Wall clock time and date at job start Tue Mar 31 2020 09:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35754 * 117.00168 * 180.02562 * 3 2 1 5 5 C 1.39121 * 119.86168 * 359.97438 * 4 3 2 6 6 C 1.37615 * 120.23930 * 179.97438 * 5 4 3 7 7 C 1.39834 * 119.95589 * 0.02562 * 6 5 4 8 8 C 1.47195 * 120.13494 * 179.97438 * 7 6 5 9 9 N 1.29529 * 120.00030 * 180.02562 * 8 7 6 10 10 C 1.46501 * 120.00557 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47173 * 114.99741 * 10 9 8 12 12 C 1.53005 * 109.47408 * 300.00653 * 11 10 9 13 13 C 1.53004 * 109.47320 * 60.00208 * 11 10 9 14 14 C 1.52999 * 109.47615 * 180.02562 * 11 10 9 15 15 C 1.50698 * 109.47493 * 180.02562 * 14 11 10 16 16 H 1.07996 * 119.99909 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99700 * 179.97438 * 15 14 11 18 18 N 1.31518 * 120.00003 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99910 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47228 * 90.00099 * 19 17 15 21 21 H 1.48493 * 109.47231 * 210.00107 * 19 17 15 22 22 H 1.48502 * 109.47221 * 330.00343 * 19 17 15 23 23 C 1.40294 * 119.72561 * 0.02562 * 7 6 5 24 24 O 1.35708 * 120.11763 * 179.97438 * 23 7 6 25 25 C 1.38426 * 119.76519 * 359.74026 * 23 7 6 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 31 31 H 1.08000 * 119.88239 * 0.02562 * 5 4 3 32 32 H 1.07998 * 120.02392 * 180.02562 * 6 5 4 33 33 H 1.07996 * 120.00417 * 359.97438 * 8 7 6 34 34 H 1.08994 * 109.47498 * 235.00033 * 10 9 8 35 35 H 1.09004 * 109.46788 * 355.00299 * 10 9 8 36 36 H 1.08996 * 109.47113 * 59.99698 * 12 11 10 37 37 H 1.08994 * 109.47348 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.46702 * 300.00049 * 12 11 10 39 39 H 1.09004 * 109.46377 * 59.99683 * 13 11 10 40 40 H 1.08994 * 109.47204 * 179.97438 * 13 11 10 41 41 H 1.08996 * 109.47145 * 300.00267 * 13 11 10 42 42 H 1.09004 * 109.46689 * 300.00689 * 14 11 10 43 43 H 1.08999 * 109.46982 * 59.99652 * 14 11 10 44 44 H 0.97001 * 119.99611 * 180.02562 * 18 17 15 45 45 H 0.96697 * 114.00376 * 89.99172 * 24 23 7 46 46 H 1.08000 * 119.98090 * 180.26110 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3522 1.5251 -0.0005 5 6 4.1970 0.4198 -0.0005 6 6 5.5624 0.5911 -0.0016 7 6 6.1044 1.8801 -0.0022 8 6 7.5643 2.0679 -0.0028 9 7 8.0636 3.2631 -0.0028 10 6 9.5166 3.4502 -0.0028 11 6 9.9446 4.1198 -1.3102 12 6 9.5443 3.2341 -2.4918 13 6 9.2554 5.4800 -1.4360 14 6 11.4621 4.3146 -1.3106 15 6 11.8836 4.9748 -2.5980 16 1 11.1431 5.2302 -3.3415 17 6 13.2145 5.2535 -2.8263 18 7 14.1161 4.9428 -1.9206 19 14 13.7370 6.0711 -4.4224 20 1 13.7134 7.5463 -4.2538 21 1 15.1121 5.6352 -4.7749 22 1 12.8009 5.6820 -5.5076 23 6 5.2510 2.9936 -0.0011 24 8 5.7684 4.2482 -0.0011 25 6 3.8792 2.8080 -0.0049 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7797 -0.5764 -0.0005 32 1 6.2150 -0.2694 -0.0020 33 1 8.2193 1.2092 -0.0023 34 1 9.8018 4.0811 0.8389 35 1 10.0076 2.4811 0.0867 36 1 8.4632 3.0950 -2.4918 37 1 9.8496 3.7109 -3.4231 38 1 10.0353 2.2651 -2.4022 39 1 9.5405 6.1110 -0.5941 40 1 9.5606 5.9572 -2.3671 41 1 8.1743 5.3409 -1.4360 42 1 11.7476 4.9454 -0.4687 43 1 11.9528 3.3454 -1.2211 44 1 15.0524 5.1393 -2.0811 45 1 5.9178 4.6120 -0.8845 46 1 3.2190 3.6627 -0.0084 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806552118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:07 Heat of formation + Delta-G solvation = -70.462084 kcal Electronic energy + Delta-G solvation = -24489.157067 eV Core-core repulsion = 20957.408022 eV Total energy + Delta-G solvation = -3531.749045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.26227 -39.68763 -38.92094 -36.94616 -35.94423 -34.30122 -32.86922 -31.10784 -30.64045 -29.00269 -27.97180 -27.47726 -25.28309 -24.83175 -23.50300 -22.90695 -21.01861 -19.70400 -19.49375 -18.35623 -17.83310 -17.35744 -17.01428 -16.87242 -16.57587 -15.78860 -15.72044 -15.46153 -15.23409 -14.84449 -14.51092 -14.36399 -14.13200 -13.94800 -13.84669 -13.37325 -13.16676 -13.10210 -12.91295 -12.78802 -12.68509 -12.57863 -12.44543 -12.31486 -12.05267 -11.98360 -11.80623 -11.54955 -11.39948 -11.19150 -11.01690 -10.66394 -10.52433 -9.96871 -9.75324 -8.89612 -8.15525 -6.23053 -0.04846 0.33047 1.40104 1.40860 1.51334 1.63309 2.18287 2.42575 2.79538 3.17980 3.25295 3.50534 3.79180 3.94054 4.05770 4.11653 4.13244 4.20789 4.25115 4.34275 4.42836 4.45768 4.55552 4.63850 4.75631 4.84500 4.85801 4.93686 4.98655 5.00627 5.04023 5.13718 5.16074 5.22312 5.32479 5.39786 5.46210 5.48708 5.49251 5.52985 5.63320 5.65956 5.81800 5.89022 6.31323 6.43150 6.90609 6.94574 7.01850 7.44109 8.96612 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035385 B = 0.002369 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.115490 B =11815.772742 C =11897.621273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.155 3.845 5 C -0.221 4.221 6 C -0.029 4.029 7 C -0.147 4.147 8 C 0.166 3.834 9 N -0.493 5.493 10 C 0.052 3.948 11 C -0.047 4.047 12 C -0.115 4.115 13 C -0.108 4.108 14 C 0.041 3.959 15 C -0.515 4.515 16 H 0.066 0.934 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.262 1.262 23 C 0.179 3.821 24 O -0.484 6.484 25 C -0.209 4.209 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.030 0.970 40 H 0.042 0.958 41 H 0.066 0.934 42 H -0.015 1.015 43 H -0.014 1.014 44 H 0.260 0.740 45 H 0.401 0.599 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.901 -13.479 3.029 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.108 3.892 5 C -0.239 4.239 6 C -0.049 4.049 7 C -0.149 4.149 8 C -0.043 4.043 9 N -0.201 5.201 10 C -0.077 4.077 11 C -0.048 4.048 12 C -0.173 4.173 13 C -0.165 4.165 14 C 0.003 3.997 15 C -0.553 4.553 16 H 0.084 0.916 17 C -0.202 4.202 18 N -0.578 5.578 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.187 1.187 23 C 0.131 3.869 24 O -0.296 6.296 25 C -0.228 4.228 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.178 0.822 32 H 0.179 0.821 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.003 0.997 43 H 0.005 0.995 44 H 0.069 0.931 45 H 0.261 0.739 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -26.997 -12.395 3.659 29.931 hybrid contribution 1.693 -0.097 -0.911 1.925 sum -25.304 -12.492 2.748 28.353 Atomic orbital electron populations 1.21822 0.91786 1.04197 1.03062 1.23147 0.96722 0.80417 1.02855 1.86039 1.18645 1.31871 1.87934 1.19003 0.82910 0.93614 0.93714 1.21403 0.93613 0.98948 1.09969 1.21240 0.94999 0.95723 0.92975 1.19298 0.91479 0.93873 1.10235 1.24230 0.93651 0.93498 0.92941 1.71978 1.12705 1.24981 1.10439 1.22372 0.87626 0.99350 0.98374 1.20454 0.95502 0.95817 0.92986 1.21613 0.99437 0.98220 0.98000 1.21517 0.99512 0.95274 1.00182 1.19008 0.90742 0.94417 0.95520 1.21577 0.92441 1.38010 1.03261 0.91632 1.25944 0.97180 0.96907 1.00172 1.70112 1.01669 1.49533 1.36450 0.85540 0.77474 0.78677 0.79932 1.20152 1.21142 1.18658 1.18410 0.89406 0.84913 0.94126 1.84726 1.84290 1.26507 1.34121 1.20662 0.94454 0.96383 1.11291 0.88079 0.92064 0.92006 0.90460 0.90554 0.82160 0.82080 0.87207 0.91436 0.94681 0.92604 0.93296 0.94381 0.95051 0.93876 0.91520 0.99701 0.99515 0.93114 0.73921 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 71.98 0.74 -0.34 16 2 C 0.04 0.41 5.45 71.98 0.39 0.80 16 3 O -0.33 -5.84 10.12 -90.80 -0.92 -6.76 16 4 C 0.15 2.96 6.69 22.59 0.15 3.11 16 5 C -0.22 -3.31 9.01 22.33 0.20 -3.10 16 6 C -0.03 -0.48 9.78 22.51 0.22 -0.26 16 7 C -0.15 -3.38 5.88 -20.04 -0.12 -3.49 16 8 C 0.17 4.36 10.25 87.39 0.90 5.26 16 9 N -0.49 -15.70 6.85 -341.00 -2.34 -18.03 16 10 C 0.05 1.94 5.28 86.38 0.46 2.39 16 11 C -0.05 -1.96 0.60 -52.18 -0.03 -1.99 16 12 C -0.12 -4.39 8.06 71.98 0.58 -3.81 16 13 C -0.11 -4.25 8.06 71.98 0.58 -3.67 16 14 C 0.04 2.15 4.04 29.85 0.12 2.27 16 15 C -0.51 -28.83 7.65 25.60 0.20 -28.64 16 16 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 17 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 18 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 19 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.18 4.42 6.71 22.81 0.15 4.58 16 24 O -0.48 -13.04 11.37 -90.29 -1.03 -14.06 16 25 C -0.21 -4.65 9.91 22.42 0.22 -4.43 16 26 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.54 7.65 -2.39 -0.02 0.53 16 30 H 0.08 0.55 7.65 -2.39 -0.02 0.53 16 31 H 0.16 1.37 6.27 -2.91 -0.02 1.36 16 32 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.11 2.48 7.77 -2.91 -0.02 2.46 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.03 1.27 7.69 -2.39 -0.02 1.25 16 36 H 0.06 1.84 7.45 -2.39 -0.02 1.82 16 37 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.04 1.79 6.61 -2.39 -0.02 1.77 16 41 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 42 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 43 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 44 H 0.26 15.14 8.31 -92.71 -0.77 14.36 16 45 H 0.40 8.75 9.06 -74.06 -0.67 8.07 16 46 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -70.14 375.20 3.55 -66.59 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.30 Total: 13.95 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 5.22 Total: -31.16 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -2.05 Total: -75.39 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.95 Total: -20.82 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.14 3.55 -66.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806552118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.867 kcal (2) G-P(sol) polarization free energy of solvation -70.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds