Wall clock time and date at job start Tue Mar 31 2020 09:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46884 * 2 1 4 4 C 1.35753 * 116.99672 * 179.97438 * 3 2 1 5 5 C 1.39117 * 119.86555 * 359.97438 * 4 3 2 6 6 C 1.37620 * 120.24178 * 179.97438 * 5 4 3 7 7 C 1.39834 * 119.95146 * 0.02901 * 6 5 4 8 8 C 1.47200 * 120.13190 * 179.97438 * 7 6 5 9 9 N 1.29524 * 120.00237 * 295.38379 * 8 7 6 10 10 C 1.46506 * 119.99910 * 354.37544 * 9 8 7 11 11 C 1.53002 * 109.47299 * 187.69750 * 10 9 8 12 12 C 1.53005 * 109.46919 * 300.00217 * 11 10 9 13 13 C 1.53011 * 109.46996 * 59.99601 * 11 10 9 14 14 C 1.52992 * 109.47452 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47475 * 180.02562 * 14 11 10 16 16 H 1.07997 * 119.99522 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00147 * 180.02562 * 15 14 11 18 18 N 1.31510 * 119.99841 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00146 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46807 * 89.99691 * 19 17 15 21 21 H 1.48492 * 109.47414 * 209.99991 * 19 17 15 22 22 H 1.48501 * 109.46851 * 330.00278 * 19 17 15 23 23 C 1.40294 * 119.72936 * 359.97438 * 7 6 5 24 24 O 1.35705 * 120.11596 * 180.02562 * 23 7 6 25 25 C 1.38417 * 119.76305 * 359.73087 * 23 7 6 26 26 H 1.09006 * 109.47566 * 300.00118 * 1 2 3 27 27 H 1.08998 * 109.47381 * 60.00110 * 1 2 3 28 28 H 1.09002 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47220 * 239.99723 * 2 1 3 30 30 H 1.08999 * 109.46877 * 119.99757 * 2 1 3 31 31 H 1.08006 * 119.88291 * 359.97438 * 5 4 3 32 32 H 1.07995 * 120.02691 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.99756 * 115.38990 * 8 7 6 34 34 H 1.09002 * 109.46690 * 307.69772 * 10 9 8 35 35 H 1.09001 * 109.47270 * 67.69739 * 10 9 8 36 36 H 1.09000 * 109.47271 * 59.99829 * 12 11 10 37 37 H 1.08999 * 109.46713 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.46963 * 299.99591 * 12 11 10 39 39 H 1.09004 * 109.46327 * 60.00037 * 13 11 10 40 40 H 1.08995 * 109.47038 * 180.02562 * 13 11 10 41 41 H 1.08999 * 109.46951 * 300.00295 * 13 11 10 42 42 H 1.09009 * 109.47009 * 300.00278 * 14 11 10 43 43 H 1.09000 * 109.46824 * 59.99529 * 14 11 10 44 44 H 0.97002 * 120.00037 * 179.97438 * 18 17 15 45 45 H 0.96692 * 114.00208 * 95.01160 * 24 23 7 46 46 H 1.08000 * 119.98475 * 180.27064 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3521 1.5252 0.0005 5 6 4.1969 0.4199 0.0016 6 6 5.5624 0.5913 0.0016 7 6 6.1043 1.8803 0.0012 8 6 7.5643 2.0682 0.0018 9 7 8.2675 1.6745 1.0157 10 6 7.6006 1.1556 2.2125 11 6 8.6339 0.9440 3.3209 12 6 9.6891 -0.0589 2.8498 13 6 9.3086 2.2771 3.6505 14 6 7.9374 0.4027 4.5710 15 6 8.9550 0.1948 5.6629 16 1 9.9946 0.4253 5.4830 17 6 8.5589 -0.2906 6.8911 18 7 7.2930 -0.5717 7.1098 19 14 9.8204 -0.5489 8.2443 20 1 9.9415 0.6917 9.0515 21 1 9.3864 -1.6679 9.1187 22 1 11.1363 -0.8757 7.6385 23 6 5.2508 2.9938 0.0002 24 8 5.7683 4.2483 -0.0008 25 6 3.8792 2.8082 -0.0060 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7797 -0.5763 0.0024 32 1 6.2151 -0.2692 0.0029 33 1 8.0491 2.5344 -0.8433 34 1 6.8489 1.8701 2.5481 35 1 7.1200 0.2059 1.9777 36 1 10.1852 0.3272 1.9593 37 1 10.4254 -0.2093 3.6392 38 1 9.2084 -1.0086 2.6150 39 1 8.5568 2.9915 3.9861 40 1 10.0450 2.1263 4.4398 41 1 9.8048 2.6631 2.7600 42 1 7.1858 1.1175 4.9064 43 1 7.4564 -0.5469 4.3364 44 1 7.0143 -0.9136 7.9738 45 1 5.8470 4.6406 -0.8810 46 1 3.2189 3.6628 -0.0112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806552119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:16 Heat of formation + Delta-G solvation = -77.447790 kcal Electronic energy + Delta-G solvation = -24897.505699 eV Core-core repulsion = 21365.453731 eV Total energy + Delta-G solvation = -3532.051968 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43115 -39.82664 -38.91592 -37.27669 -36.02286 -34.36049 -32.83526 -31.11160 -30.42883 -29.09082 -27.91558 -27.77228 -25.30669 -24.93319 -24.02794 -22.77046 -21.01263 -19.99245 -19.32420 -18.35822 -18.02513 -17.40019 -17.11563 -17.05123 -16.64777 -16.11098 -15.69564 -15.61283 -15.19047 -14.90191 -14.62278 -14.33635 -14.17160 -14.13280 -13.93850 -13.68242 -13.41260 -13.09888 -12.92580 -12.74198 -12.63451 -12.61566 -12.38525 -12.29483 -12.16142 -11.98377 -11.84640 -11.62983 -11.53395 -11.03683 -10.86426 -10.83442 -10.53204 -10.11986 -9.87846 -9.14434 -8.16213 -6.23862 0.07583 0.18834 1.31523 1.39294 1.40440 1.51307 2.09744 2.42209 2.52444 3.17284 3.25620 3.47431 3.66737 3.73503 3.97816 4.02616 4.10126 4.14511 4.16983 4.31531 4.35228 4.37785 4.42344 4.67815 4.75980 4.79783 4.88403 4.89060 4.92036 4.96948 5.05478 5.11882 5.16000 5.18841 5.23139 5.26752 5.38441 5.44806 5.48300 5.52119 5.52684 5.69369 5.81618 5.88520 6.31060 6.31781 6.84894 6.86716 6.92561 7.43426 8.96435 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.003441 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.107975 B = 8135.105243 C = 9477.045627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.327 6.327 4 C 0.147 3.853 5 C -0.220 4.220 6 C -0.048 4.048 7 C -0.189 4.189 8 C 0.194 3.806 9 N -0.508 5.508 10 C 0.063 3.937 11 C -0.047 4.047 12 C -0.108 4.108 13 C -0.110 4.110 14 C 0.042 3.958 15 C -0.516 4.516 16 H 0.066 0.934 17 C -0.004 4.004 18 N -0.937 5.937 19 Si 0.959 3.041 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.262 1.262 23 C 0.173 3.827 24 O -0.498 6.498 25 C -0.199 4.199 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.194 0.806 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.024 0.976 40 H 0.046 0.954 41 H 0.062 0.938 42 H -0.022 1.022 43 H -0.015 1.015 44 H 0.260 0.740 45 H 0.417 0.583 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 4.011 -21.969 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.241 6.241 4 C 0.101 3.899 5 C -0.239 4.239 6 C -0.067 4.067 7 C -0.192 4.192 8 C -0.019 4.019 9 N -0.212 5.212 10 C -0.066 4.066 11 C -0.047 4.047 12 C -0.166 4.166 13 C -0.167 4.167 14 C 0.005 3.995 15 C -0.554 4.554 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.579 5.579 19 Si 0.784 3.216 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.186 1.186 23 C 0.126 3.874 24 O -0.312 6.312 25 C -0.218 4.218 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.151 0.849 33 H 0.210 0.790 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.081 0.919 42 H -0.003 1.003 43 H 0.003 0.997 44 H 0.069 0.931 45 H 0.278 0.722 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.727 3.870 -20.816 22.901 hybrid contribution -0.811 -0.447 0.728 1.178 sum -9.538 3.423 -20.088 22.499 Atomic orbital electron populations 1.21810 0.91231 1.04254 1.03303 1.23127 0.97127 0.80538 1.02409 1.86023 1.18471 1.31561 1.88043 1.18989 0.82879 0.93733 0.94344 1.21363 0.93851 0.99078 1.09591 1.21001 0.94792 0.96047 0.94877 1.20387 0.96082 0.93319 1.09408 1.25052 0.88007 0.92108 0.96726 1.72231 1.37809 1.10384 1.00804 1.22062 0.95117 0.98141 0.91288 1.20370 0.95133 0.96083 0.93128 1.21519 0.97978 0.97011 1.00068 1.21539 0.99348 0.95514 1.00342 1.18989 0.94572 0.93418 0.92532 1.21581 0.94933 1.41650 0.97235 0.91620 1.25944 0.97118 0.95653 1.01343 1.70116 1.17196 1.46454 1.24108 0.85534 0.79472 0.77755 0.78850 1.20091 1.20939 1.18605 1.18066 0.89206 0.84293 0.95838 1.84762 1.84346 1.25951 1.36151 1.20733 0.94874 0.96083 1.10089 0.92204 0.91202 0.88204 0.90249 0.91878 0.83365 0.84944 0.78972 0.94600 0.92580 0.91727 0.93709 0.94881 0.95654 0.93523 0.91863 1.00350 0.99650 0.93088 0.72190 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 71.98 0.74 -1.02 16 2 C 0.04 0.67 5.45 71.98 0.39 1.06 16 3 O -0.33 -7.28 10.12 -90.78 -0.92 -8.20 16 4 C 0.15 3.49 6.69 22.59 0.15 3.64 16 5 C -0.22 -4.99 9.01 22.33 0.20 -4.79 16 6 C -0.05 -1.16 8.36 22.51 0.19 -0.97 16 7 C -0.19 -4.62 4.56 -20.04 -0.09 -4.71 16 8 C 0.19 4.68 10.51 87.39 0.92 5.59 16 9 N -0.51 -16.22 9.06 -340.96 -3.09 -19.31 16 10 C 0.06 2.45 3.91 86.38 0.34 2.79 16 11 C -0.05 -2.07 0.60 -52.18 -0.03 -2.10 16 12 C -0.11 -4.45 8.06 71.98 0.58 -3.87 16 13 C -0.11 -4.68 8.06 71.99 0.58 -4.10 16 14 C 0.04 2.34 4.04 29.84 0.12 2.46 16 15 C -0.52 -29.84 7.65 25.60 0.20 -29.64 16 16 H 0.07 3.65 5.68 -2.91 -0.02 3.64 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 18 N -0.94 -58.75 13.29 21.45 0.28 -58.47 16 19 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 23 C 0.17 4.02 6.71 22.81 0.15 4.17 16 24 O -0.50 -9.90 12.95 -90.25 -1.17 -11.07 16 25 C -0.20 -4.64 9.91 22.42 0.22 -4.42 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.98 7.65 -2.39 -0.02 0.97 16 30 H 0.06 1.03 7.65 -2.39 -0.02 1.01 16 31 H 0.15 2.72 6.27 -2.91 -0.02 2.70 16 32 H 0.13 3.08 7.76 -2.91 -0.02 3.06 16 33 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.04 1.53 7.86 -2.39 -0.02 1.51 16 35 H 0.06 2.18 6.82 -2.39 -0.02 2.17 16 36 H 0.06 2.35 7.60 -2.39 -0.02 2.33 16 37 H 0.04 1.93 6.62 -2.39 -0.02 1.91 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.05 2.06 6.62 -2.39 -0.02 2.04 16 41 H 0.06 2.39 7.60 -2.39 -0.02 2.37 16 42 H -0.02 -1.34 8.14 -2.38 -0.02 -1.36 16 43 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 44 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.42 3.24 9.06 -74.06 -0.67 2.57 16 46 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -74.07 374.16 2.55 -71.51 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.30 Total: 13.58 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 5.12 Total: -35.66 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.80 Total: -77.78 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -2.09 Total: -19.27 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.07 2.55 -71.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806552119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.937 kcal (2) G-P(sol) polarization free energy of solvation -74.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds