Wall clock time and date at job start Tue Mar 31 2020 09:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.47102 * 2 1 4 4 C 1.35973 * 116.99866 * 180.02562 * 3 2 1 5 5 C 1.38724 * 119.98520 * 359.72562 * 4 3 2 6 6 C 1.38086 * 120.01274 * 179.72187 * 5 4 3 7 7 C 1.38841 * 119.98453 * 0.57485 * 6 5 4 8 8 N 1.40113 * 120.01719 * 179.67766 * 7 6 5 9 9 C 1.46499 * 120.00191 * 112.85162 * 8 7 6 10 10 C 1.34779 * 119.99870 * 292.85781 * 8 7 6 11 11 O 1.21288 * 119.99932 * 5.27203 * 10 8 7 12 12 C 1.50706 * 119.99821 * 185.27631 * 10 8 7 13 13 C 1.52999 * 109.46806 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46641 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46894 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46868 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00568 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99820 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00220 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99991 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46855 * 90.00175 * 20 18 16 22 22 H 1.48504 * 109.47387 * 209.99883 * 20 18 16 23 23 H 1.48497 * 109.47282 * 330.00107 * 20 18 16 24 24 C 1.38844 * 119.97190 * 359.70092 * 7 6 5 25 25 C 1.38092 * 119.98631 * 359.97438 * 24 7 6 26 26 H 1.08996 * 109.47055 * 59.99849 * 1 2 3 27 27 H 1.08995 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46654 * 299.99926 * 1 2 3 29 29 H 1.08996 * 109.47157 * 239.99914 * 2 1 3 30 30 H 1.09002 * 109.47431 * 120.00078 * 2 1 3 31 31 H 1.07996 * 119.99352 * 359.97438 * 5 4 3 32 32 H 1.07999 * 120.01063 * 180.27085 * 6 5 4 33 33 H 1.09010 * 109.47081 * 90.00209 * 9 8 7 34 34 H 1.08998 * 109.47729 * 210.00174 * 9 8 7 35 35 H 1.08998 * 109.47225 * 330.00849 * 9 8 7 36 36 H 1.09002 * 109.47085 * 300.00050 * 12 10 8 37 37 H 1.08996 * 109.47081 * 59.99712 * 12 10 8 38 38 H 1.08997 * 109.47157 * 299.99594 * 13 12 10 39 39 H 1.09004 * 109.47264 * 60.00296 * 13 12 10 40 40 H 1.09005 * 109.46853 * 299.99439 * 14 13 12 41 41 H 1.08996 * 109.47624 * 60.00092 * 14 13 12 42 42 H 1.08997 * 109.47006 * 299.99691 * 15 14 13 43 43 H 1.09004 * 109.46751 * 59.99891 * 15 14 13 44 44 H 0.97006 * 120.00253 * 179.97438 * 19 18 16 45 45 H 1.08007 * 120.00855 * 179.97438 * 24 7 6 46 46 H 1.08001 * 119.99474 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1991 0.4251 0.0047 6 6 5.5681 0.6053 -0.0017 7 6 6.0991 1.8881 -0.0012 8 7 7.4882 2.0718 -0.0008 9 6 8.1501 2.6565 -1.1697 10 6 8.2154 1.7103 1.0748 11 8 7.6828 1.1393 2.0029 12 6 9.6904 2.0158 1.1244 13 6 10.2730 1.5042 2.4434 14 6 11.7705 1.8138 2.4934 15 6 12.3533 1.3017 3.8122 16 6 13.8284 1.6060 3.8612 17 1 14.3028 2.1143 3.0347 18 6 14.5726 1.2356 4.9612 19 7 15.8598 1.5016 5.0043 20 14 13.7521 0.3572 6.3911 21 1 13.8088 -1.1100 6.1689 22 1 14.4607 0.6947 7.6518 23 1 12.3345 0.7885 6.4894 24 6 5.2531 2.9890 -0.0007 25 6 3.8842 2.8075 -0.0011 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7859 -0.5727 0.0096 32 1 6.2257 -0.2514 -0.0020 33 1 8.1901 3.7404 -1.0602 34 1 9.1630 2.2618 -1.2490 35 1 7.5897 2.4027 -2.0694 36 1 10.1914 1.5242 0.2905 37 1 9.8408 3.0931 1.0547 38 1 9.7719 1.9962 3.2770 39 1 10.1225 0.4269 2.5136 40 1 12.2713 1.3214 1.6598 41 1 11.9215 2.8910 2.4231 42 1 11.8526 1.7936 4.6460 43 1 12.2024 0.2244 3.8821 44 1 16.3832 1.2414 5.7784 45 1 5.6656 3.9873 0.0001 46 1 3.2260 3.6637 -0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807600812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:00 Heat of formation + Delta-G solvation = -83.425700 kcal Electronic energy + Delta-G solvation = -23811.326370 eV Core-core repulsion = 20279.015180 eV Total energy + Delta-G solvation = -3532.311189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69514 -40.69448 -38.61162 -36.67840 -36.24759 -34.61032 -32.86223 -32.04411 -31.89872 -30.02861 -27.91055 -27.22606 -25.02114 -24.44119 -23.22847 -22.42228 -21.70697 -20.34720 -19.33038 -18.86833 -18.18454 -17.65328 -17.37029 -17.05689 -16.64620 -16.33788 -15.76287 -15.61287 -15.16241 -14.78014 -14.62656 -14.50369 -14.34204 -14.10173 -13.85971 -13.74091 -13.62541 -13.52621 -13.27592 -13.16251 -12.86057 -12.84334 -12.69956 -12.32839 -12.06841 -11.87508 -11.75931 -11.67623 -11.49881 -11.33974 -11.26333 -10.86649 -10.75905 -10.11446 -10.05280 -9.02292 -8.29617 -6.32456 0.23121 0.27969 1.34227 1.35907 1.48651 1.55210 1.91407 2.22021 2.35695 2.63813 3.05795 3.63622 3.74811 3.84391 3.99902 4.03261 4.11141 4.12320 4.20815 4.23128 4.34966 4.37293 4.52420 4.58190 4.61770 4.70685 4.73314 4.75309 4.82885 4.89973 4.92795 4.96649 4.99521 5.13623 5.16998 5.19832 5.27671 5.29085 5.41019 5.47833 5.60291 5.65941 5.68695 5.86832 6.25441 6.29937 6.38157 6.75457 7.14079 7.32366 8.86830 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.002141 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.568480 B =13073.227758 C =13842.454589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.328 6.328 4 C 0.120 3.880 5 C -0.201 4.201 6 C -0.080 4.080 7 C 0.085 3.915 8 N -0.574 5.574 9 C 0.070 3.930 10 C 0.511 3.489 11 O -0.575 6.575 12 C -0.126 4.126 13 C -0.098 4.098 14 C -0.093 4.093 15 C -0.018 4.018 16 C -0.530 4.530 17 H 0.038 0.962 18 C 0.005 3.995 19 N -0.949 5.949 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.254 1.254 24 C -0.081 4.081 25 C -0.147 4.147 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.146 0.854 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.012 0.988 43 H 0.012 0.988 44 H 0.266 0.734 45 H 0.150 0.850 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.128 0.369 -17.684 35.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.242 6.242 4 C 0.074 3.926 5 C -0.220 4.220 6 C -0.100 4.100 7 C -0.006 4.006 8 N -0.304 5.304 9 C -0.070 4.070 10 C 0.302 3.698 11 O -0.453 6.453 12 C -0.165 4.165 13 C -0.136 4.136 14 C -0.131 4.131 15 C -0.055 4.055 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.770 3.230 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.178 1.178 24 C -0.100 4.100 25 C -0.166 4.166 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.075 0.925 45 H 0.167 0.833 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -31.385 0.199 -17.114 35.749 hybrid contribution 0.445 -0.679 0.880 1.197 sum -30.940 -0.480 -16.235 34.944 Atomic orbital electron populations 1.21801 0.91298 1.04171 1.03308 1.23073 0.97046 0.80812 1.02182 1.86075 1.18453 1.31197 1.88509 1.19170 0.82745 0.94374 0.96294 1.21278 0.93222 0.99214 1.08285 1.21107 0.95034 0.96644 0.97197 1.17717 0.83504 0.93373 1.05986 1.45556 1.04443 1.62951 1.17407 1.22214 0.99062 0.99694 0.86048 1.21456 0.90343 0.77053 0.80906 1.90697 1.73931 1.42455 1.38243 1.21725 0.89272 1.05100 1.00406 1.21298 0.94970 1.00756 0.96577 1.21335 0.93558 1.00675 0.97485 1.19581 0.93957 0.95991 0.95970 1.21547 0.94153 1.37487 1.03637 0.94317 1.25972 0.95259 0.96514 1.01464 1.70057 1.07904 1.49483 1.31598 0.85718 0.79586 0.79332 0.78391 1.19213 1.20705 1.17755 1.21196 0.92120 0.98951 0.97721 1.20534 0.94803 0.95485 1.05827 0.91475 0.88337 0.91946 0.90885 0.91704 0.83636 0.86454 0.90266 0.88698 0.89666 0.86165 0.86332 0.93208 0.93006 0.92199 0.92296 0.96915 0.96957 0.92528 0.83254 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 71.98 0.74 -0.45 16 2 C 0.04 0.51 5.46 71.98 0.39 0.91 16 3 O -0.33 -5.93 10.14 -93.24 -0.95 -6.88 16 4 C 0.12 2.35 6.69 22.50 0.15 2.50 16 5 C -0.20 -3.95 9.03 22.35 0.20 -3.75 16 6 C -0.08 -1.83 9.30 22.38 0.21 -1.62 16 7 C 0.08 1.88 4.83 38.11 0.18 2.06 16 8 N -0.57 -11.84 2.93 -654.42 -1.92 -13.76 16 9 C 0.07 0.79 10.10 127.77 1.29 2.08 16 10 C 0.51 13.82 7.55 87.66 0.66 14.48 16 11 O -0.57 -21.04 15.54 -3.06 -0.05 -21.09 16 12 C -0.13 -2.92 4.38 29.85 0.13 -2.79 16 13 C -0.10 -3.20 4.50 30.59 0.14 -3.06 16 14 C -0.09 -3.55 5.15 30.60 0.16 -3.39 16 15 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 16 C -0.53 -31.29 9.66 25.60 0.25 -31.04 16 17 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 18 C 0.00 0.28 5.47 84.65 0.46 0.74 16 19 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 20 Si 0.95 46.21 27.47 68.60 1.88 48.09 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.25 -11.85 6.54 99.48 0.65 -11.20 16 24 C -0.08 -1.50 9.85 22.38 0.22 -1.28 16 25 C -0.15 -2.69 9.98 22.35 0.22 -2.47 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.70 7.67 -2.39 -0.02 0.68 16 30 H 0.06 0.74 7.65 -2.39 -0.02 0.72 16 31 H 0.15 2.23 6.29 -2.91 -0.02 2.21 16 32 H 0.12 2.78 8.06 -2.91 -0.02 2.75 16 33 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 0.83 6.48 -2.39 -0.02 0.81 16 35 H 0.08 0.78 8.05 -2.39 -0.02 0.76 16 36 H 0.12 2.17 7.24 -2.39 -0.02 2.15 16 37 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 40 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 43 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 44 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 45 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 46 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -77.94 378.88 5.69 -72.25 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.88 Total: 9.41 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 5.53 Total: -27.81 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.62 Total: -73.97 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.99 Total: -27.97 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.88 Total: 48.09 kcal Total: -77.94 5.69 -72.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807600812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.174 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds