Wall clock time and date at job start Tue Mar 31 2020 09:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47390 * 2 1 4 4 C 1.35986 * 116.99914 * 179.97438 * 3 2 1 5 5 C 1.38933 * 119.90996 * 0.02562 * 4 3 2 6 6 C 1.38089 * 120.33769 * 179.97438 * 5 4 3 7 7 C 1.38608 * 120.15180 * 359.97438 * 6 5 4 8 8 O 1.35791 * 120.09481 * 179.97438 * 7 6 5 9 9 C 1.40120 * 119.81542 * 0.02562 * 7 6 5 10 10 C 1.47383 * 120.16606 * 180.02562 * 9 7 6 11 11 N 1.29427 * 120.00120 * 209.44441 * 10 9 7 12 12 C 1.46500 * 119.99779 * 13.43277 * 11 10 9 13 13 C 1.53006 * 109.47022 * 123.52349 * 12 11 10 14 14 C 1.52996 * 109.47110 * 304.24291 * 13 12 11 15 15 C 1.52996 * 109.47104 * 64.25056 * 13 12 11 16 16 C 1.53008 * 109.46786 * 184.24418 * 13 12 11 17 17 C 1.50700 * 109.46770 * 182.49435 * 16 13 12 18 18 H 1.07998 * 120.00160 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99894 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99919 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00118 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46821 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46877 * 119.99845 * 21 19 17 24 24 H 1.48500 * 109.47217 * 239.99996 * 21 19 17 25 25 C 1.38265 * 119.90692 * 179.72599 * 4 3 2 26 26 H 1.08997 * 109.47202 * 59.99760 * 1 2 3 27 27 H 1.09001 * 109.47569 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47099 * 300.00301 * 1 2 3 29 29 H 1.09004 * 109.47099 * 239.99698 * 2 1 3 30 30 H 1.09011 * 109.47030 * 120.00308 * 2 1 3 31 31 H 1.07998 * 119.83559 * 0.02562 * 5 4 3 32 32 H 1.07996 * 119.92571 * 180.02562 * 6 5 4 33 33 H 0.96691 * 113.99917 * 84.99035 * 8 7 6 34 34 H 1.08005 * 119.99976 * 29.44651 * 10 9 7 35 35 H 1.09000 * 109.46866 * 243.52056 * 12 11 10 36 36 H 1.08994 * 109.47242 * 3.52510 * 12 11 10 37 37 H 1.09001 * 109.46734 * 64.76172 * 14 13 12 38 38 H 1.09003 * 109.46816 * 184.75858 * 14 13 12 39 39 H 1.08997 * 109.47705 * 304.76144 * 14 13 12 40 40 H 1.09000 * 109.47448 * 59.99495 * 15 13 12 41 41 H 1.08999 * 109.46950 * 179.97438 * 15 13 12 42 42 H 1.09007 * 109.46861 * 299.99250 * 15 13 12 43 43 H 1.08994 * 109.47211 * 302.49320 * 16 13 12 44 44 H 1.08998 * 109.47061 * 62.49787 * 16 13 12 45 45 H 0.96995 * 119.99990 * 179.97438 * 20 19 17 46 46 H 1.07998 * 120.08016 * 359.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5253 0.0005 5 6 4.1990 0.4222 0.0005 6 6 5.5693 0.5928 0.0005 7 6 6.1121 1.8682 0.0000 8 8 7.4598 2.0346 0.0006 9 6 5.2663 2.9853 0.0001 10 6 5.8352 4.3449 -0.0010 11 7 5.1849 5.3189 0.5499 12 6 4.0428 5.0360 1.4227 13 6 4.2782 5.6735 2.7935 14 6 5.6048 5.1723 3.3679 15 6 4.3286 7.1955 2.6464 16 6 3.1365 5.2899 3.7372 17 6 3.3363 5.9671 5.0686 18 1 4.1917 6.6073 5.2258 19 6 2.4270 5.7693 6.0859 20 7 1.3856 4.9892 5.8946 21 14 2.6750 6.6081 7.7365 22 1 3.9139 7.4258 7.6950 23 1 1.5125 7.4859 8.0252 24 1 2.7953 5.5799 8.8012 25 6 3.8810 2.8038 -0.0052 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7817 -0.5740 -0.0003 32 1 6.2196 -0.2695 0.0001 33 1 7.8600 2.0057 -0.8792 34 1 6.7947 4.5285 -0.4616 35 1 3.1364 5.4497 0.9805 36 1 3.9316 3.9579 1.5376 37 1 6.4261 5.5180 2.7401 38 1 5.7324 5.5595 4.3788 39 1 5.6011 4.0827 3.3939 40 1 3.3835 7.5525 2.2372 41 1 4.4959 7.6496 3.6230 42 1 5.1420 7.4688 1.9741 43 1 2.1870 5.6078 3.3067 44 1 3.1284 4.2089 3.8770 45 1 0.7461 4.8497 6.6105 46 1 3.2230 3.6602 -0.0105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806552837.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:30 Heat of formation + Delta-G solvation = -64.759891 kcal Electronic energy + Delta-G solvation = -25448.594643 eV Core-core repulsion = 21917.092864 eV Total energy + Delta-G solvation = -3531.501779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53404 -39.82841 -39.06673 -37.14354 -36.06355 -34.35631 -32.76475 -31.50539 -29.95782 -29.12596 -28.14065 -27.89436 -25.59710 -24.86145 -23.61668 -23.09389 -21.04751 -20.00051 -19.11816 -18.51684 -18.29891 -17.51837 -17.11383 -16.71759 -16.44814 -16.18658 -15.80117 -15.53511 -15.10129 -14.94077 -14.56420 -14.35010 -14.20364 -13.98927 -13.89780 -13.68230 -13.29604 -13.16243 -13.00445 -12.77086 -12.70255 -12.57612 -12.43015 -12.34285 -12.21856 -11.97626 -11.79295 -11.66890 -11.49170 -11.24361 -11.04608 -10.81137 -10.55204 -10.26520 -9.59452 -9.01682 -8.17284 -6.25411 -0.20966 0.27058 1.38114 1.38374 1.42208 1.51938 2.20772 2.41288 2.60123 3.16005 3.26349 3.45169 3.64174 3.71496 4.02880 4.03921 4.05062 4.11143 4.15413 4.28487 4.32444 4.33653 4.37259 4.63833 4.74398 4.77295 4.82326 4.86986 4.90344 4.92016 4.98791 5.09744 5.11570 5.14730 5.24068 5.26573 5.32284 5.41048 5.45314 5.48942 5.56425 5.65100 5.77512 5.86485 6.28869 6.38069 6.82506 6.89132 6.95832 7.41940 8.95558 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.004346 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.978744 B = 6440.798013 C = 7953.446874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 O -0.341 6.341 4 C 0.101 3.899 5 C -0.175 4.175 6 C -0.111 4.111 7 C 0.105 3.895 8 O -0.494 6.494 9 C -0.116 4.116 10 C 0.188 3.812 11 N -0.511 5.511 12 C 0.038 3.962 13 C -0.048 4.048 14 C -0.111 4.111 15 C -0.110 4.110 16 C 0.045 3.955 17 C -0.516 4.516 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.937 5.937 21 Si 0.960 3.040 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.139 4.139 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.413 0.587 34 H 0.197 0.803 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.026 0.974 40 H 0.032 0.968 41 H 0.046 0.954 42 H 0.063 0.937 43 H -0.016 1.016 44 H -0.020 1.020 45 H 0.261 0.739 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.399 -12.845 -17.711 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.256 6.256 4 C 0.056 3.944 5 C -0.195 4.195 6 C -0.129 4.129 7 C 0.057 3.943 8 O -0.307 6.307 9 C -0.119 4.119 10 C -0.022 4.022 11 N -0.216 5.216 12 C -0.091 4.091 13 C -0.049 4.049 14 C -0.168 4.168 15 C -0.167 4.167 16 C 0.008 3.992 17 C -0.554 4.554 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.578 5.578 21 Si 0.785 3.215 22 H -0.184 1.184 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.159 4.159 26 H 0.084 0.916 27 H 0.125 0.875 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.182 0.818 33 H 0.272 0.728 34 H 0.213 0.787 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.002 0.998 44 H -0.002 1.002 45 H 0.069 0.931 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.921 -11.679 -16.891 22.010 hybrid contribution -0.905 -0.686 0.653 1.310 sum 7.016 -12.365 -16.238 21.582 Atomic orbital electron populations 1.21830 0.92064 1.04294 1.02780 1.23107 0.96682 0.80523 1.02604 1.86122 1.18917 1.31823 1.88767 1.18995 0.83158 0.94134 0.98130 1.21509 0.93874 0.98601 1.05467 1.21521 0.94811 0.97503 0.99060 1.18370 0.83637 0.90890 1.01361 1.84802 1.15211 1.94780 1.35934 1.20214 0.92211 0.96333 1.03176 1.25236 0.97362 0.85254 0.94336 1.72045 1.09681 1.33390 1.06528 1.22779 0.93461 0.99452 0.93372 1.20469 0.96134 0.96164 0.92092 1.21552 0.96139 0.98638 1.00467 1.21549 1.00234 0.94319 1.00576 1.18953 0.92326 0.94059 0.93889 1.21602 1.08562 1.27756 0.97501 0.91567 1.25955 0.95017 0.96166 1.02890 1.70130 1.13947 1.39579 1.34192 0.85471 0.78466 0.78390 0.79209 1.18434 1.20550 1.20579 1.20700 0.94602 0.95807 1.04831 0.91650 0.87525 0.93203 0.89618 0.91417 0.82329 0.81761 0.72758 0.78662 0.91982 0.92763 0.92215 0.93289 0.95460 0.94849 0.93542 0.91856 0.99802 1.00215 0.93055 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.05 0.87 5.46 71.98 0.39 1.26 16 3 O -0.34 -9.96 10.13 -93.39 -0.95 -10.90 16 4 C 0.10 2.86 6.68 22.44 0.15 3.01 16 5 C -0.18 -3.70 9.03 22.40 0.20 -3.50 16 6 C -0.11 -2.09 9.97 22.32 0.22 -1.87 16 7 C 0.10 2.27 6.72 22.82 0.15 2.42 16 8 O -0.49 -8.24 12.88 -91.20 -1.17 -9.41 16 9 C -0.12 -3.14 5.28 -20.06 -0.11 -3.25 16 10 C 0.19 5.01 10.69 87.46 0.93 5.95 16 11 N -0.51 -17.23 9.15 -340.85 -3.12 -20.35 16 12 C 0.04 1.54 3.42 86.38 0.30 1.83 16 13 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 14 C -0.11 -4.71 8.04 71.98 0.58 -4.14 16 15 C -0.11 -4.66 8.07 71.98 0.58 -4.08 16 16 C 0.05 2.54 4.04 29.85 0.12 2.66 16 17 C -0.52 -30.14 7.59 25.60 0.19 -29.94 16 18 H 0.07 3.72 5.69 -2.91 -0.02 3.70 16 19 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 20 N -0.94 -59.20 13.29 21.45 0.28 -58.92 16 21 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 C -0.14 -4.34 7.27 22.63 0.16 -4.18 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 1.18 7.65 -2.38 -0.02 1.16 16 30 H 0.07 1.21 7.65 -2.38 -0.02 1.20 16 31 H 0.16 2.36 6.27 -2.91 -0.02 2.34 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.41 2.09 9.06 -74.06 -0.67 1.42 16 34 H 0.20 3.55 7.95 -2.91 -0.02 3.53 16 35 H 0.06 2.60 7.88 -2.39 -0.02 2.58 16 36 H 0.05 2.28 4.45 -2.39 -0.01 2.27 16 37 H 0.06 2.25 7.66 -2.39 -0.02 2.23 16 38 H 0.05 2.19 6.65 -2.39 -0.02 2.18 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 40 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 2.05 6.46 -2.39 -0.02 2.04 16 42 H 0.06 2.40 7.73 -2.38 -0.02 2.39 16 43 H -0.02 -1.01 8.14 -2.39 -0.02 -1.02 16 44 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 45 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.12 4.13 5.78 -2.91 -0.02 4.12 16 Total: -1.00 -76.26 369.15 2.44 -73.82 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.31 Total: 15.52 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 5.05 Total: -37.68 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -2.83 Total: -79.27 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -2.12 Total: -20.32 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -76.26 2.44 -73.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806552837.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.061 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds