Wall clock time and date at job start Tue Mar 31 2020 10:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 O 1.45200 * 109.46848 * 65.00290 * 4 3 2 6 6 C 1.34230 * 116.99996 * 180.02562 * 5 4 3 7 7 O 1.20829 * 119.99834 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00052 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46957 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.46791 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47082 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47247 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99939 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99682 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00091 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99434 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47321 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47138 * 119.99980 * 16 14 12 19 19 H 1.48499 * 109.46870 * 239.99356 * 16 14 12 20 20 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 21 21 C 1.38914 * 120.07317 * 359.97438 * 20 2 1 22 22 C 1.38100 * 119.92419 * 179.97438 * 21 20 2 23 23 C 1.38288 * 120.07489 * 359.97438 * 22 21 20 24 24 C 1.38283 * 120.14964 * 0.27921 * 23 22 21 25 25 C 1.38104 * 120.07445 * 359.44998 * 24 23 22 26 26 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 27 27 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 28 28 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 29 29 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 30 30 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 31 31 H 1.08997 * 109.46830 * 185.00168 * 4 3 2 32 32 H 1.08998 * 109.47240 * 305.00434 * 4 3 2 33 33 H 1.09001 * 109.46984 * 299.99230 * 8 6 5 34 34 H 1.08998 * 109.47264 * 59.99271 * 8 6 5 35 35 H 1.09001 * 109.47001 * 299.99656 * 9 8 6 36 36 H 1.09003 * 109.46701 * 59.99530 * 9 8 6 37 37 H 1.09001 * 109.47510 * 299.99887 * 10 9 8 38 38 H 1.09007 * 109.47079 * 60.00209 * 10 9 8 39 39 H 1.09001 * 109.46680 * 300.00180 * 11 10 9 40 40 H 1.08994 * 109.46966 * 59.99949 * 11 10 9 41 41 H 0.97002 * 119.99247 * 180.02562 * 15 14 12 42 42 H 1.07999 * 120.03435 * 359.97438 * 21 20 2 43 43 H 1.08000 * 119.95830 * 180.02562 * 22 21 20 44 44 H 1.08002 * 119.92149 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.96059 * 179.69879 * 24 23 22 46 46 H 1.07999 * 120.04050 * 180.27354 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 8 1.1859 1.9982 -2.0916 6 6 1.2346 2.4009 -3.3712 7 8 2.3002 2.5099 -3.9301 8 6 -0.0399 2.7183 -4.1102 9 6 0.2936 3.1506 -5.5395 10 6 -1.0003 3.4722 -6.2900 11 6 -0.6669 3.9039 -7.7194 12 6 -1.9413 4.2213 -8.4585 13 1 -2.8938 4.1243 -7.9587 14 6 -1.8913 4.6344 -9.7730 15 7 -0.7315 4.7520 -10.3817 16 14 -3.4712 5.0271 -10.6892 17 1 -4.6319 4.8160 -9.7875 18 1 -3.4439 6.4421 -11.1390 19 1 -3.5934 4.1348 -11.8699 20 6 2.1634 -1.2096 -0.0005 21 6 1.4704 -2.4135 -0.0005 22 6 2.1641 -3.6077 -0.0016 23 6 3.5470 -3.6058 -0.0032 24 6 4.2399 -2.4092 0.0021 25 6 3.5525 -1.2114 -0.0025 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5138 31 1 3.0732 2.6065 -1.4437 32 1 2.9642 0.9132 -1.9816 33 1 -0.6745 1.8325 -4.1369 34 1 -0.5645 3.5259 -3.5997 35 1 0.9281 4.0365 -5.5124 36 1 0.8185 2.3432 -6.0502 37 1 -1.6345 2.5861 -6.3170 38 1 -1.5255 4.2795 -5.7793 39 1 -0.0325 4.7899 -7.6927 40 1 -0.1420 3.0964 -8.2297 41 1 -0.6964 5.0430 -11.3063 42 1 0.3904 -2.4156 0.0003 43 1 1.6259 -4.5440 -0.0020 44 1 4.0869 -4.5412 -0.0036 45 1 5.3199 -2.4113 0.0057 46 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:02 Heat of formation + Delta-G solvation = -92.028544 kcal Electronic energy + Delta-G solvation = -23795.000146 eV Core-core repulsion = 20262.315909 eV Total energy + Delta-G solvation = -3532.684237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57716 -40.44586 -38.14297 -36.91788 -36.57960 -34.67170 -32.53036 -31.76714 -31.24670 -30.24493 -27.84446 -26.71252 -24.85055 -23.94676 -22.94184 -22.08893 -21.49765 -21.41629 -18.91222 -18.43155 -18.25865 -17.90018 -17.26357 -16.76856 -16.48395 -16.38158 -16.03931 -15.59246 -15.28707 -14.86978 -14.60457 -14.49109 -14.25760 -14.14281 -13.66155 -13.56773 -13.53731 -13.40697 -13.18738 -12.90624 -12.84910 -12.56696 -12.33285 -12.26762 -12.21383 -12.19731 -11.75787 -11.62247 -11.57251 -11.39954 -11.30069 -11.05863 -10.75351 -10.56003 -9.79921 -8.20711 -8.19303 -6.31075 0.56426 0.72763 1.18650 1.40650 1.41275 1.54785 1.65096 2.19268 2.41697 3.02207 3.13704 3.66374 3.89134 3.91682 3.94699 4.03160 4.07243 4.11686 4.27187 4.30249 4.40906 4.48241 4.60606 4.62773 4.63864 4.65502 4.70514 4.76703 4.84619 4.86017 4.90342 5.02433 5.12962 5.18659 5.26288 5.31362 5.38642 5.42862 5.56176 5.64040 5.76778 5.78174 5.87609 6.01227 6.24815 6.33703 6.58251 6.74413 6.87682 7.38565 8.93020 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.001998 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.383138 B =14008.863202 C =14177.050705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.633 5.633 3 C 0.131 3.869 4 C 0.041 3.959 5 O -0.348 6.348 6 C 0.463 3.537 7 O -0.547 6.547 8 C -0.101 4.101 9 C -0.100 4.100 10 C -0.095 4.095 11 C 0.018 3.982 12 C -0.540 4.540 13 H 0.067 0.933 14 C -0.008 4.008 15 N -0.938 5.938 16 Si 0.969 3.031 17 H -0.257 1.257 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.200 3.800 21 C -0.212 4.212 22 C -0.082 4.082 23 C -0.194 4.194 24 C -0.082 4.082 25 C -0.216 4.216 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.065 0.935 39 H -0.013 1.013 40 H -0.015 1.015 41 H 0.263 0.737 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.135 0.865 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.834 -13.037 28.848 32.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.343 5.343 3 C 0.007 3.993 4 C -0.034 4.034 5 O -0.265 6.265 6 C 0.308 3.692 7 O -0.437 6.437 8 C -0.138 4.138 9 C -0.138 4.138 10 C -0.133 4.133 11 C -0.020 4.020 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.793 3.207 17 H -0.181 1.181 18 H -0.205 1.205 19 H -0.206 1.206 20 C 0.099 3.901 21 C -0.234 4.234 22 C -0.100 4.100 23 C -0.214 4.214 24 C -0.101 4.101 25 C -0.238 4.238 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.005 0.995 40 H 0.004 0.996 41 H 0.071 0.929 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.120 -12.801 28.585 31.736 hybrid contribution 0.018 0.297 -1.183 1.220 sum 5.138 -12.504 27.402 30.555 Atomic orbital electron populations 1.21755 0.78429 1.03353 1.01574 1.46554 1.05748 1.02373 1.79636 1.21648 0.99800 0.85670 0.92146 1.23831 0.83674 1.01017 0.94871 1.86496 1.36724 1.77231 1.26007 1.24331 0.92348 0.72049 0.80466 1.90671 1.33824 1.50396 1.68858 1.21475 0.92297 1.06111 0.93963 1.21347 0.98089 1.00758 0.93621 1.21436 0.95906 1.00866 0.95085 1.19066 0.95549 0.94333 0.93007 1.21781 0.94162 1.44515 0.97304 0.91519 1.26094 0.99919 0.95502 0.99001 1.70136 1.26648 1.48614 1.12417 0.85336 0.79275 0.77714 0.78330 1.18077 1.20504 1.20560 1.18104 0.91663 0.86400 0.93981 1.20933 1.00372 0.91394 1.10730 1.21199 0.94610 0.97858 0.96378 1.21201 0.94592 0.98583 1.06994 1.21190 1.00478 0.92022 0.96412 1.20915 0.92297 0.99421 1.11142 0.92375 0.90418 0.91647 0.87646 0.86714 0.89911 0.92815 0.85608 0.85065 0.93128 0.93527 0.91918 0.91675 0.99484 0.99647 0.92874 0.85217 0.84628 0.85079 0.84690 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 10.01 127.77 1.28 2.45 16 2 N -0.63 -9.83 2.97 -722.18 -2.15 -11.98 16 3 C 0.13 1.63 5.57 86.38 0.48 2.11 16 4 C 0.04 0.76 5.81 71.98 0.42 1.18 16 5 O -0.35 -7.55 9.03 -51.42 -0.46 -8.02 16 6 C 0.46 12.63 7.96 71.24 0.57 13.20 16 7 O -0.55 -19.35 15.73 21.96 0.35 -19.01 16 8 C -0.10 -2.46 5.81 29.85 0.17 -2.29 16 9 C -0.10 -3.47 4.50 30.59 0.14 -3.33 16 10 C -0.10 -3.78 5.15 30.59 0.16 -3.62 16 11 C 0.02 0.95 4.97 29.85 0.15 1.10 16 12 C -0.54 -30.99 9.11 25.60 0.23 -30.75 16 13 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 14 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 15 N -0.94 -58.68 13.29 21.45 0.28 -58.39 16 16 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 C 0.20 3.65 6.55 38.21 0.25 3.90 16 21 C -0.21 -3.73 9.21 22.40 0.21 -3.52 16 22 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 23 C -0.19 -3.11 10.04 22.29 0.22 -2.89 16 24 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 25 C -0.22 -3.73 9.21 22.40 0.21 -3.52 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.08 1.00 7.09 -2.39 -0.02 0.98 16 28 H 0.06 0.85 6.20 -2.39 -0.01 0.83 16 29 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 30 H 0.12 1.04 6.20 -2.38 -0.01 1.03 16 31 H 0.08 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 33 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 36 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.13 1.94 6.14 -2.91 -0.02 1.92 16 43 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 44 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.13 1.83 6.14 -2.91 -0.02 1.81 16 Total: -1.00 -74.30 380.86 6.38 -67.92 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.94 Total: 11.09 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 5.39 Total: -28.24 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -1.86 Total: -70.38 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.12 Total: -27.02 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -74.30 6.38 -67.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.109 kcal (2) G-P(sol) polarization free energy of solvation -74.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds