Wall clock time and date at job start Tue Mar 31 2020 09:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.36007 * 116.99577 * 179.97438 * 3 2 1 5 5 C 1.38519 * 120.00475 * 359.73273 * 4 3 2 6 6 C 1.38461 * 120.33909 * 179.71781 * 5 4 3 7 7 C 1.37834 * 120.33567 * 0.55195 * 6 5 4 8 8 C 1.39765 * 119.99375 * 359.72340 * 7 6 5 9 9 C 1.47385 * 120.16650 * 179.97438 * 8 7 6 10 10 N 1.29429 * 120.00033 * 180.02562 * 9 8 7 11 11 C 1.46496 * 119.99990 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47345 * 115.00207 * 11 10 9 13 13 C 1.53001 * 109.46841 * 300.00338 * 12 11 10 14 14 C 1.52999 * 109.47131 * 59.99762 * 12 11 10 15 15 C 1.52995 * 109.47517 * 179.97438 * 12 11 10 16 16 C 1.50701 * 109.47058 * 179.97438 * 15 12 11 17 17 H 1.07996 * 120.00021 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99657 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99993 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00463 * 0.02562 * 18 16 15 21 21 H 1.48490 * 109.47314 * 89.99433 * 20 18 16 22 22 H 1.48503 * 109.47241 * 210.00022 * 20 18 16 23 23 H 1.48504 * 109.46667 * 329.99679 * 20 18 16 24 24 C 1.39067 * 119.99992 * 179.97438 * 4 3 2 25 25 O 1.35806 * 120.16461 * 0.02562 * 24 4 3 26 26 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 31 31 H 1.08007 * 119.82805 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.83378 * 180.27912 * 6 5 4 33 33 H 1.08003 * 120.00009 * 179.70182 * 7 6 5 34 34 H 1.08001 * 120.00519 * 0.02716 * 9 8 7 35 35 H 1.09005 * 109.47420 * 235.00059 * 11 10 9 36 36 H 1.09001 * 109.47593 * 355.00224 * 11 10 9 37 37 H 1.08996 * 109.47521 * 59.99394 * 13 12 11 38 38 H 1.09006 * 109.46908 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.46765 * 299.99167 * 13 12 11 40 40 H 1.09008 * 109.47037 * 59.99842 * 14 12 11 41 41 H 1.08996 * 109.47522 * 180.02562 * 14 12 11 42 42 H 1.09005 * 109.47164 * 300.00424 * 14 12 11 43 43 H 1.08995 * 109.47379 * 300.00110 * 15 12 11 44 44 H 1.09006 * 109.47078 * 60.00376 * 15 12 11 45 45 H 0.97000 * 120.00097 * 180.02562 * 19 18 16 46 46 H 0.96703 * 113.99433 * 90.00331 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1985 0.4271 0.0067 6 6 5.5722 0.6005 0.0014 7 6 6.1139 1.8679 0.0014 8 6 5.2755 2.9861 0.0010 9 6 5.8506 4.3431 0.0016 10 7 5.0712 5.3764 0.0017 11 6 5.6429 6.7251 0.0018 12 6 5.2806 7.4328 -1.3055 13 6 5.8432 6.6403 -2.4872 14 6 3.7585 7.5240 -1.4311 15 6 5.8771 8.8416 -1.3052 16 6 5.5207 9.5383 -2.5931 17 1 4.9276 9.0274 -3.3372 18 6 5.9509 10.8283 -2.8210 19 7 5.6403 11.4361 -3.9451 20 14 6.9760 11.7122 -1.5337 21 1 8.4164 11.4521 -1.7839 22 1 6.7159 13.1722 -1.6107 23 1 6.6106 11.2149 -0.1830 24 6 3.8861 2.8106 0.0000 25 8 3.0620 3.8900 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.7827 -0.5697 0.0114 32 1 6.2225 -0.2618 0.0016 33 1 7.1862 1.9968 0.0021 34 1 6.9225 4.4753 0.0020 35 1 5.2421 7.2897 0.8437 36 1 6.7273 6.6602 0.0912 37 1 5.4178 5.6368 -2.4872 38 1 5.5846 7.1442 -3.4186 39 1 6.9276 6.5754 -2.3978 40 1 3.3576 8.0885 -0.5892 41 1 3.5003 8.0277 -2.3626 42 1 3.3331 6.5204 -1.4312 43 1 5.4759 9.4059 -0.4634 44 1 6.9615 8.7770 -1.2156 45 1 5.9432 12.3435 -4.1056 46 1 2.8233 4.2029 0.8828 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806550298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:55 Heat of formation + Delta-G solvation = -44.420054 kcal Electronic energy + Delta-G solvation = -24853.890583 eV Core-core repulsion = 21323.270805 eV Total energy + Delta-G solvation = -3530.619778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.51502 -38.38367 -37.45870 -36.39745 -34.66017 -32.29856 -32.04481 -30.59174 -29.14118 -27.73771 -26.57309 -26.20694 -24.36377 -23.04521 -22.56694 -21.72612 -20.04068 -18.23055 -17.92728 -17.68063 -16.76403 -16.40827 -16.38260 -15.52520 -15.01391 -14.78202 -14.34080 -14.07993 -14.02629 -13.74610 -13.44085 -13.24961 -12.92105 -12.67198 -12.46836 -12.38570 -12.24591 -12.15716 -11.86380 -11.34627 -11.33072 -11.06918 -10.95533 -10.91811 -10.74959 -10.46920 -10.44122 -10.18588 -9.79281 -9.66533 -9.46454 -8.94377 -8.83484 -8.48346 -8.39753 -8.25064 -5.98189 -3.94490 0.72433 1.21288 2.57622 2.91999 3.32748 3.40480 3.43792 3.64143 4.15886 4.31156 4.49363 4.53517 4.58991 4.76865 4.86757 4.94791 5.00875 5.06716 5.23991 5.33631 5.36953 5.46294 5.46743 5.69834 5.71845 5.73035 5.88124 5.91685 6.07408 6.10814 6.18367 6.29338 6.34590 6.44520 6.54815 6.67779 6.74889 6.84539 7.12183 7.12386 7.19375 7.23166 7.36655 7.47546 7.84675 7.92129 8.04671 8.61776 9.07969 9.64385 11.14956 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.002823 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.449241 B = 9915.052168 C =10537.180423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.305 6.305 4 C 0.094 3.906 5 C -0.192 4.192 6 C -0.097 4.097 7 C -0.120 4.120 8 C -0.048 4.048 9 C 0.144 3.856 10 N -0.455 5.455 11 C 0.037 3.963 12 C -0.039 4.039 13 C -0.129 4.129 14 C -0.121 4.121 15 C -0.004 4.004 16 C -0.506 4.506 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.876 3.124 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.267 1.267 24 C 0.119 3.881 25 O -0.455 6.455 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.016 0.984 44 H 0.008 0.992 45 H 0.261 0.739 46 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 -26.185 11.814 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.219 6.219 4 C 0.048 3.952 5 C -0.212 4.212 6 C -0.115 4.115 7 C -0.141 4.141 8 C -0.049 4.049 9 C -0.067 4.067 10 N -0.163 5.163 11 C -0.092 4.092 12 C -0.040 4.040 13 C -0.187 4.187 14 C -0.178 4.178 15 C -0.042 4.042 16 C -0.544 4.544 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.704 3.296 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.191 1.191 24 C 0.070 3.930 25 O -0.263 6.263 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.382 -25.468 11.115 28.131 hybrid contribution 1.662 0.504 1.068 2.039 sum -2.720 -24.964 12.183 27.911 Atomic orbital electron populations 1.21766 0.92695 1.02697 1.03768 1.22786 0.96009 0.82271 1.01136 1.86182 1.18346 1.28763 1.88634 1.19423 0.82946 0.93629 0.99159 1.21190 0.94317 0.97645 1.08046 1.20778 0.94102 0.97184 0.99468 1.21068 0.99727 0.91192 1.02082 1.19116 0.91541 0.92839 1.01412 1.23875 0.95443 0.90657 0.96725 1.71904 1.38563 1.00300 1.05488 1.22751 0.96929 0.88928 1.00561 1.20392 0.96868 0.95796 0.90924 1.21767 0.98953 0.98173 0.99757 1.21649 0.94079 1.00404 1.01666 1.19655 0.95073 0.91374 0.98098 1.21119 1.33297 0.98388 1.01621 0.90398 1.25018 0.95976 0.97443 0.95164 1.69911 1.46762 1.13314 1.24488 0.86841 0.80914 0.78850 0.83029 1.20503 1.21509 1.19138 1.17894 0.88263 0.84383 1.02464 1.84895 1.65244 1.43812 1.32387 0.91503 0.91326 0.90485 0.92239 0.92126 0.85380 0.85446 0.85105 0.88428 0.89738 0.94420 0.94511 0.91181 0.94327 0.94202 0.92046 0.93036 0.96608 0.97356 0.92877 0.75964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.57 9.92 -34.34 -0.34 -3.91 16 4 C 0.09 1.12 6.69 -39.17 -0.26 0.86 16 5 C -0.19 -1.80 9.03 -39.40 -0.36 -2.15 16 6 C -0.10 -0.83 10.02 -39.65 -0.40 -1.23 16 7 C -0.12 -1.17 9.78 -39.16 -0.38 -1.55 16 8 C -0.05 -0.59 5.88 -104.93 -0.62 -1.21 16 9 C 0.14 1.95 10.26 -14.84 -0.15 1.79 16 10 N -0.46 -7.20 6.85 -59.09 -0.40 -7.60 16 11 C 0.04 0.65 5.28 -4.04 -0.02 0.62 16 12 C -0.04 -0.81 0.60 -154.51 -0.09 -0.90 16 13 C -0.13 -2.63 8.06 37.16 0.30 -2.33 16 14 C -0.12 -2.50 8.06 37.16 0.30 -2.20 16 15 C 0.00 -0.10 3.11 -27.89 -0.09 -0.19 16 16 C -0.51 -14.31 8.21 -34.44 -0.28 -14.60 16 17 H 0.08 2.37 5.92 -52.49 -0.31 2.06 16 18 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 19 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 20 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 23 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 24 C 0.12 1.59 6.73 -38.60 -0.26 1.33 16 25 O -0.45 -6.63 11.16 -33.71 -0.38 -7.01 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.36 7.64 -51.93 -0.40 -0.03 16 30 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 31 H 0.13 0.88 6.27 -52.48 -0.33 0.55 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.10 1.15 7.76 -52.49 -0.41 0.74 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 37 H 0.04 0.70 7.45 -51.93 -0.39 0.32 16 38 H 0.07 1.58 6.62 -51.93 -0.34 1.24 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.06 1.40 6.62 -51.93 -0.34 1.06 16 42 H 0.05 1.03 7.60 -51.93 -0.39 0.63 16 43 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 44 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.38 4.41 9.06 45.56 0.41 4.82 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -33.18 371.39 -7.86 -41.04 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.61 Total: 1.87 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -1.82 Total: -19.93 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.37 Total: -35.00 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.72 Total: -10.91 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.18 -7.86 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806550298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.379 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds