 239.99356 * 16 14 12 20 20 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 21 21 C 1.38914 * 120.07317 * 359.97438 * 20 2 1 22 22 C 1.38100 * 119.92419 * 179.97438 * 21 20 2 23 23 C 1.38288 * 120.07489 * 359.97438 * 22 21 20 24 24 C 1.38283 * 120.14964 * 0.27921 * 23 22 21 25 25 C 1.38104 * 120.07445 * 359.44998 * 24 23 22 26 26 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 27 27 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 28 28 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 29 29 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 30 30 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 31 31 H 1.08997 * 109.46830 * 185.00168 * 4 3 2 32 32 H 1.08998 * 109.47240 * 305.00434 * 4 3 2 33 33 H 1.09001 * 109.46984 * 299.99230 * 8 6 5 34 34 H 1.08998 * 109.47264 * 59.99271 * 8 6 5 35 35 H 1.09001 * 109.47001 * 299.99656 * 9 8 6 36 36 H 1.09003 * 109.46701 * 59.99530 * 9 8 6 37 37 H 1.09001 * 109.47510 * 299.99887 * 10 9 8 38 38 H 1.09007 * 109.47079 * 60.00209 * 10 9 8 39 39 H 1.09001 * 109.46680 * 300.00180 * 11 10 9 40 40 H 1.08994 * 109.46966 * 59.99949 * 11 10 9 41 41 H 0.97002 * 119.99247 * 180.02562 * 15 14 12 42 42 H 1.07999 * 120.03435 * 359.97438 * 21 20 2 43 43 H 1.08000 * 119.95830 * 180.02562 * 22 21 20 44 44 H 1.08002 * 119.92149 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.96059 * 179.69879 * 24 23 22 46 46 H 1.07999 * 120.04050 * 180.27354 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 8 1.1859 1.9982 -2.0916 6 6 1.2346 2.4009 -3.3712 7 8 2.3002 2.5099 -3.9301 8 6 -0.0399 2.7183 -4.1102 9 6 0.2936 3.1506 -5.5395 10 6 -1.0003 3.4722 -6.2900 11 6 -0.6669 3.9039 -7.7194 12 6 -1.9413 4.2213 -8.4585 13 1 -2.8938 4.1243 -7.9587 14 6 -1.8913 4.6344 -9.7730 15 7 -0.7315 4.7520 -10.3817 16 14 -3.4712 5.0271 -10.6892 17 1 -4.6319 4.8160 -9.7875 18 1 -3.4439 6.4421 -11.1390 19 1 -3.5934 4.1348 -11.8699 20 6 2.1634 -1.2096 -0.0005 21 6 1.4704 -2.4135 -0.0005 22 6 2.1641 -3.6077 -0.0016 23 6 3.5470 -3.6058 -0.0032 24 6 4.2399 -2.4092 0.0021 25 6 3.5525 -1.2114 -0.0025 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 3.0732 2.6065 -1.4437 32 1 2.9642 0.9132 -1.9816 33 1 -0.6745 1.8325 -4.1369 34 1 -0.5645 3.5259 -3.5997 35 1 0.9281 4.0365 -5.5124 36 1 0.8185 2.3432 -6.0502 37 1 -1.6345 2.5861 -6.3170 38 1 -1.5255 4.2795 -5.7793 39 1 -0.0325 4.7899 -7.6927 40 1 -0.1420 3.0964 -8.2297 41 1 -0.6964 5.0430 -11.3063 42 1 0.3904 -2.4156 0.0003 43 1 1.6259 -4.5440 -0.0020 44 1 4.0869 -4.5412 -0.0036 45 1 5.3199 -2.4113 0.0057 46 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:03 Heat of formation + Delta-G solvation = -75.038289 kcal Electronic energy + Delta-G solvation = -23794.263393 eV Core-core repulsion = 20262.315909 eV Total energy + Delta-G solvation = -3531.947484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53734 -39.77373 -37.23214 -36.06437 -34.97987 -32.70870 -31.80573 -30.82276 -29.95676 -29.51639 -26.45223 -25.66364 -23.74329 -22.66375 -22.27152 -20.85238 -20.57498 -20.03990 -18.10069 -17.35399 -16.95764 -16.31999 -16.15852 -15.92835 -15.74693 -14.94768 -14.76925 -14.63411 -14.42891 -14.02594 -13.81619 -13.31751 -13.11420 -12.85316 -12.81713 -12.56097 -12.40556 -12.16287 -11.94936 -11.72428 -11.65584 -11.64866 -11.05528 -11.03067 -10.75511 -10.60209 -10.55231 -10.47890 -10.39711 -10.11258 -9.66588 -9.29957 -9.15499 -9.01824 -8.32897 -7.57521 -5.97425 -3.99960 1.20823 1.37867 2.29475 2.59758 2.79847 3.32080 3.39376 3.43310 3.67080 4.45892 4.48557 4.53150 4.57370 4.72733 4.79213 4.90139 4.97203 5.02799 5.15240 5.21480 5.24242 5.24965 5.26012 5.32090 5.38171 5.44088 5.51599 5.58941 5.71744 5.78060 6.01379 6.04081 6.17909 6.26212 6.38695 6.41710 6.46230 6.62125 6.75271 6.93205 6.93608 7.14941 7.21731 7.71433 7.81905 7.85923 8.03431 8.45113 9.07812 9.63910 11.13931 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.001998 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.383138 B =14008.863202 C =14177.050705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.627 5.627 3 C 0.126 3.874 4 C 0.043 3.957 5 O -0.358 6.358 6 C 0.459 3.541 7 O -0.506 6.506 8 C -0.111 4.111 9 C -0.108 4.108 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.216 3.784 21 C -0.197 4.197 22 C -0.073 4.073 23 C -0.182 4.182 24 C -0.072 4.072 25 C -0.202 4.202 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -12.783 27.192 30.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.338 5.338 3 C 0.003 3.997 4 C -0.032 4.032 5 O -0.276 6.276 6 C 0.302 3.698 7 O -0.392 6.392 8 C -0.148 4.148 9 C -0.146 4.146 10 C -0.147 4.147 11 C -0.018 4.018 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.114 3.886 21 C -0.219 4.219 22 C -0.091 4.091 23 C -0.202 4.202 24 C -0.091 4.091 25 C -0.224 4.224 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.887 -12.536 26.890 30.457 hybrid contribution -0.597 0.255 -0.695 0.951 sum 6.291 -12.281 26.194 29.606 Atomic orbital electron populations 1.21692 0.78968 1.03478 1.00825 1.46406 1.05257 1.02338 1.79781 1.21546 0.98555 0.85758 0.93885 1.23613 0.84482 1.01290 0.93830 1.86504 1.35699 1.78007 1.27344 1.24213 0.92773 0.72962 0.79875 1.90675 1.32326 1.48403 1.67836 1.21597 0.92298 1.04102 0.96840 1.21573 1.00011 1.01992 0.91016 1.21647 0.94373 1.00002 0.98694 1.19105 0.96850 0.96591 0.89232 1.21307 0.93138 1.44734 0.96641 0.92636 1.25053 0.96061 0.95761 0.97775 1.69986 1.23929 1.47623 1.11902 0.86543 0.83749 0.77931 0.79806 1.19758 1.21048 1.21042 1.17887 0.91235 0.85828 0.93640 1.20709 0.99749 0.91127 1.10355 1.20908 0.94265 0.97215 0.96738 1.20911 0.94310 0.97841 1.07179 1.20893 0.99446 0.92019 0.96727 1.20686 0.92139 0.98691 1.10909 0.93568 0.90383 0.91482 0.89402 0.88457 0.90520 0.90957 0.88025 0.87961 0.91567 0.91597 0.93226 0.93214 0.96545 0.96545 0.93078 0.86000 0.86279 0.86581 0.86282 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.01 59.85 0.60 1.28 16 2 N -0.63 -5.35 2.97 -179.62 -0.53 -5.89 16 3 C 0.13 0.90 5.57 -4.04 -0.02 0.88 16 4 C 0.04 0.42 5.81 37.16 0.22 0.64 16 5 O -0.36 -4.19 9.03 -39.26 -0.35 -4.54 16 6 C 0.46 6.50 7.96 36.01 0.29 6.79 16 7 O -0.51 -8.86 15.73 -18.75 -0.29 -9.16 16 8 C -0.11 -1.47 5.81 -27.88 -0.16 -1.63 16 9 C -0.11 -1.88 4.50 -26.73 -0.12 -2.00 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 16 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.22 2.06 6.55 -83.79 -0.55 1.51 16 21 C -0.20 -1.81 9.21 -39.38 -0.36 -2.18 16 22 C -0.07 -0.62 10.04 -39.61 -0.40 -1.02 16 23 C -0.18 -1.55 10.04 -39.55 -0.40 -1.95 16 24 C -0.07 -0.62 10.04 -39.61 -0.40 -1.02 16 25 C -0.20 -1.83 9.21 -39.38 -0.36 -2.19 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.59 7.09 -51.93 -0.37 0.22 16 28 H 0.07 0.48 6.20 -51.93 -0.32 0.16 16 29 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 30 H 0.10 0.54 6.20 -51.92 -0.32 0.22 16 31 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.12 0.96 6.14 -52.49 -0.32 0.64 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.90 6.14 -52.49 -0.32 0.58 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -33.73 380.86 -9.62 -43.34 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.53 Total: -3.07 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.36 Total: -16.57 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 0.20 Total: -32.56 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.65 Total: -13.70 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.73 -9.62 -43.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.693 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds