Wall clock time and date at job start Tue Mar 31 2020 08:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46806 * 2 1 4 4 C 1.46505 * 119.99564 * 269.99667 * 3 2 1 5 5 C 1.53000 * 109.46798 * 90.00266 * 4 3 2 6 6 H 1.08993 * 109.47114 * 304.99581 * 5 4 3 7 7 C 1.53008 * 109.46782 * 184.99705 * 5 4 3 8 8 O 1.42903 * 109.47228 * 65.00214 * 5 4 3 9 9 C 1.42900 * 113.99565 * 209.99929 * 8 5 4 10 10 C 1.34780 * 120.00402 * 90.00090 * 3 2 1 11 11 O 1.21282 * 119.99793 * 179.97438 * 10 3 2 12 12 C 1.50698 * 119.99826 * 359.97438 * 10 3 2 13 13 C 1.50696 * 109.47162 * 180.02562 * 12 10 3 14 14 C 1.37645 * 120.12675 * 265.00318 * 13 12 10 15 15 C 1.38610 * 120.24774 * 179.97438 * 14 13 12 16 16 C 1.38654 * 120.50011 * 0.02562 * 15 14 13 17 17 C 1.37589 * 120.25260 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.13160 * 84.72413 * 13 12 10 19 19 C 1.41391 * 120.24162 * 359.97438 * 18 13 12 20 20 H 1.08001 * 120.00495 * 333.62700 * 19 18 13 21 21 C 1.39949 * 120.00251 * 153.62625 * 19 18 13 22 22 N 1.30823 * 119.99715 * 344.08447 * 21 19 18 23 23 Si 1.86802 * 120.00429 * 164.08500 * 21 19 18 24 24 H 1.48505 * 109.46787 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47448 * 119.99837 * 23 21 19 26 26 H 1.48498 * 109.46973 * 240.00298 * 23 21 19 27 27 H 1.09007 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47448 * 300.00361 * 1 2 3 29 29 H 1.08998 * 109.47799 * 60.00503 * 1 2 3 30 30 H 1.08990 * 109.47558 * 239.99905 * 2 1 3 31 31 H 1.09001 * 109.47230 * 119.99017 * 2 1 3 32 32 H 1.09003 * 109.46737 * 209.99625 * 4 3 2 33 33 H 1.08999 * 109.47231 * 330.00295 * 4 3 2 34 34 H 1.08997 * 109.46487 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47195 * 299.99826 * 7 5 4 36 36 H 1.08999 * 109.46681 * 60.00575 * 7 5 4 37 37 H 1.09004 * 109.46796 * 179.97438 * 9 8 5 38 38 H 1.09005 * 109.47363 * 299.99342 * 9 8 5 39 39 H 1.09005 * 109.47523 * 59.99898 * 9 8 5 40 40 H 1.09006 * 109.46906 * 300.00143 * 12 10 3 41 41 H 1.08994 * 109.47099 * 60.00249 * 12 10 3 42 42 H 1.07997 * 119.87248 * 359.97438 * 14 13 12 43 43 H 1.07996 * 119.74569 * 179.97438 * 15 14 13 44 44 H 1.08004 * 119.87338 * 180.02562 * 16 15 14 45 45 H 1.08008 * 120.13081 * 179.97438 * 17 16 15 46 46 H 0.96996 * 119.99902 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 0.9873 2.7930 -1.7105 6 1 0.1638 2.0804 -1.7550 7 6 1.2035 3.4097 -3.0940 8 8 0.6745 3.8248 -0.7727 9 6 -0.7231 4.0986 -0.6547 10 6 2.2429 2.0167 1.1672 11 8 2.6475 3.1600 1.1671 12 6 1.9912 1.3065 2.4723 13 6 2.3171 2.2300 3.6177 14 6 3.5585 2.1838 4.2107 15 6 3.8611 3.0324 5.2640 16 6 2.9195 3.9359 5.7327 17 6 1.6720 3.9988 5.1559 18 6 1.3558 3.1468 4.0813 19 6 0.0796 3.2077 3.4757 20 1 -0.0450 2.9038 2.4469 21 6 -1.0222 3.6619 4.2094 22 7 -0.9547 3.7334 5.5139 23 14 -2.5891 4.1661 3.3261 24 1 -2.4093 3.9937 1.8621 25 1 -3.7146 3.3160 3.7906 26 1 -2.8886 5.5898 3.6233 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.0642 2.7986 -1.1384 33 1 2.5505 1.3451 -2.0284 34 1 0.2950 3.9231 -3.4088 35 1 2.0271 4.1223 -3.0495 36 1 1.4421 2.6226 -3.8093 37 1 -0.8773 4.8925 0.0762 38 1 -1.1146 4.4137 -1.6219 39 1 -1.2435 3.1983 -0.3278 40 1 0.9431 1.0127 2.5298 41 1 2.6211 0.4189 2.5303 42 1 4.2993 1.4837 3.8539 43 1 4.8374 2.9890 5.7236 44 1 3.1663 4.5927 6.5538 45 1 0.9398 4.7030 5.5228 46 1 -1.7182 4.0486 6.0225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812775726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:52 Heat of formation + Delta-G solvation = -67.144913 kcal Electronic energy + Delta-G solvation = -26804.796376 eV Core-core repulsion = 23273.191175 eV Total energy + Delta-G solvation = -3531.605202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.58826 -37.88490 -37.10556 -35.33371 -33.53216 -32.46336 -31.30420 -30.04816 -29.36051 -27.40017 -26.39752 -25.44889 -24.70166 -23.03160 -21.29134 -20.83875 -19.92420 -18.40815 -17.06534 -16.84123 -16.20275 -15.78842 -15.36225 -15.17388 -14.58819 -14.40409 -14.19882 -13.56463 -13.49887 -13.38448 -13.06487 -12.89385 -12.60895 -12.57304 -12.40234 -12.09793 -11.93320 -11.68242 -11.49111 -11.46160 -11.25728 -11.15304 -11.03577 -10.86573 -10.77636 -10.58174 -10.38783 -10.29602 -9.39597 -9.35878 -9.25982 -9.09421 -8.86716 -8.18103 -7.21290 -7.18515 -6.65383 -4.24173 2.83189 3.04559 3.09178 3.12270 3.32852 3.47945 3.60266 3.97787 4.06765 4.74385 4.95953 4.99338 5.18305 5.20036 5.23099 5.39849 5.50146 5.51185 5.63137 5.65803 5.71591 5.80262 5.83066 5.87571 5.95144 6.04028 6.11413 6.14649 6.21743 6.27452 6.31311 6.37537 6.55978 6.59781 6.89679 7.00603 7.18022 7.39151 7.51862 7.56893 7.74145 7.95690 8.04280 8.18882 8.22424 8.41390 8.75101 9.01703 9.08325 9.11798 10.29081 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.006727 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.824488 B = 4161.083368 C = 5426.922521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 N -0.628 5.628 4 C 0.121 3.879 5 C 0.064 3.936 6 H 0.058 0.942 7 C -0.172 4.172 8 O -0.354 6.354 9 C 0.035 3.965 10 C 0.519 3.481 11 O -0.500 6.500 12 C -0.069 4.069 13 C -0.178 4.178 14 C -0.083 4.083 15 C -0.239 4.239 16 C -0.109 4.109 17 C -0.159 4.159 18 C 0.130 3.870 19 C -0.449 4.449 20 H 0.076 0.924 21 C 0.076 3.924 22 N -0.799 5.799 23 Si 0.897 3.103 24 H -0.259 1.259 25 H -0.277 1.277 26 H -0.273 1.273 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.029 0.971 39 H 0.037 0.963 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 -6.794 -13.272 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.014 4.014 3 N -0.364 5.364 4 C -0.002 4.002 5 C 0.004 3.996 6 H 0.076 0.924 7 C -0.231 4.231 8 O -0.272 6.272 9 C -0.061 4.061 10 C 0.307 3.693 11 O -0.371 6.371 12 C -0.108 4.108 13 C -0.180 4.180 14 C -0.101 4.101 15 C -0.258 4.258 16 C -0.127 4.127 17 C -0.178 4.178 18 C 0.128 3.872 19 C -0.479 4.479 20 H 0.094 0.906 21 C -0.141 4.141 22 N -0.425 5.425 23 Si 0.722 3.278 24 H -0.183 1.183 25 H -0.202 1.202 26 H -0.198 1.198 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.134 0.866 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.244 -5.995 -12.931 14.255 hybrid contribution -1.213 0.098 -0.530 1.328 sum -1.457 -5.898 -13.460 14.768 Atomic orbital electron populations 1.22341 0.96447 1.01823 1.02875 1.21470 0.94273 0.83043 1.02632 1.48081 1.68701 1.13788 1.05830 1.21451 0.96977 0.96135 0.85655 1.22662 0.98028 0.90073 0.88836 0.92393 1.22246 1.02596 1.01543 0.96678 1.88189 1.22779 1.55078 1.61123 1.22767 0.82686 1.00877 0.99812 1.21065 0.76610 0.86915 0.84679 1.90686 1.42773 1.17054 1.86630 1.20307 1.02769 0.97217 0.90526 1.19110 0.96235 1.01781 1.00835 1.20289 0.94954 0.98369 0.96523 1.20285 0.98668 1.03858 1.03025 1.20659 0.94676 0.98396 0.98981 1.21287 0.95182 1.01331 0.99979 1.17326 0.91732 0.87900 0.90286 1.19496 0.91872 1.37933 0.98591 0.90611 1.25865 1.00497 0.93184 0.94509 1.69832 1.31491 1.34778 1.06374 0.86461 0.81167 0.79112 0.81107 1.18251 1.20226 1.19813 0.91925 0.91453 0.92877 0.91204 0.90162 0.89403 0.90260 0.92594 0.91618 0.91991 0.89623 0.95208 0.94467 0.88924 0.91115 0.89905 0.89786 0.89710 0.86610 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 10.21 37.16 0.38 -1.66 16 2 C 0.11 1.27 5.98 -4.04 -0.02 1.25 16 3 N -0.63 -9.76 2.46 -173.69 -0.43 -10.18 16 4 C 0.12 1.68 5.18 -4.04 -0.02 1.66 16 5 C 0.06 0.88 2.96 -26.73 -0.08 0.80 16 6 H 0.06 0.75 5.76 -51.93 -0.30 0.45 16 7 C -0.17 -1.90 9.53 37.16 0.35 -1.55 16 8 O -0.35 -6.50 9.14 -42.94 -0.39 -6.89 16 9 C 0.04 0.58 10.82 101.05 1.09 1.67 16 10 C 0.52 10.57 6.91 -10.98 -0.08 10.49 16 11 O -0.50 -12.46 14.83 -2.16 -0.03 -12.50 16 12 C -0.07 -1.40 3.73 -29.04 -0.11 -1.51 16 13 C -0.18 -4.41 4.43 -103.91 -0.46 -4.87 16 14 C -0.08 -1.98 9.66 -39.66 -0.38 -2.36 16 15 C -0.24 -5.74 10.05 -39.29 -0.39 -6.14 16 16 C -0.11 -2.73 10.02 -39.66 -0.40 -3.13 16 17 C -0.16 -4.34 8.68 -38.88 -0.34 -4.68 16 18 C 0.13 3.55 5.56 -106.83 -0.59 2.96 16 19 C -0.45 -11.96 8.13 -37.74 -0.31 -12.26 16 20 H 0.08 2.00 6.68 -52.49 -0.35 1.65 16 21 C 0.08 1.93 5.17 -17.34 -0.09 1.84 16 22 N -0.80 -20.96 10.95 55.55 0.61 -20.35 16 23 Si 0.90 18.92 29.59 -169.99 -5.03 13.89 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.96 7.22 -51.93 -0.37 0.59 16 29 H 0.05 0.60 6.14 -51.93 -0.32 0.28 16 30 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 31 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16 32 H 0.09 1.42 7.42 -51.93 -0.39 1.04 16 33 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 34 H 0.05 0.59 7.87 -51.93 -0.41 0.19 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.03 0.40 7.87 -51.93 -0.41 -0.01 16 39 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.09 1.88 6.13 -51.93 -0.32 1.56 16 41 H 0.07 1.23 7.31 -51.93 -0.38 0.85 16 42 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.08 1.91 8.06 -52.48 -0.42 1.49 16 45 H 0.12 3.26 6.21 -52.48 -0.33 2.94 16 46 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -32.02 369.27 -8.39 -40.42 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.24 Total: 7.53 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.45 Total: -17.48 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.18 Total: -30.53 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.42 Total: -19.39 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.02 -8.39 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812775726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.730 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds