Wall clock time and date at job start Tue Mar 31 2020 08:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47229 * 2 1 4 4 C 1.46503 * 120.00047 * 269.99908 * 3 2 1 5 5 C 1.53008 * 109.47036 * 270.00474 * 4 3 2 6 6 H 1.08992 * 109.46938 * 59.99787 * 5 4 3 7 7 C 1.52997 * 109.46753 * 179.97438 * 5 4 3 8 8 O 1.42894 * 109.46902 * 299.99424 * 5 4 3 9 9 C 1.42904 * 113.99895 * 150.00018 * 8 5 4 10 10 C 1.34777 * 119.99902 * 90.00427 * 3 2 1 11 11 O 1.21283 * 119.99353 * 179.97438 * 10 3 2 12 12 C 1.50692 * 119.99931 * 359.97438 * 10 3 2 13 13 C 1.50703 * 109.47000 * 180.02562 * 12 10 3 14 14 C 1.37645 * 120.13007 * 265.30719 * 13 12 10 15 15 C 1.38606 * 120.24649 * 180.32491 * 14 13 12 16 16 C 1.38653 * 120.50471 * 359.65965 * 15 14 13 17 17 C 1.37600 * 120.24898 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12867 * 84.99790 * 13 12 10 19 19 C 1.41400 * 120.24530 * 359.97438 * 18 13 12 20 20 H 1.07997 * 119.99846 * 25.87833 * 19 18 13 21 21 C 1.39940 * 120.00319 * 205.89169 * 19 18 13 22 22 N 1.30825 * 120.00152 * 16.29270 * 21 19 18 23 23 Si 1.86800 * 120.00144 * 196.30174 * 21 19 18 24 24 H 1.48501 * 109.46752 * 265.18129 * 23 21 19 25 25 H 1.48504 * 109.47299 * 25.17595 * 23 21 19 26 26 H 1.48497 * 109.47447 * 145.18067 * 23 21 19 27 27 H 1.09001 * 109.46749 * 299.99941 * 1 2 3 28 28 H 1.09001 * 109.47496 * 59.99518 * 1 2 3 29 29 H 1.08997 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46749 * 240.00059 * 2 1 3 31 31 H 1.09001 * 109.47496 * 120.00482 * 2 1 3 32 32 H 1.08997 * 109.47045 * 29.99933 * 4 3 2 33 33 H 1.09002 * 109.47263 * 150.00030 * 4 3 2 34 34 H 1.09000 * 109.47250 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47242 * 300.00200 * 7 5 4 36 36 H 1.09002 * 109.47310 * 59.99701 * 7 5 4 37 37 H 1.09007 * 109.46660 * 60.00248 * 9 8 5 38 38 H 1.08997 * 109.47185 * 180.02562 * 9 8 5 39 39 H 1.09004 * 109.47392 * 300.00470 * 9 8 5 40 40 H 1.09000 * 109.47297 * 60.00731 * 12 10 3 41 41 H 1.08997 * 109.47185 * 300.00030 * 12 10 3 42 42 H 1.07994 * 119.87429 * 0.02562 * 14 13 12 43 43 H 1.08002 * 119.74758 * 179.69746 * 15 14 13 44 44 H 1.07998 * 119.87893 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.12664 * 180.02562 * 17 16 15 46 46 H 0.97000 * 120.00761 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7076 1.8312 -1.7105 6 1 3.8744 0.7621 -1.8408 7 6 3.9623 2.5520 -3.0358 8 8 4.6001 2.3348 -0.7146 9 6 5.8406 1.6298 -0.6359 10 6 2.2430 2.0165 1.1672 11 8 2.6478 3.1598 1.1671 12 6 1.9914 1.3062 2.4722 13 6 2.3174 2.2297 3.6177 14 6 3.5608 2.1877 4.2066 15 6 3.8611 3.0313 5.2646 16 6 2.9176 3.9305 5.7374 17 6 1.6703 3.9944 5.1598 18 6 1.3542 3.1425 4.0851 19 6 0.0759 3.1996 3.4833 20 1 -0.3257 2.3295 2.9853 21 6 -0.6686 4.3834 3.5329 22 7 -0.0829 5.5122 3.8399 23 14 -2.4990 4.3519 3.1610 24 1 -2.7192 4.6862 1.7309 25 1 -3.0378 2.9968 3.4412 26 1 -3.1949 5.3477 4.0150 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 4.9919 2.3810 -3.3503 35 1 3.2814 2.1676 -3.7952 36 1 3.7953 3.6212 -2.9059 37 1 6.3571 1.6953 -1.5935 38 1 6.4612 2.0724 0.1432 39 1 5.6494 0.5835 -0.3970 40 1 2.6213 0.4186 2.5302 41 1 0.9433 1.0125 2.5298 42 1 4.3036 1.4916 3.8460 43 1 4.8376 2.9882 5.7239 44 1 3.1624 4.5834 6.5622 45 1 0.9370 4.6959 5.5294 46 1 -0.5990 6.3328 3.8746 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812775725.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:41 Heat of formation + Delta-G solvation = -85.514551 kcal Electronic energy + Delta-G solvation = -26400.922036 eV Core-core repulsion = 22868.520267 eV Total energy + Delta-G solvation = -3532.401769 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.95367 -39.42592 -38.68876 -36.66792 -35.45870 -33.80405 -32.89501 -31.32714 -30.98369 -28.97488 -27.59691 -27.11428 -26.22092 -24.13442 -22.83275 -22.55790 -21.53143 -19.76182 -18.98330 -18.05240 -17.54906 -17.23414 -17.01089 -16.54654 -16.22007 -15.88020 -15.64117 -15.33412 -14.94779 -14.62601 -14.42733 -14.35016 -13.94745 -13.73827 -13.48200 -13.32951 -13.29138 -13.15450 -12.97618 -12.86684 -12.75696 -12.62562 -12.53055 -12.34290 -12.31208 -12.10689 -11.86771 -11.62859 -11.28715 -11.14620 -10.99900 -10.60490 -10.41556 -9.40625 -9.19914 -9.14006 -8.55344 -6.24090 1.02020 1.15291 1.34333 1.47609 1.53778 2.09097 2.20871 2.28921 2.82377 2.96825 3.72524 3.95421 4.03941 4.12920 4.21618 4.28049 4.32688 4.38238 4.42859 4.47172 4.54527 4.57663 4.61119 4.70349 4.72918 4.77138 4.78889 4.83978 4.89232 4.94758 5.00907 5.05366 5.09542 5.26074 5.28793 5.38222 5.46273 5.57273 5.80608 5.87080 6.06545 6.16469 6.23379 6.44880 6.46240 6.67784 6.77844 7.01839 7.14518 7.67179 8.42559 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.005697 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.140585 B = 4913.426965 C = 6028.373374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.619 5.619 4 C 0.116 3.884 5 C 0.068 3.932 6 H 0.081 0.919 7 C -0.166 4.166 8 O -0.402 6.402 9 C 0.031 3.969 10 C 0.520 3.480 11 O -0.558 6.558 12 C -0.063 4.063 13 C -0.184 4.184 14 C -0.091 4.091 15 C -0.243 4.243 16 C -0.117 4.117 17 C -0.195 4.195 18 C 0.097 3.903 19 C -0.481 4.481 20 H 0.079 0.921 21 C 0.030 3.970 22 N -0.834 5.834 23 Si 0.973 3.027 24 H -0.270 1.270 25 H -0.247 1.247 26 H -0.269 1.269 27 H 0.034 0.966 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -13.743 -13.068 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.353 5.353 4 C -0.007 4.007 5 C 0.009 3.991 6 H 0.099 0.901 7 C -0.224 4.224 8 O -0.322 6.322 9 C -0.066 4.066 10 C 0.309 3.691 11 O -0.434 6.434 12 C -0.102 4.102 13 C -0.186 4.186 14 C -0.109 4.109 15 C -0.263 4.263 16 C -0.136 4.136 17 C -0.215 4.215 18 C 0.095 3.905 19 C -0.511 4.511 20 H 0.097 0.903 21 C -0.183 4.183 22 N -0.460 5.460 23 Si 0.794 3.206 24 H -0.195 1.195 25 H -0.171 1.171 26 H -0.193 1.193 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.138 0.862 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.838 -12.730 -12.922 18.360 hybrid contribution -0.518 0.711 0.045 0.881 sum 2.319 -12.019 -12.876 17.766 Atomic orbital electron populations 1.22226 0.95854 1.03254 1.01629 1.21789 0.94572 0.80914 1.04670 1.48019 1.67098 1.15321 1.04899 1.21633 0.95290 0.97756 0.86045 1.22710 0.89814 0.98253 0.88295 0.90108 1.22192 1.03083 1.00752 0.96400 1.88174 1.28150 1.57933 1.57920 1.22815 0.85880 0.96355 1.01523 1.20913 0.75984 0.86254 0.85912 1.90687 1.45290 1.19986 1.87484 1.20287 1.03117 0.97222 0.89598 1.19527 0.94650 1.04234 1.00153 1.20676 0.95264 0.98823 0.96166 1.20679 0.99690 1.02689 1.03193 1.20930 0.94439 0.98570 0.99624 1.21284 0.97108 1.03992 0.99106 1.17728 0.92870 0.90137 0.89752 1.19659 1.00923 0.97950 1.32535 0.90277 1.26762 1.04765 0.94238 0.92565 1.69946 1.39007 0.99836 1.37235 0.85342 0.76737 0.79899 0.78657 1.19531 1.17057 1.19314 0.94655 0.92421 0.88995 0.87553 0.89738 0.86235 0.93598 0.91528 0.88981 0.93723 0.92629 0.91033 0.93349 0.87944 0.88911 0.87036 0.86848 0.87802 0.88638 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 10.24 71.98 0.74 -2.71 16 2 C 0.10 2.07 5.93 86.38 0.51 2.59 16 3 N -0.62 -19.04 2.43 -821.81 -1.99 -21.03 16 4 C 0.12 3.22 5.18 86.38 0.45 3.67 16 5 C 0.07 1.65 2.99 30.60 0.09 1.74 16 6 H 0.08 1.51 7.79 -2.39 -0.02 1.50 16 7 C -0.17 -3.24 9.53 71.98 0.69 -2.56 16 8 O -0.40 -13.40 8.97 -140.59 -1.26 -14.66 16 9 C 0.03 0.75 10.82 113.37 1.23 1.98 16 10 C 0.52 22.10 7.18 87.65 0.63 22.73 16 11 O -0.56 -30.62 14.83 5.35 0.08 -30.54 16 12 C -0.06 -2.54 3.90 29.10 0.11 -2.43 16 13 C -0.18 -9.27 4.43 -19.40 -0.09 -9.36 16 14 C -0.09 -4.33 9.66 22.22 0.21 -4.11 16 15 C -0.24 -11.63 10.05 22.46 0.23 -11.40 16 16 C -0.12 -6.04 10.02 22.22 0.22 -5.82 16 17 C -0.20 -11.24 8.68 22.73 0.20 -11.04 16 18 C 0.10 5.54 5.56 -21.29 -0.12 5.42 16 19 C -0.48 -26.73 8.46 23.46 0.20 -26.53 16 20 H 0.08 4.11 6.36 -2.91 -0.02 4.10 16 21 C 0.03 1.62 5.16 85.26 0.44 2.06 16 22 N -0.83 -48.02 10.98 21.83 0.24 -47.78 16 23 Si 0.97 40.47 29.59 68.60 2.03 42.50 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 26 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 27 H 0.03 0.93 7.22 -2.39 -0.02 0.91 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.39 8.07 -2.39 -0.02 1.37 16 31 H 0.08 1.63 6.44 -2.39 -0.02 1.61 16 32 H 0.12 2.29 8.07 -2.39 -0.02 2.27 16 33 H 0.05 1.69 7.42 -2.39 -0.02 1.67 16 34 H 0.07 1.15 7.87 -2.39 -0.02 1.13 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.07 7.87 -2.38 -0.02 1.05 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.02 8.09 -2.39 -0.02 1.00 16 40 H 0.10 3.36 7.31 -2.39 -0.02 3.34 16 41 H 0.09 3.64 5.53 -2.39 -0.01 3.63 16 42 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 43 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 44 H 0.10 4.77 8.06 -2.91 -0.02 4.74 16 45 H 0.10 5.74 6.23 -2.91 -0.02 5.72 16 46 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 Total: -1.00 -78.59 373.36 5.78 -72.81 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.95 Total: 34.47 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 5.74 Total: -35.76 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -1.75 Total: -68.81 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -1.18 Total: -45.21 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -78.59 5.78 -72.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812775725.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.704 kcal (2) G-P(sol) polarization free energy of solvation -78.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds