Wall clock time and date at job start Tue Mar 31 2020 09:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47390 * 2 1 4 4 C 1.35986 * 116.99914 * 179.97438 * 3 2 1 5 5 C 1.38933 * 119.90996 * 0.02562 * 4 3 2 6 6 C 1.38089 * 120.33769 * 179.97438 * 5 4 3 7 7 C 1.38608 * 120.15180 * 359.97438 * 6 5 4 8 8 O 1.35791 * 120.09481 * 179.97438 * 7 6 5 9 9 C 1.40120 * 119.81542 * 0.02562 * 7 6 5 10 10 C 1.47383 * 120.16606 * 180.02562 * 9 7 6 11 11 N 1.29427 * 120.00120 * 209.44441 * 10 9 7 12 12 C 1.46500 * 119.99779 * 13.43277 * 11 10 9 13 13 C 1.53006 * 109.47022 * 123.52349 * 12 11 10 14 14 C 1.52996 * 109.47110 * 304.24291 * 13 12 11 15 15 C 1.52996 * 109.47104 * 64.25056 * 13 12 11 16 16 C 1.53008 * 109.46786 * 184.24418 * 13 12 11 17 17 C 1.50700 * 109.46770 * 182.49435 * 16 13 12 18 18 H 1.07998 * 120.00160 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99894 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99919 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00118 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46821 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46877 * 119.99845 * 21 19 17 24 24 H 1.48500 * 109.47217 * 239.99996 * 21 19 17 25 25 C 1.38265 * 119.90692 * 179.72599 * 4 3 2 26 26 H 1.08997 * 109.47202 * 59.99760 * 1 2 3 27 27 H 1.09001 * 109.47569 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47099 * 300.00301 * 1 2 3 29 29 H 1.09004 * 109.47099 * 239.99698 * 2 1 3 30 30 H 1.09011 * 109.47030 * 120.00308 * 2 1 3 31 31 H 1.07998 * 119.83559 * 0.02562 * 5 4 3 32 32 H 1.07996 * 119.92571 * 180.02562 * 6 5 4 33 33 H 0.96691 * 113.99917 * 84.99035 * 8 7 6 34 34 H 1.08005 * 119.99976 * 29.44651 * 10 9 7 35 35 H 1.09000 * 109.46866 * 243.52056 * 12 11 10 36 36 H 1.08994 * 109.47242 * 3.52510 * 12 11 10 37 37 H 1.09001 * 109.46734 * 64.76172 * 14 13 12 38 38 H 1.09003 * 109.46816 * 184.75858 * 14 13 12 39 39 H 1.08997 * 109.47705 * 304.76144 * 14 13 12 40 40 H 1.09000 * 109.47448 * 59.99495 * 15 13 12 41 41 H 1.08999 * 109.46950 * 179.97438 * 15 13 12 42 42 H 1.09007 * 109.46861 * 299.99250 * 15 13 12 43 43 H 1.08994 * 109.47211 * 302.49320 * 16 13 12 44 44 H 1.08998 * 109.47061 * 62.49787 * 16 13 12 45 45 H 0.96995 * 119.99990 * 179.97438 * 20 19 17 46 46 H 1.07998 * 120.08016 * 359.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5253 0.0005 5 6 4.1990 0.4222 0.0005 6 6 5.5693 0.5928 0.0005 7 6 6.1121 1.8682 0.0000 8 8 7.4598 2.0346 0.0006 9 6 5.2663 2.9853 0.0001 10 6 5.8352 4.3449 -0.0010 11 7 5.1849 5.3189 0.5499 12 6 4.0428 5.0360 1.4227 13 6 4.2782 5.6735 2.7935 14 6 5.6048 5.1723 3.3679 15 6 4.3286 7.1955 2.6464 16 6 3.1365 5.2899 3.7372 17 6 3.3363 5.9671 5.0686 18 1 4.1917 6.6073 5.2258 19 6 2.4270 5.7693 6.0859 20 7 1.3856 4.9892 5.8946 21 14 2.6750 6.6081 7.7365 22 1 3.9139 7.4258 7.6950 23 1 1.5125 7.4859 8.0252 24 1 2.7953 5.5799 8.8012 25 6 3.8810 2.8038 -0.0052 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7817 -0.5740 -0.0003 32 1 6.2196 -0.2695 0.0001 33 1 7.8600 2.0057 -0.8792 34 1 6.7947 4.5285 -0.4616 35 1 3.1364 5.4497 0.9805 36 1 3.9316 3.9579 1.5376 37 1 6.4261 5.5180 2.7401 38 1 5.7324 5.5595 4.3788 39 1 5.6011 4.0827 3.3939 40 1 3.3835 7.5525 2.2372 41 1 4.4959 7.6496 3.6230 42 1 5.1420 7.4688 1.9741 43 1 2.1870 5.6078 3.3067 44 1 3.1284 4.2089 3.8770 45 1 0.7461 4.8497 6.6105 46 1 3.2230 3.6602 -0.0105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806552837.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:31 Heat of formation + Delta-G solvation = -41.588799 kcal Electronic energy + Delta-G solvation = -25447.589869 eV Core-core repulsion = 21917.092864 eV Total energy + Delta-G solvation = -3530.497005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55220 -38.80868 -37.69473 -36.01406 -34.72928 -32.23575 -31.97086 -30.44623 -28.89157 -27.20609 -26.56633 -26.18896 -24.37486 -23.25049 -22.52829 -22.03886 -19.91962 -18.63869 -18.12658 -17.19876 -16.50911 -16.24287 -16.14325 -15.59176 -15.20143 -14.55067 -14.45124 -14.19877 -13.83381 -13.65205 -13.39519 -13.05981 -12.93387 -12.63821 -12.55990 -12.29150 -12.05631 -11.94171 -11.74703 -11.42974 -11.13466 -10.89050 -10.84059 -10.72280 -10.68777 -10.53252 -10.43638 -10.12006 -10.05593 -9.56450 -9.28404 -8.92718 -8.85689 -8.34437 -8.28468 -8.04922 -5.92782 -3.92651 0.80973 1.22089 2.53237 3.07507 3.35045 3.42530 3.46858 3.56387 4.10785 4.51314 4.57769 4.61652 4.74929 4.77811 4.88109 4.95131 5.07189 5.16224 5.33313 5.42995 5.48604 5.63487 5.63723 5.80530 5.82305 5.87775 5.90407 6.06395 6.17036 6.19328 6.30515 6.32391 6.42477 6.53952 6.63873 6.72870 6.86365 6.89615 7.26351 7.27066 7.31008 7.35603 7.58382 7.74210 7.88265 8.05036 8.08862 8.52198 9.12535 9.69800 11.18969 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.004346 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.978744 B = 6440.798013 C = 7953.446874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.311 6.311 4 C 0.123 3.877 5 C -0.185 4.185 6 C -0.113 4.113 7 C 0.092 3.908 8 O -0.489 6.489 9 C -0.092 4.092 10 C 0.164 3.836 11 N -0.480 5.480 12 C 0.021 3.979 13 C -0.048 4.048 14 C -0.125 4.125 15 C -0.120 4.120 16 C 0.035 3.965 17 C -0.505 4.505 18 H 0.060 0.940 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.116 4.116 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.385 0.615 34 H 0.158 0.842 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.015 0.985 44 H 0.013 0.987 45 H 0.258 0.742 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 -11.663 -17.107 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.225 6.225 4 C 0.077 3.923 5 C -0.204 4.204 6 C -0.132 4.132 7 C 0.045 3.955 8 O -0.298 6.298 9 C -0.095 4.095 10 C -0.047 4.047 11 N -0.185 5.185 12 C -0.107 4.107 13 C -0.048 4.048 14 C -0.182 4.182 15 C -0.177 4.177 16 C -0.003 4.003 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.716 3.284 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.137 4.137 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.241 0.759 34 H 0.175 0.825 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.067 0.933 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.357 -10.497 -16.255 20.078 hybrid contribution -0.165 -0.890 0.589 1.080 sum 5.192 -11.388 -15.666 20.051 Atomic orbital electron populations 1.21783 0.92598 1.02770 1.03930 1.22797 0.96133 0.81909 1.01199 1.86149 1.18538 1.29306 1.88506 1.18791 0.82695 0.93680 0.97090 1.21170 0.93718 0.98182 1.07377 1.21145 0.94715 0.96858 1.00440 1.18344 0.82997 0.91122 1.03034 1.84867 1.16535 1.94885 1.33505 1.20163 0.92426 0.95643 1.01292 1.24570 0.97348 0.85624 0.97143 1.72044 1.09736 1.32574 1.04173 1.23185 0.92647 1.00595 0.94255 1.20597 0.97720 0.95178 0.91312 1.21709 0.96004 0.99401 1.01070 1.21664 0.99774 0.95333 1.00951 1.19130 0.91670 0.96481 0.92984 1.21269 1.08459 1.27846 0.96756 0.92175 1.25013 0.95397 0.95503 0.98666 1.69984 1.12916 1.38058 1.32767 0.86604 0.78062 0.79391 0.84385 1.19727 1.21145 1.21178 1.20738 0.94003 0.95787 1.03125 0.91550 0.90439 0.91016 0.92218 0.91884 0.85110 0.85042 0.75943 0.82491 0.90372 0.91792 0.94464 0.91807 0.94547 0.94183 0.92282 0.93993 0.96686 0.96850 0.93259 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.05 0.54 5.46 37.16 0.20 0.75 16 3 O -0.31 -4.35 10.13 -19.70 -0.20 -4.55 16 4 C 0.12 1.72 6.68 -39.31 -0.26 1.45 16 5 C -0.18 -2.13 9.03 -39.38 -0.36 -2.49 16 6 C -0.11 -1.25 9.97 -39.50 -0.39 -1.64 16 7 C 0.09 1.12 6.72 -38.74 -0.26 0.86 16 8 O -0.49 -5.04 12.88 -19.08 -0.25 -5.28 16 9 C -0.09 -1.28 5.28 -104.92 -0.55 -1.84 16 10 C 0.16 2.32 10.69 -14.84 -0.16 2.16 16 11 N -0.48 -8.18 9.15 -59.09 -0.54 -8.72 16 12 C 0.02 0.41 3.42 -4.04 -0.01 0.40 16 13 C -0.05 -1.04 0.60 -154.50 -0.09 -1.14 16 14 C -0.12 -2.65 8.04 37.16 0.30 -2.35 16 15 C -0.12 -2.52 8.07 37.16 0.30 -2.22 16 16 C 0.03 0.92 4.04 -27.88 -0.11 0.81 16 17 C -0.50 -14.33 7.59 -34.44 -0.26 -14.60 16 18 H 0.06 1.67 5.69 -52.49 -0.30 1.37 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 21 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C -0.12 -1.74 7.27 -39.02 -0.28 -2.03 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 30 H 0.06 0.59 7.65 -51.92 -0.40 0.19 16 31 H 0.13 1.17 6.27 -52.49 -0.33 0.84 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.39 1.85 9.06 45.56 0.41 2.27 16 34 H 0.16 1.71 7.95 -52.48 -0.42 1.29 16 35 H 0.08 1.51 7.88 -51.93 -0.41 1.10 16 36 H 0.06 1.26 4.45 -51.93 -0.23 1.03 16 37 H 0.04 0.72 7.66 -51.93 -0.40 0.33 16 38 H 0.06 1.43 6.65 -51.93 -0.35 1.09 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.30 6.46 -51.93 -0.34 0.97 16 42 H 0.04 0.81 7.73 -51.92 -0.40 0.41 16 43 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.14 2.28 5.78 -52.49 -0.30 1.98 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -33.78 369.15 -7.74 -41.52 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.37 Total: 2.38 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -1.66 Total: -21.34 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.20 Total: -35.40 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.45 Total: -9.83 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.78 -7.74 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806552837.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.068 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds