Wall clock time and date at job start Tue Mar 31 2020 08:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46806 * 2 1 4 4 C 1.46505 * 119.99564 * 269.99667 * 3 2 1 5 5 C 1.53000 * 109.46798 * 90.00266 * 4 3 2 6 6 H 1.08993 * 109.47114 * 304.99581 * 5 4 3 7 7 C 1.53008 * 109.46782 * 184.99705 * 5 4 3 8 8 O 1.42903 * 109.47228 * 65.00214 * 5 4 3 9 9 C 1.42900 * 113.99565 * 209.99929 * 8 5 4 10 10 C 1.34780 * 120.00402 * 90.00090 * 3 2 1 11 11 O 1.21282 * 119.99793 * 179.97438 * 10 3 2 12 12 C 1.50698 * 119.99826 * 359.97438 * 10 3 2 13 13 C 1.50696 * 109.47162 * 180.02562 * 12 10 3 14 14 C 1.37645 * 120.12675 * 265.00318 * 13 12 10 15 15 C 1.38610 * 120.24774 * 179.97438 * 14 13 12 16 16 C 1.38654 * 120.50011 * 0.02562 * 15 14 13 17 17 C 1.37589 * 120.25260 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.13160 * 84.72413 * 13 12 10 19 19 C 1.41391 * 120.24162 * 359.97438 * 18 13 12 20 20 H 1.08001 * 120.00495 * 333.62700 * 19 18 13 21 21 C 1.39949 * 120.00251 * 153.62625 * 19 18 13 22 22 N 1.30823 * 119.99715 * 344.08447 * 21 19 18 23 23 Si 1.86802 * 120.00429 * 164.08500 * 21 19 18 24 24 H 1.48505 * 109.46787 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47448 * 119.99837 * 23 21 19 26 26 H 1.48498 * 109.46973 * 240.00298 * 23 21 19 27 27 H 1.09007 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47448 * 300.00361 * 1 2 3 29 29 H 1.08998 * 109.47799 * 60.00503 * 1 2 3 30 30 H 1.08990 * 109.47558 * 239.99905 * 2 1 3 31 31 H 1.09001 * 109.47230 * 119.99017 * 2 1 3 32 32 H 1.09003 * 109.46737 * 209.99625 * 4 3 2 33 33 H 1.08999 * 109.47231 * 330.00295 * 4 3 2 34 34 H 1.08997 * 109.46487 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.47195 * 299.99826 * 7 5 4 36 36 H 1.08999 * 109.46681 * 60.00575 * 7 5 4 37 37 H 1.09004 * 109.46796 * 179.97438 * 9 8 5 38 38 H 1.09005 * 109.47363 * 299.99342 * 9 8 5 39 39 H 1.09005 * 109.47523 * 59.99898 * 9 8 5 40 40 H 1.09006 * 109.46906 * 300.00143 * 12 10 3 41 41 H 1.08994 * 109.47099 * 60.00249 * 12 10 3 42 42 H 1.07997 * 119.87248 * 359.97438 * 14 13 12 43 43 H 1.07996 * 119.74569 * 179.97438 * 15 14 13 44 44 H 1.08004 * 119.87338 * 180.02562 * 16 15 14 45 45 H 1.08008 * 120.13081 * 179.97438 * 17 16 15 46 46 H 0.96996 * 119.99902 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 0.9873 2.7930 -1.7105 6 1 0.1638 2.0804 -1.7550 7 6 1.2035 3.4097 -3.0940 8 8 0.6745 3.8248 -0.7727 9 6 -0.7231 4.0986 -0.6547 10 6 2.2429 2.0167 1.1672 11 8 2.6475 3.1600 1.1671 12 6 1.9912 1.3065 2.4723 13 6 2.3171 2.2300 3.6177 14 6 3.5585 2.1838 4.2107 15 6 3.8611 3.0324 5.2640 16 6 2.9195 3.9359 5.7327 17 6 1.6720 3.9988 5.1559 18 6 1.3558 3.1468 4.0813 19 6 0.0796 3.2077 3.4757 20 1 -0.0450 2.9038 2.4469 21 6 -1.0222 3.6619 4.2094 22 7 -0.9547 3.7334 5.5139 23 14 -2.5891 4.1661 3.3261 24 1 -2.4093 3.9937 1.8621 25 1 -3.7146 3.3160 3.7906 26 1 -2.8886 5.5898 3.6233 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.0642 2.7986 -1.1384 33 1 2.5505 1.3451 -2.0284 34 1 0.2950 3.9231 -3.4088 35 1 2.0271 4.1223 -3.0495 36 1 1.4421 2.6226 -3.8093 37 1 -0.8773 4.8925 0.0762 38 1 -1.1146 4.4137 -1.6219 39 1 -1.2435 3.1983 -0.3278 40 1 0.9431 1.0127 2.5298 41 1 2.6211 0.4189 2.5303 42 1 4.2993 1.4837 3.8539 43 1 4.8374 2.9890 5.7236 44 1 3.1663 4.5927 6.5538 45 1 0.9398 4.7030 5.5228 46 1 -1.7182 4.0486 6.0225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812775726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:47 Heat of formation + Delta-G solvation = -85.315811 kcal Electronic energy + Delta-G solvation = -26805.584326 eV Core-core repulsion = 23273.191175 eV Total energy + Delta-G solvation = -3532.393151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.79 seconds Orbital eigenvalues (eV) -41.01192 -39.43116 -38.70069 -36.69200 -35.47554 -33.78156 -32.84237 -31.32126 -31.10663 -28.96955 -27.68514 -27.08334 -26.25998 -24.14384 -22.80494 -22.41840 -21.62864 -19.85497 -19.00129 -18.15808 -17.54725 -17.25248 -16.86480 -16.59105 -16.19680 -15.92025 -15.66842 -15.29977 -14.97311 -14.61225 -14.45467 -14.38013 -13.97492 -13.75937 -13.57765 -13.47694 -13.36082 -13.03776 -12.93733 -12.89227 -12.76277 -12.66148 -12.45648 -12.40046 -12.34417 -12.08853 -11.94642 -11.48604 -11.28044 -11.16139 -11.02310 -10.62475 -10.43131 -9.44429 -9.19676 -9.12557 -8.57356 -6.25250 1.00052 1.15187 1.32166 1.45985 1.50604 1.99391 2.19223 2.29724 2.80358 2.94612 3.73956 3.95298 4.03399 4.13172 4.17970 4.27702 4.32668 4.33092 4.38714 4.46385 4.49396 4.56888 4.62856 4.71459 4.73152 4.76429 4.80301 4.81929 4.85894 4.94791 5.01104 5.07404 5.10822 5.22782 5.29781 5.38492 5.44269 5.57422 5.80297 5.85757 6.06509 6.20682 6.23392 6.41457 6.45221 6.63896 6.77502 7.03122 7.14501 7.59770 8.39330 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.006727 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.824488 B = 4161.083368 C = 5426.922521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 N -0.618 5.618 4 C 0.118 3.882 5 C 0.057 3.943 6 H 0.071 0.929 7 C -0.164 4.164 8 O -0.395 6.395 9 C 0.037 3.963 10 C 0.519 3.481 11 O -0.558 6.558 12 C -0.065 4.065 13 C -0.186 4.186 14 C -0.094 4.094 15 C -0.242 4.242 16 C -0.119 4.119 17 C -0.193 4.193 18 C 0.097 3.903 19 C -0.469 4.469 20 H 0.069 0.931 21 C 0.035 3.965 22 N -0.830 5.830 23 Si 0.961 3.039 24 H -0.251 1.251 25 H -0.262 1.262 26 H -0.272 1.272 27 H 0.090 0.910 28 H 0.031 0.969 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 -9.106 -15.835 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.352 5.352 4 C -0.005 4.005 5 C -0.002 4.002 6 H 0.089 0.911 7 C -0.222 4.222 8 O -0.314 6.314 9 C -0.060 4.060 10 C 0.308 3.692 11 O -0.435 6.435 12 C -0.105 4.105 13 C -0.188 4.188 14 C -0.112 4.112 15 C -0.261 4.261 16 C -0.137 4.137 17 C -0.213 4.213 18 C 0.095 3.905 19 C -0.499 4.499 20 H 0.087 0.913 21 C -0.179 4.179 22 N -0.457 5.457 23 Si 0.782 3.218 24 H -0.174 1.174 25 H -0.187 1.187 26 H -0.197 1.197 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.273 -8.364 -15.524 17.636 hybrid contribution -1.110 0.732 0.251 1.353 sum -1.383 -7.632 -15.273 17.130 Atomic orbital electron populations 1.22296 0.96346 1.03154 1.01282 1.21834 0.94314 0.80879 1.05028 1.48059 1.67028 1.15116 1.05043 1.21706 0.96271 0.96748 0.85784 1.22920 0.98218 0.89651 0.89387 0.91080 1.22186 1.02351 1.02209 0.95480 1.88153 1.23554 1.56747 1.62931 1.22727 0.82365 1.00024 1.00852 1.20937 0.76150 0.86163 0.85935 1.90663 1.45869 1.19374 1.87574 1.20282 1.03152 0.97428 0.89589 1.19610 0.96090 1.01448 1.01608 1.20720 0.95317 0.98857 0.96285 1.20691 0.99581 1.02991 1.02851 1.20931 0.94212 0.99120 0.99470 1.21289 0.96070 1.02256 1.01664 1.17727 0.92976 0.88899 0.90923 1.19556 0.92525 1.39481 0.98333 0.91321 1.26647 1.03520 0.92615 0.95077 1.69895 1.32771 1.35321 1.07685 0.85489 0.77315 0.78717 0.80286 1.17426 1.18671 1.19697 0.89118 0.95019 0.92471 0.86937 0.89665 0.92341 0.85368 0.92207 0.92881 0.88677 0.92013 0.92084 0.94799 0.89335 0.87778 0.86746 0.86741 0.87793 0.88677 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.52 10.21 71.98 0.74 -2.79 16 2 C 0.10 2.00 5.98 86.38 0.52 2.51 16 3 N -0.62 -18.08 2.46 -821.81 -2.02 -20.10 16 4 C 0.12 3.01 5.18 86.38 0.45 3.45 16 5 C 0.06 1.47 2.96 30.60 0.09 1.56 16 6 H 0.07 1.63 5.76 -2.39 -0.01 1.62 16 7 C -0.16 -3.18 9.53 71.98 0.69 -2.49 16 8 O -0.39 -14.62 9.14 -141.61 -1.29 -15.91 16 9 C 0.04 1.21 10.82 113.37 1.23 2.43 16 10 C 0.52 21.13 6.91 87.66 0.61 21.74 16 11 O -0.56 -28.71 14.83 4.34 0.06 -28.65 16 12 C -0.06 -2.64 3.73 29.10 0.11 -2.53 16 13 C -0.19 -9.36 4.43 -19.40 -0.09 -9.44 16 14 C -0.09 -4.41 9.66 22.22 0.21 -4.20 16 15 C -0.24 -11.49 10.05 22.46 0.23 -11.27 16 16 C -0.12 -6.11 10.02 22.22 0.22 -5.89 16 17 C -0.19 -11.12 8.68 22.73 0.20 -10.92 16 18 C 0.10 5.53 5.56 -21.29 -0.12 5.41 16 19 C -0.47 -26.14 8.13 23.46 0.19 -25.95 16 20 H 0.07 3.80 6.68 -2.91 -0.02 3.78 16 21 C 0.04 1.84 5.17 85.26 0.44 2.28 16 22 N -0.83 -45.38 10.95 21.83 0.24 -45.14 16 23 Si 0.96 39.86 29.59 68.60 2.03 41.89 16 24 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.03 0.87 7.22 -2.38 -0.02 0.85 16 29 H 0.06 1.11 6.14 -2.39 -0.01 1.10 16 30 H 0.11 1.35 7.89 -2.39 -0.02 1.33 16 31 H 0.09 1.62 6.44 -2.39 -0.02 1.61 16 32 H 0.06 1.87 7.42 -2.39 -0.02 1.86 16 33 H 0.13 1.99 7.89 -2.39 -0.02 1.97 16 34 H 0.06 1.11 7.87 -2.39 -0.02 1.09 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.06 1.55 7.87 -2.38 -0.02 1.53 16 39 H 0.03 1.09 8.09 -2.38 -0.02 1.07 16 40 H 0.09 3.65 6.13 -2.38 -0.01 3.63 16 41 H 0.10 3.41 7.31 -2.39 -0.02 3.39 16 42 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 44 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 45 H 0.10 5.72 6.21 -2.91 -0.02 5.70 16 46 H 0.28 14.09 8.30 -92.71 -0.77 13.33 16 Total: -1.00 -75.22 369.27 5.69 -69.54 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.96 Total: 34.45 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 5.70 Total: -36.08 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -1.78 Total: -65.24 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -1.23 Total: -44.55 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -75.22 5.69 -69.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812775726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.779 kcal (2) G-P(sol) polarization free energy of solvation -75.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.79 seconds