Wall clock time and date at job start Tue Mar 31 2020 09:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.36007 * 116.99577 * 179.97438 * 3 2 1 5 5 C 1.38519 * 120.00475 * 359.73273 * 4 3 2 6 6 C 1.38461 * 120.33909 * 179.71781 * 5 4 3 7 7 C 1.37834 * 120.33567 * 0.55195 * 6 5 4 8 8 C 1.39765 * 119.99375 * 359.72340 * 7 6 5 9 9 C 1.47385 * 120.16650 * 179.97438 * 8 7 6 10 10 N 1.29429 * 120.00033 * 180.02562 * 9 8 7 11 11 C 1.46496 * 119.99990 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47345 * 115.00207 * 11 10 9 13 13 C 1.53001 * 109.46841 * 300.00338 * 12 11 10 14 14 C 1.52999 * 109.47131 * 59.99762 * 12 11 10 15 15 C 1.52995 * 109.47517 * 179.97438 * 12 11 10 16 16 C 1.50701 * 109.47058 * 179.97438 * 15 12 11 17 17 H 1.07996 * 120.00021 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99657 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99993 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00463 * 0.02562 * 18 16 15 21 21 H 1.48490 * 109.47314 * 89.99433 * 20 18 16 22 22 H 1.48503 * 109.47241 * 210.00022 * 20 18 16 23 23 H 1.48504 * 109.46667 * 329.99679 * 20 18 16 24 24 C 1.39067 * 119.99992 * 179.97438 * 4 3 2 25 25 O 1.35806 * 120.16461 * 0.02562 * 24 4 3 26 26 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 31 31 H 1.08007 * 119.82805 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.83378 * 180.27912 * 6 5 4 33 33 H 1.08003 * 120.00009 * 179.70182 * 7 6 5 34 34 H 1.08001 * 120.00519 * 0.02716 * 9 8 7 35 35 H 1.09005 * 109.47420 * 235.00059 * 11 10 9 36 36 H 1.09001 * 109.47593 * 355.00224 * 11 10 9 37 37 H 1.08996 * 109.47521 * 59.99394 * 13 12 11 38 38 H 1.09006 * 109.46908 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.46765 * 299.99167 * 13 12 11 40 40 H 1.09008 * 109.47037 * 59.99842 * 14 12 11 41 41 H 1.08996 * 109.47522 * 180.02562 * 14 12 11 42 42 H 1.09005 * 109.47164 * 300.00424 * 14 12 11 43 43 H 1.08995 * 109.47379 * 300.00110 * 15 12 11 44 44 H 1.09006 * 109.47078 * 60.00376 * 15 12 11 45 45 H 0.97000 * 120.00097 * 180.02562 * 19 18 16 46 46 H 0.96703 * 113.99433 * 90.00331 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1985 0.4271 0.0067 6 6 5.5722 0.6005 0.0014 7 6 6.1139 1.8679 0.0014 8 6 5.2755 2.9861 0.0010 9 6 5.8506 4.3431 0.0016 10 7 5.0712 5.3764 0.0017 11 6 5.6429 6.7251 0.0018 12 6 5.2806 7.4328 -1.3055 13 6 5.8432 6.6403 -2.4872 14 6 3.7585 7.5240 -1.4311 15 6 5.8771 8.8416 -1.3052 16 6 5.5207 9.5383 -2.5931 17 1 4.9276 9.0274 -3.3372 18 6 5.9509 10.8283 -2.8210 19 7 5.6403 11.4361 -3.9451 20 14 6.9760 11.7122 -1.5337 21 1 8.4164 11.4521 -1.7839 22 1 6.7159 13.1722 -1.6107 23 1 6.6106 11.2149 -0.1830 24 6 3.8861 2.8106 0.0000 25 8 3.0620 3.8900 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.7827 -0.5697 0.0114 32 1 6.2225 -0.2618 0.0016 33 1 7.1862 1.9968 0.0021 34 1 6.9225 4.4753 0.0020 35 1 5.2421 7.2897 0.8437 36 1 6.7273 6.6602 0.0912 37 1 5.4178 5.6368 -2.4872 38 1 5.5846 7.1442 -3.4186 39 1 6.9276 6.5754 -2.3978 40 1 3.3576 8.0885 -0.5892 41 1 3.5003 8.0277 -2.3626 42 1 3.3331 6.5204 -1.4312 43 1 5.4759 9.4059 -0.4634 44 1 6.9615 8.7770 -1.2156 45 1 5.9432 12.3435 -4.1056 46 1 2.8233 4.2029 0.8828 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806550298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:55 Heat of formation + Delta-G solvation = -65.679789 kcal Electronic energy + Delta-G solvation = -24854.812474 eV Core-core repulsion = 21323.270805 eV Total energy + Delta-G solvation = -3531.541669 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.30395 -39.44139 -38.74496 -37.28060 -36.00313 -34.32668 -32.70197 -31.56920 -29.92540 -29.67288 -28.07053 -27.70472 -25.36399 -24.37892 -23.56205 -22.75701 -21.02449 -19.53827 -19.11306 -18.89102 -18.53979 -17.29878 -17.08278 -16.39787 -16.29482 -16.00249 -15.83112 -15.55696 -15.19093 -14.88661 -14.58185 -14.49960 -14.16197 -13.98121 -13.75356 -13.38050 -13.23131 -13.06026 -12.91395 -12.84508 -12.74207 -12.59182 -12.41581 -12.27005 -12.03044 -11.88646 -11.73549 -11.56217 -11.41263 -11.29113 -11.15786 -10.82304 -10.72115 -9.98955 -9.36601 -9.03172 -8.23457 -6.24905 -0.13578 0.44507 1.34958 1.37285 1.48642 1.61837 2.24805 2.38395 2.83031 3.10993 3.19578 3.42693 3.86449 4.01656 4.06339 4.07548 4.13178 4.19341 4.24946 4.27634 4.36604 4.42690 4.56471 4.59852 4.73349 4.78038 4.80629 4.92886 4.94695 4.95766 4.99892 5.08422 5.11149 5.21342 5.28005 5.34764 5.36065 5.39521 5.44186 5.52255 5.60592 5.65525 5.75983 5.79709 6.37594 6.40498 6.81468 6.96854 7.04351 7.37348 8.93093 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.002823 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.449241 B = 9915.052168 C =10537.180423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.332 6.332 4 C 0.076 3.924 5 C -0.184 4.184 6 C -0.091 4.091 7 C -0.113 4.113 8 C -0.071 4.071 9 C 0.159 3.841 10 N -0.488 5.488 11 C 0.048 3.952 12 C -0.040 4.040 13 C -0.117 4.117 14 C -0.108 4.108 15 C -0.001 4.001 16 C -0.507 4.507 17 H 0.039 0.961 18 C 0.000 4.000 19 N -0.955 5.955 20 Si 0.945 3.055 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.247 1.247 24 C 0.090 3.910 25 O -0.478 6.478 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.034 0.966 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.263 0.737 46 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -29.053 14.077 32.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.247 6.247 4 C 0.030 3.970 5 C -0.204 4.204 6 C -0.109 4.109 7 C -0.134 4.134 8 C -0.073 4.073 9 C -0.051 4.051 10 N -0.196 5.196 11 C -0.081 4.081 12 C -0.040 4.040 13 C -0.175 4.175 14 C -0.166 4.166 15 C -0.039 4.039 16 C -0.545 4.545 17 H 0.057 0.943 18 C -0.196 4.196 19 N -0.597 5.597 20 Si 0.769 3.231 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.171 1.171 24 C 0.041 3.959 25 O -0.288 6.288 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.172 0.828 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.138 0.862 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.439 -28.366 13.391 31.463 hybrid contribution 0.988 1.155 0.304 1.550 sum -1.451 -27.212 13.695 30.498 Atomic orbital electron populations 1.21806 0.92076 1.04094 1.02818 1.23073 0.96597 0.80887 1.02406 1.86154 1.18560 1.31186 1.88823 1.19594 0.83498 0.93882 1.00004 1.21573 0.94632 0.98058 1.06097 1.21236 0.94169 0.97969 0.97549 1.21430 1.00811 0.90739 1.00380 1.19242 0.91546 0.93123 1.03373 1.24317 0.96482 0.90693 0.93568 1.71974 1.38808 0.99842 1.08935 1.22464 0.97647 0.89944 0.98020 1.20297 0.95977 0.94450 0.93316 1.21619 0.99647 0.98127 0.98085 1.21499 0.94940 1.00225 0.99887 1.19593 0.95662 0.93078 0.95524 1.21384 1.32018 0.98532 1.02562 0.94327 1.25975 0.97617 0.98516 0.97494 1.70076 1.48770 1.13891 1.26984 0.85729 0.79317 0.77299 0.80721 1.19284 1.21381 1.17067 1.18266 0.88833 0.84698 1.04063 1.84853 1.65891 1.44774 1.33243 0.92068 0.92661 0.87873 0.90435 0.91154 0.82773 0.81814 0.82434 0.86211 0.89665 0.93177 0.93598 0.94634 0.93168 0.93821 0.95447 0.92470 0.96387 0.96442 0.92800 0.75398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.04 0.61 5.46 71.98 0.39 1.00 16 3 O -0.33 -7.65 9.92 -79.69 -0.79 -8.44 16 4 C 0.08 1.72 6.69 22.54 0.15 1.87 16 5 C -0.18 -2.87 9.03 22.39 0.20 -2.67 16 6 C -0.09 -1.18 10.02 22.23 0.22 -0.96 16 7 C -0.11 -1.79 9.78 22.54 0.22 -1.57 16 8 C -0.07 -1.64 5.88 -20.06 -0.12 -1.76 16 9 C 0.16 4.00 10.26 87.46 0.90 4.89 16 10 N -0.49 -14.93 6.85 -340.85 -2.34 -17.27 16 11 C 0.05 1.61 5.28 86.38 0.46 2.06 16 12 C -0.04 -1.64 0.60 -52.18 -0.03 -1.67 16 13 C -0.12 -4.82 8.06 71.98 0.58 -4.24 16 14 C -0.11 -4.63 8.06 71.98 0.58 -4.05 16 15 C 0.00 -0.04 3.11 29.85 0.09 0.06 16 16 C -0.51 -29.53 8.21 25.60 0.21 -29.32 16 17 H 0.04 2.50 5.92 -2.91 -0.02 2.48 16 18 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 19 N -0.96 -61.45 13.96 21.45 0.30 -61.15 16 20 Si 0.95 45.24 27.47 68.60 1.88 47.13 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 24 C 0.09 2.36 6.73 22.90 0.15 2.52 16 25 O -0.48 -14.36 11.16 -77.44 -0.86 -15.23 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.75 7.64 -2.39 -0.02 0.73 16 30 H 0.07 0.80 7.67 -2.39 -0.02 0.78 16 31 H 0.15 1.51 6.27 -2.91 -0.02 1.49 16 32 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.12 2.41 7.76 -2.91 -0.02 2.39 16 35 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 36 H 0.05 1.51 7.69 -2.39 -0.02 1.49 16 37 H 0.05 1.77 7.45 -2.39 -0.02 1.75 16 38 H 0.03 1.66 6.62 -2.38 -0.02 1.65 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.03 1.31 6.62 -2.39 -0.02 1.29 16 42 H 0.06 2.35 7.60 -2.38 -0.02 2.34 16 43 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 44 H 0.02 0.80 7.57 -2.38 -0.02 0.78 16 45 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.39 9.51 9.06 -74.05 -0.67 8.84 16 Total: -1.00 -74.91 371.39 3.65 -71.26 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.24 Total: 18.09 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 5.21 Total: -34.40 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.04 Total: -78.42 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -1.65 Total: -23.66 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -74.91 3.65 -71.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806550298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.583 kcal (2) G-P(sol) polarization free energy of solvation -74.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds