Wall clock time and date at job start Tue Mar 31 2020 09:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42895 * 109.46972 * 2 1 4 4 C 1.35903 * 116.99878 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.05482 * 180.02562 * 4 3 2 6 6 C 1.38140 * 119.94096 * 179.74683 * 5 4 3 7 7 C 1.38270 * 120.05829 * 0.25312 * 6 5 4 8 8 C 1.50697 * 119.94559 * 180.02562 * 7 6 5 9 9 H 1.09010 * 110.33367 * 340.70036 * 8 7 6 10 10 C 1.54900 * 110.37703 * 102.95372 * 8 7 6 11 11 C 1.55250 * 101.60380 * 155.81654 * 10 8 7 12 12 C 1.54319 * 103.08367 * 324.49240 * 11 10 8 13 13 N 1.47437 * 107.23480 * 22.20435 * 12 11 10 14 14 C 1.46903 * 111.00481 * 123.25707 * 13 12 11 15 15 C 1.52998 * 109.47238 * 173.16365 * 14 13 12 16 16 H 1.08995 * 109.47042 * 59.15851 * 15 14 13 17 17 O 1.42906 * 109.46980 * 299.15464 * 15 14 13 18 18 C 1.50706 * 109.46778 * 179.16043 * 15 14 13 19 19 H 1.07993 * 120.00302 * 359.97438 * 18 15 14 20 20 C 1.37873 * 119.99553 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00345 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 120.00006 * 179.97438 * 20 18 15 23 23 H 1.48509 * 109.46743 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47364 * 119.99839 * 22 20 18 25 25 H 1.48500 * 109.47149 * 240.00132 * 22 20 18 26 26 C 1.38259 * 120.11136 * 0.02562 * 7 6 5 27 27 C 1.38151 * 120.05571 * 359.97310 * 26 7 6 28 28 H 1.08998 * 109.46902 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46921 * 300.00019 * 1 2 3 30 30 H 1.08994 * 109.46695 * 60.00163 * 1 2 3 31 31 H 1.08993 * 109.47055 * 239.99664 * 2 1 3 32 32 H 1.09003 * 109.46527 * 119.99599 * 2 1 3 33 33 H 1.08002 * 120.02859 * 0.02562 * 5 4 3 34 34 H 1.08005 * 119.97362 * 180.27130 * 6 5 4 35 35 H 1.08997 * 110.99288 * 273.99784 * 10 8 7 36 36 H 1.09007 * 110.98683 * 37.80523 * 10 8 7 37 37 H 1.09005 * 110.74845 * 206.05709 * 11 10 8 38 38 H 1.09003 * 110.75589 * 82.93131 * 11 10 8 39 39 H 1.09001 * 109.89210 * 262.79384 * 12 11 10 40 40 H 1.09009 * 109.88903 * 141.60826 * 12 11 10 41 41 H 1.09000 * 109.46693 * 293.16783 * 14 13 12 42 42 H 1.08997 * 109.46824 * 53.16071 * 14 13 12 43 43 H 0.96694 * 114.00049 * 304.98143 * 17 15 14 44 44 H 0.97008 * 120.00311 * 180.02562 * 21 20 18 45 45 H 1.08001 * 119.97593 * 180.02562 * 26 7 6 46 46 H 1.08001 * 120.02980 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8852 2.8068 0.0011 6 6 5.2550 2.9851 0.0070 7 6 6.0962 1.8878 0.0069 8 6 7.5902 2.0852 0.0139 9 1 7.8408 3.0923 -0.3196 10 6 8.1616 1.8286 1.4306 11 6 9.6340 1.4546 1.1105 12 6 9.5160 0.6761 -0.2167 13 7 8.2464 1.0794 -0.8484 14 6 8.4758 1.6123 -2.1980 15 6 7.1308 1.8597 -2.8841 16 1 6.5472 2.5672 -2.2951 17 8 6.4169 0.6264 -2.9916 18 6 7.3658 2.4257 -4.2609 19 1 8.3736 2.5926 -4.6113 20 6 6.2941 2.7314 -5.0727 21 7 5.0669 2.5285 -4.6457 22 14 6.5853 3.4336 -6.7790 23 1 8.0452 3.5657 -7.0174 24 1 5.9976 2.5244 -7.7954 25 1 5.9448 4.7695 -6.8804 26 6 5.5691 0.6096 0.0005 27 6 4.1998 0.4260 -0.0053 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.2285 3.6643 0.0015 34 1 5.6693 3.9825 0.0118 35 1 8.1097 2.7296 2.0417 36 1 7.6456 0.9997 1.9154 37 1 10.0504 0.8207 1.8934 38 1 10.2403 2.3509 0.9789 39 1 9.5075 -0.3957 -0.0184 40 1 10.3516 0.9279 -0.8699 41 1 9.0267 2.5503 -2.1295 42 1 9.0533 0.8934 -2.7792 43 1 6.9096 -0.0756 -3.4382 44 1 4.3128 2.7433 -5.2170 45 1 6.2282 -0.2459 0.0010 46 1 3.7885 -0.5726 -0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809570509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:30 Heat of formation + Delta-G solvation = -59.094821 kcal Electronic energy + Delta-G solvation = -26282.266757 eV Core-core repulsion = 22751.010633 eV Total energy + Delta-G solvation = -3531.256123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.81640 -38.82974 -36.63653 -35.32780 -31.99905 -31.89068 -31.40096 -30.45057 -30.15505 -27.63383 -26.75408 -24.37611 -23.65365 -22.36409 -21.27414 -20.73939 -20.48677 -19.32103 -17.77668 -16.84391 -16.04651 -15.77718 -15.34766 -15.03670 -14.49144 -14.40887 -14.01025 -13.90417 -13.58113 -13.30719 -13.03656 -12.93034 -12.78679 -12.63242 -12.40734 -11.98301 -11.96102 -11.61633 -11.55714 -11.37285 -11.04241 -10.93495 -10.82380 -10.72134 -10.68421 -10.58854 -10.35354 -10.15355 -10.08325 -9.95806 -8.88301 -8.47066 -8.24074 -7.94032 -7.64857 -7.35499 -5.88731 -4.07273 2.05064 2.16184 3.30877 3.39262 3.41908 3.60085 4.30410 4.45206 4.62714 4.88588 5.04136 5.06265 5.12087 5.19826 5.36816 5.37881 5.46012 5.50493 5.56776 5.64413 5.68233 5.79159 5.88738 5.90499 5.97265 6.00094 6.04478 6.09690 6.15733 6.18299 6.23195 6.35259 6.36640 6.45559 6.69038 6.73016 6.87268 6.91372 7.06172 7.27793 7.41673 7.59702 7.70427 7.87252 7.97796 8.01622 8.33109 8.95387 9.57522 9.75108 11.13988 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.006487 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.045081 B = 4315.339476 C = 6716.928633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.124 3.876 5 C -0.151 4.151 6 C -0.074 4.074 7 C -0.089 4.089 8 C 0.120 3.880 9 H 0.057 0.943 10 C -0.120 4.120 11 C -0.142 4.142 12 C 0.040 3.960 13 N -0.513 5.513 14 C 0.025 3.975 15 C 0.239 3.761 16 H 0.061 0.939 17 O -0.545 6.545 18 C -0.576 4.576 19 H 0.050 0.950 20 C 0.083 3.917 21 N -0.850 5.850 22 Si 0.881 3.119 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.021 4.021 27 C -0.206 4.206 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.335 0.665 44 H 0.257 0.743 45 H 0.123 0.877 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -4.260 13.327 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.237 6.237 4 C 0.080 3.920 5 C -0.169 4.169 6 C -0.093 4.093 7 C -0.090 4.090 8 C 0.012 3.988 9 H 0.075 0.925 10 C -0.158 4.158 11 C -0.180 4.180 12 C -0.088 4.088 13 N -0.237 5.237 14 C -0.103 4.103 15 C 0.181 3.819 16 H 0.079 0.921 17 O -0.346 6.346 18 C -0.614 4.614 19 H 0.069 0.931 20 C -0.123 4.123 21 N -0.485 5.485 22 Si 0.709 3.291 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.040 4.040 27 C -0.225 4.225 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.177 0.823 44 H 0.067 0.933 45 H 0.141 0.859 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.064 -4.188 13.544 14.216 hybrid contribution 1.286 0.679 -1.617 2.175 sum 0.223 -3.509 11.927 12.434 Atomic orbital electron populations 1.21758 0.93370 1.02375 1.03242 1.22662 0.95265 0.82728 1.01246 1.85996 1.19911 1.28567 1.89212 1.18859 0.81531 0.94315 0.97342 1.20118 0.94890 0.94360 1.07569 1.20642 0.92247 0.98189 0.98186 1.19311 0.93699 0.93163 1.02832 1.21286 0.91331 0.94466 0.91717 0.92521 1.22778 0.94971 1.01587 0.96463 1.22802 0.97038 1.00143 0.98026 1.22817 0.91960 0.99831 0.94189 1.63500 1.19524 1.38195 1.02496 1.23315 1.02121 0.96746 0.88112 1.19333 0.85465 0.84135 0.92958 0.92118 1.86639 1.45485 1.22041 1.80417 1.21701 0.92600 1.45635 1.01494 0.93132 1.24976 0.95175 0.94473 0.97703 1.70113 0.97636 1.44942 1.35822 0.86744 0.78232 0.78855 0.85263 1.19895 1.20993 1.21024 1.20493 0.93145 0.96936 0.93395 1.21056 0.94639 0.97116 1.09691 0.90786 0.91897 0.91557 0.91971 0.92594 0.86267 0.86495 0.91216 0.90696 0.91284 0.91883 0.91172 0.93297 0.95709 0.92042 0.82332 0.93312 0.85878 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.76 5.46 37.16 0.20 0.96 16 3 O -0.32 -5.64 10.14 -19.43 -0.20 -5.83 16 4 C 0.12 2.34 6.69 -39.22 -0.26 2.08 16 5 C -0.15 -2.85 9.99 -39.43 -0.39 -3.24 16 6 C -0.07 -1.38 9.19 -39.61 -0.36 -1.74 16 7 C -0.09 -1.65 3.26 -104.60 -0.34 -1.99 16 8 C 0.12 2.03 2.14 -67.34 -0.14 1.89 16 9 H 0.06 1.03 7.57 -51.92 -0.39 0.63 16 10 C -0.12 -1.59 6.49 -24.54 -0.16 -1.75 16 11 C -0.14 -1.71 6.94 -24.85 -0.17 -1.89 16 12 C 0.04 0.57 6.89 -2.84 -0.02 0.56 16 13 N -0.51 -9.07 3.99 -224.75 -0.90 -9.97 16 14 C 0.02 0.51 4.07 -3.82 -0.02 0.50 16 15 C 0.24 6.02 2.33 -27.88 -0.06 5.95 16 16 H 0.06 1.69 5.88 -51.93 -0.31 1.38 16 17 O -0.55 -14.02 12.06 -35.23 -0.42 -14.45 16 18 C -0.58 -16.02 8.79 -34.44 -0.30 -16.32 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 20 C 0.08 2.37 5.40 -17.82 -0.10 2.27 16 21 N -0.85 -25.52 12.84 55.43 0.71 -24.81 16 22 Si 0.88 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 C -0.02 -0.39 8.67 -39.61 -0.34 -0.74 16 27 C -0.21 -3.74 9.04 -39.43 -0.36 -4.10 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.87 7.65 -51.93 -0.40 0.48 16 32 H 0.06 0.66 7.67 -51.93 -0.40 0.27 16 33 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.12 1.97 8.05 -52.48 -0.42 1.54 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.99 7.96 -51.92 -0.41 0.57 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.69 7.58 -51.92 -0.39 0.30 16 41 H 0.02 0.52 7.94 -51.93 -0.41 0.10 16 42 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 43 H 0.33 7.89 9.02 45.56 0.41 8.30 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.12 2.22 7.70 -52.49 -0.40 1.82 16 46 H 0.12 1.84 6.30 -52.49 -0.33 1.51 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -31.77 368.04 -9.54 -41.31 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.80 Total: 10.42 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -2.45 Total: -18.77 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.18 Total: -34.78 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.62 Total: -20.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.77 -9.54 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809570509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.789 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds