Wall clock time and date at job start Tue Mar 31 2020 09:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47414 * 2 1 4 4 C 1.35903 * 117.00048 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05206 * 180.02562 * 4 3 2 6 6 C 1.38150 * 119.94173 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05441 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.94489 * 179.97438 * 7 6 5 9 9 H 1.09009 * 110.45818 * 17.58460 * 8 7 6 10 10 C 1.54381 * 110.41335 * 255.17351 * 8 7 6 11 11 C 1.54252 * 105.06062 * 217.36608 * 10 8 7 12 12 C 1.54383 * 105.06031 * 359.97438 * 11 10 8 13 13 N 1.48557 * 104.59601 * 23.85340 * 12 11 10 14 14 C 1.46894 * 111.00159 * 200.95547 * 13 12 11 15 15 C 1.52997 * 109.47515 * 285.41911 * 14 13 12 16 16 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 17 17 O 1.42896 * 109.46906 * 300.00045 * 15 14 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 15 14 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 15 14 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 C 1.38266 * 120.11353 * 0.25075 * 7 6 5 27 27 C 1.38145 * 120.05212 * 359.45580 * 26 7 6 28 28 H 1.08995 * 109.46935 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46852 * 299.99751 * 1 2 3 30 30 H 1.09001 * 109.46874 * 59.99986 * 1 2 3 31 31 H 1.09007 * 109.47260 * 240.00195 * 2 1 3 32 32 H 1.09004 * 109.47354 * 120.00200 * 2 1 3 33 33 H 1.07999 * 120.03197 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.97154 * 179.97438 * 6 5 4 35 35 H 1.08996 * 110.31797 * 336.26579 * 10 8 7 36 36 H 1.09004 * 110.32162 * 98.36786 * 10 8 7 37 37 H 1.08999 * 110.32575 * 118.89765 * 11 10 8 38 38 H 1.09003 * 110.32795 * 241.00069 * 11 10 8 39 39 H 1.08996 * 110.41209 * 265.07349 * 12 11 10 40 40 H 1.09013 * 110.40926 * 142.62984 * 12 11 10 41 41 H 1.09002 * 109.47104 * 165.41643 * 14 13 12 42 42 H 1.08998 * 109.46828 * 45.42475 * 14 13 12 43 43 H 0.96708 * 114.00101 * 299.99268 * 17 15 14 44 44 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 45 45 H 1.07997 * 119.97364 * 179.70091 * 26 7 6 46 46 H 1.08007 * 120.02769 * 180.24471 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 3.8852 2.8067 0.0011 6 6 5.2552 2.9850 0.0011 7 6 6.0963 1.8877 0.0000 8 6 7.5903 2.0850 -0.0005 9 1 7.8407 3.0999 0.3086 10 6 8.1720 1.7894 -1.3997 11 6 9.5239 1.0959 -1.1334 12 6 9.6456 1.0315 0.4043 13 7 8.2445 1.0959 0.8938 14 6 8.1957 1.5382 2.2937 15 6 8.6476 0.3959 3.2057 16 1 9.6678 0.1092 2.9506 17 8 7.7796 -0.7256 3.0300 18 6 8.5981 0.8500 4.6418 19 1 8.2762 1.8530 4.8802 20 6 8.9629 -0.0152 5.6514 21 7 9.3545 -1.2367 5.3610 22 14 8.9009 0.5475 7.4315 23 1 7.5110 0.9384 7.7790 24 1 9.3397 -0.5613 8.3167 25 1 9.8033 1.7127 7.6141 26 6 5.5691 0.6095 -0.0063 27 6 4.1999 0.4259 -0.0002 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.2286 3.6642 0.0007 34 1 5.6694 3.9824 0.0012 35 1 7.5081 1.1251 -1.9529 36 1 8.3230 2.7177 -1.9508 37 1 9.5237 0.0912 -1.5560 38 1 10.3400 1.6829 -1.5547 39 1 10.2177 1.8814 0.7763 40 1 10.1124 0.0949 0.7098 41 1 7.1755 1.8250 2.5488 42 1 8.8577 2.3937 2.4276 43 1 6.8534 -0.5427 3.2395 44 1 9.6115 -1.8453 6.0713 45 1 6.2282 -0.2460 -0.0120 46 1 3.7885 -0.5728 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809570510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:35 Heat of formation + Delta-G solvation = -84.270576 kcal Electronic energy + Delta-G solvation = -25473.474516 eV Core-core repulsion = 21941.126690 eV Total energy + Delta-G solvation = -3532.347826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.80 seconds Orbital eigenvalues (eV) -41.23790 -40.14732 -38.20777 -37.27995 -34.22843 -33.13027 -32.95901 -31.90737 -31.47346 -29.49186 -28.10232 -26.28895 -24.89468 -23.83537 -22.90821 -22.38609 -21.28043 -21.01309 -19.18359 -19.00706 -17.36399 -17.00213 -16.84429 -16.65505 -16.53572 -16.01027 -15.66241 -15.52975 -15.01168 -14.81621 -14.59002 -14.33818 -14.30753 -13.86925 -13.82199 -13.46141 -13.32731 -13.18787 -13.08313 -12.81194 -12.64372 -12.54924 -12.49341 -12.12606 -12.07917 -12.00390 -11.90281 -11.59561 -11.46641 -11.34493 -11.00781 -10.69768 -10.09258 -9.86454 -9.25128 -8.96046 -8.13107 -6.39264 0.46333 0.53419 1.39039 1.40752 1.48883 2.30732 2.37793 2.81917 3.11919 3.17402 3.76562 3.83657 3.92823 4.01094 4.06485 4.09047 4.20121 4.22500 4.33388 4.37302 4.38644 4.46407 4.52993 4.54477 4.63636 4.71330 4.75280 4.87283 4.93215 4.95301 5.00325 5.03870 5.06310 5.19897 5.21666 5.24215 5.33223 5.39377 5.51811 5.59245 5.71183 5.78889 5.89189 6.02534 6.16193 6.25031 6.51342 6.73885 7.34381 7.60312 8.90985 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011063 B = 0.004284 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.279471 B = 6534.673300 C = 8220.346133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 O -0.331 6.331 4 C 0.114 3.886 5 C -0.163 4.163 6 C -0.079 4.079 7 C -0.112 4.112 8 C 0.099 3.901 9 H 0.056 0.944 10 C -0.105 4.105 11 C -0.113 4.113 12 C 0.030 3.970 13 N -0.501 5.501 14 C 0.045 3.955 15 C 0.245 3.755 16 H 0.017 0.983 17 O -0.566 6.566 18 C -0.591 4.591 19 H 0.055 0.945 20 C 0.028 3.972 21 N -0.898 5.898 22 Si 0.957 3.043 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.268 1.268 26 C -0.053 4.053 27 C -0.216 4.216 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.348 0.652 44 H 0.261 0.739 45 H 0.120 0.880 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 6.442 -15.367 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.246 6.246 4 C 0.069 3.931 5 C -0.181 4.181 6 C -0.098 4.098 7 C -0.113 4.113 8 C -0.009 4.009 9 H 0.074 0.926 10 C -0.143 4.143 11 C -0.151 4.151 12 C -0.098 4.098 13 N -0.224 5.224 14 C -0.084 4.084 15 C 0.187 3.813 16 H 0.035 0.965 17 O -0.368 6.368 18 C -0.629 4.629 19 H 0.073 0.927 20 C -0.174 4.174 21 N -0.535 5.535 22 Si 0.782 3.218 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.072 4.072 27 C -0.234 4.234 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.191 0.809 44 H 0.070 0.930 45 H 0.138 0.862 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.241 5.593 -15.499 19.947 hybrid contribution 0.274 0.759 1.641 1.828 sum -10.967 6.351 -13.859 18.780 Atomic orbital electron populations 1.21791 0.91182 1.04121 1.03275 1.23020 0.97057 0.81030 1.01904 1.86019 1.18846 1.30935 1.88809 1.19151 0.82469 0.94512 0.96986 1.20541 0.95305 0.95027 1.07263 1.21021 0.92061 0.99078 0.97601 1.19646 0.94503 0.93404 1.03739 1.21554 0.90780 0.94341 0.94213 0.92622 1.22313 0.96042 1.01453 0.94512 1.22265 0.97889 1.01708 0.93243 1.23091 0.90002 1.00246 0.96464 1.65260 1.12275 1.43497 1.01414 1.22751 0.99752 0.97101 0.88794 1.19037 0.88930 0.82596 0.90752 0.96515 1.86497 1.19941 1.39780 1.90627 1.22035 1.47851 0.99371 0.93655 0.92657 1.25860 0.93447 0.94647 1.03461 1.70214 1.43009 1.06427 1.33845 0.85654 0.78901 0.77973 0.79291 1.19351 1.20827 1.19293 1.20827 0.93922 0.97477 0.94925 1.21381 0.94183 0.98570 1.09287 0.88368 0.91953 0.91401 0.91238 0.92110 0.84090 0.83790 0.91056 0.89176 0.91021 0.89342 0.94354 0.92424 0.92371 0.95614 0.80867 0.93000 0.86227 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.26 16 2 C 0.04 0.84 5.46 71.98 0.39 1.23 16 3 O -0.33 -8.33 10.14 -92.46 -0.94 -9.27 16 4 C 0.11 3.10 6.69 22.51 0.15 3.25 16 5 C -0.16 -4.14 9.99 22.37 0.22 -3.92 16 6 C -0.08 -2.01 9.67 22.26 0.22 -1.79 16 7 C -0.11 -3.23 4.54 -19.85 -0.09 -3.32 16 8 C 0.10 2.85 2.45 44.32 0.11 2.96 16 9 H 0.06 1.56 7.88 -2.38 -0.02 1.54 16 10 C -0.11 -2.43 6.52 31.49 0.21 -2.23 16 11 C -0.11 -2.74 7.00 31.49 0.22 -2.52 16 12 C 0.03 1.00 5.91 86.45 0.51 1.51 16 13 N -0.50 -18.08 4.20 -861.10 -3.62 -21.70 16 14 C 0.04 1.90 4.38 86.30 0.38 2.28 16 15 C 0.24 12.91 2.88 29.85 0.09 12.99 16 16 H 0.02 1.00 7.47 -2.39 -0.02 0.98 16 17 O -0.57 -30.70 12.60 -148.98 -1.88 -32.58 16 18 C -0.59 -33.33 8.76 25.60 0.22 -33.10 16 19 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 20 C 0.03 1.62 5.40 84.66 0.46 2.08 16 21 N -0.90 -54.69 12.84 21.45 0.28 -54.41 16 22 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C -0.05 -1.61 9.13 22.25 0.20 -1.41 16 27 C -0.22 -5.98 9.04 22.37 0.20 -5.78 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.16 7.66 -2.38 -0.02 1.15 16 32 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 33 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.14 2.94 8.04 -2.91 -0.02 2.92 16 35 H 0.07 1.66 7.70 -2.39 -0.02 1.64 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.26 7.75 -2.39 -0.02 1.24 16 40 H 0.06 2.19 7.85 -2.38 -0.02 2.17 16 41 H 0.06 2.50 7.78 -2.39 -0.02 2.49 16 42 H 0.03 1.09 7.77 -2.39 -0.02 1.07 16 43 H 0.35 17.37 9.04 -74.05 -0.67 16.70 16 44 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.12 4.01 7.76 -2.91 -0.02 3.98 16 46 H 0.14 3.28 6.30 -2.91 -0.02 3.26 16 Total: -1.00 -67.53 372.35 0.39 -67.14 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.29 Total: 33.76 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 4.23 Total: -29.04 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -3.34 Total: -76.11 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -2.81 Total: -41.84 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -67.53 0.39 -67.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809570510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.128 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.80 seconds