Wall clock time and date at job start Tue Mar 31 2020 08:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47136 * 2 1 4 4 C 1.46504 * 119.99661 * 90.00560 * 3 2 1 5 5 C 1.53006 * 109.46883 * 269.99401 * 4 3 2 6 6 H 1.09001 * 109.46998 * 59.99945 * 5 4 3 7 7 O 1.42895 * 109.47000 * 300.00472 * 5 4 3 8 8 C 1.50698 * 109.47184 * 179.97438 * 5 4 3 9 9 C 1.38239 * 119.99707 * 84.72939 * 8 5 4 10 10 C 1.38235 * 120.00056 * 179.76597 * 9 8 5 11 11 C 1.38234 * 119.99853 * 0.50851 * 10 9 8 12 12 C 1.50699 * 120.00221 * 179.72414 * 11 10 9 13 13 C 1.38237 * 119.99789 * 359.74497 * 11 10 9 14 14 C 1.38232 * 120.00418 * 0.02562 * 13 11 10 15 15 C 1.34774 * 120.00002 * 269.99833 * 3 2 1 16 16 O 1.21288 * 119.99888 * 180.02562 * 15 3 2 17 17 C 1.50698 * 120.00423 * 0.02562 * 15 3 2 18 18 C 1.52992 * 109.47346 * 179.97438 * 17 15 3 19 19 C 1.50703 * 109.47015 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99843 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99848 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99726 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00084 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47248 * 90.00128 * 23 21 19 25 25 H 1.48503 * 109.47235 * 210.00167 * 23 21 19 26 26 H 1.48501 * 109.47337 * 329.99924 * 23 21 19 27 27 H 1.09000 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46958 * 300.00053 * 1 2 3 29 29 H 1.09003 * 109.47092 * 59.99393 * 1 2 3 30 30 H 1.09000 * 109.46958 * 239.99947 * 2 1 3 31 31 H 1.09000 * 109.47408 * 120.00189 * 2 1 3 32 32 H 1.09001 * 109.46891 * 149.99835 * 4 3 2 33 33 H 1.08993 * 109.47378 * 29.99208 * 4 3 2 34 34 H 0.96696 * 114.00485 * 299.99339 * 7 5 4 35 35 H 1.08004 * 120.00227 * 359.97438 * 9 8 5 36 36 H 1.08002 * 119.99826 * 180.22895 * 10 9 8 37 37 H 1.08994 * 109.47178 * 270.02226 * 12 11 10 38 38 H 1.09000 * 109.46691 * 30.02266 * 12 11 10 39 39 H 1.08997 * 109.47065 * 150.02149 * 12 11 10 40 40 H 1.08004 * 119.99740 * 179.97438 * 13 11 10 41 41 H 1.07998 * 120.00339 * 179.97438 * 14 13 11 42 42 H 1.09004 * 109.46777 * 300.00065 * 17 15 3 43 43 H 1.08998 * 109.46770 * 59.99671 * 17 15 3 44 44 H 1.09004 * 109.47395 * 299.99882 * 18 17 15 45 45 H 1.08998 * 109.47295 * 60.00188 * 18 17 15 46 46 H 0.97006 * 120.00064 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 0.9876 2.7931 1.7105 6 1 0.1856 2.0664 1.8408 7 8 0.6099 3.7457 0.7146 8 6 1.2386 3.5029 3.0160 9 6 1.8018 4.7653 3.0191 10 6 2.0277 5.4184 4.2163 11 6 1.6999 4.8049 5.4109 12 6 1.9518 5.5143 6.7164 13 6 1.1415 3.5403 5.4079 14 6 0.9113 2.8891 4.2106 15 6 2.2430 2.0165 -1.1672 16 8 2.6477 3.1599 -1.1671 17 6 1.9913 1.3064 -2.4723 18 6 2.3223 2.2439 -3.6351 19 6 2.0700 1.5339 -4.9403 20 1 1.7093 0.5160 -4.9403 21 6 2.2997 2.1840 -6.1343 22 7 2.0791 1.5645 -7.2733 23 14 2.9230 3.9449 -6.1343 24 1 4.4080 3.9445 -6.1347 25 1 2.4279 4.6453 -7.3466 26 1 2.4285 4.6450 -4.9216 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.0645 2.7984 1.1384 33 1 2.5506 1.3450 2.0284 34 1 1.2778 4.4244 0.5462 35 1 2.0624 5.2427 2.0860 36 1 2.4643 6.4062 4.2185 37 1 2.9517 5.2705 7.0753 38 1 1.8721 6.5909 6.5660 39 1 1.2137 5.1946 7.4519 40 1 0.8858 3.0608 6.3413 41 1 0.4754 1.9010 4.2083 42 1 2.6212 0.4187 -2.5302 43 1 0.9433 1.0126 -2.5298 44 1 1.6921 3.1314 -3.5771 45 1 3.3702 2.5381 -3.5778 46 1 2.2411 2.0217 -8.1134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813472411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:46 Heat of formation + Delta-G solvation = -76.927184 kcal Electronic energy + Delta-G solvation = -25100.243205 eV Core-core repulsion = 21568.213812 eV Total energy + Delta-G solvation = -3532.029393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26568 -39.36644 -37.07249 -35.52839 -33.48370 -33.13603 -31.47180 -31.16523 -30.69349 -29.22872 -27.04080 -25.56559 -23.26504 -23.24904 -22.82025 -20.95142 -20.73246 -18.68461 -17.58495 -17.20147 -16.31521 -16.14389 -15.79162 -15.52721 -15.25994 -14.75367 -14.28432 -14.11308 -13.98818 -13.86938 -13.65991 -13.64156 -13.33424 -12.88278 -12.60559 -12.56246 -12.48149 -12.29665 -12.01719 -11.83226 -11.68858 -11.33463 -11.31177 -11.22020 -10.98016 -10.81985 -10.30393 -10.08817 -9.95872 -9.74250 -9.18206 -9.17656 -9.10020 -8.87787 -8.47963 -8.36168 -5.99903 -3.98143 1.02801 1.15111 3.09417 3.24488 3.40150 3.46605 3.48153 3.58111 4.42701 4.45576 4.52831 4.53934 4.65382 4.74983 4.78714 4.96032 4.98450 5.00327 5.21519 5.22192 5.24781 5.29610 5.35738 5.40032 5.45545 5.48321 5.52923 5.68294 5.77373 5.79985 5.84074 5.91852 6.10585 6.13850 6.15711 6.25716 6.32125 6.38106 6.68145 6.73791 6.76221 7.40877 7.49150 7.64482 7.70835 7.83600 8.53363 8.68998 9.03401 9.63442 11.12983 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.003061 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.889275 B = 9145.904143 C =10093.104878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.090 3.910 5 C 0.132 3.868 6 H 0.105 0.895 7 O -0.543 6.543 8 C -0.117 4.117 9 C -0.104 4.104 10 C -0.117 4.117 11 C -0.090 4.090 12 C -0.114 4.114 13 C -0.120 4.120 14 C -0.107 4.107 15 C 0.521 3.479 16 O -0.539 6.539 17 C -0.120 4.120 18 C 0.002 3.998 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.068 3.932 22 N -0.904 5.904 23 Si 0.878 3.122 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.261 1.261 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.378 0.622 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.024 0.976 45 H 0.017 0.983 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 1.076 28.747 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.352 5.352 4 C -0.034 4.034 5 C 0.071 3.929 6 H 0.123 0.877 7 O -0.350 6.350 8 C -0.118 4.118 9 C -0.122 4.122 10 C -0.135 4.135 11 C -0.090 4.090 12 C -0.171 4.171 13 C -0.138 4.138 14 C -0.125 4.125 15 C 0.312 3.688 16 O -0.416 6.416 17 C -0.160 4.160 18 C -0.036 4.036 19 C -0.561 4.561 20 H 0.090 0.910 21 C -0.133 4.133 22 N -0.543 5.543 23 Si 0.705 3.295 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.185 1.185 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.228 0.772 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.042 0.958 45 H 0.036 0.964 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.791 1.353 28.508 28.596 hybrid contribution 0.751 1.062 0.007 1.301 sum -1.040 2.414 28.516 28.637 Atomic orbital electron populations 1.22284 0.95964 1.02021 1.02862 1.21571 0.94578 0.82374 1.03205 1.48025 1.67653 1.14105 1.05438 1.22062 0.97438 0.97648 0.86234 1.21303 0.97517 0.90256 0.83855 0.87689 1.86611 1.46959 1.42867 1.58514 1.20602 0.99649 0.95712 0.95875 1.20957 0.98295 0.94633 0.98323 1.21018 1.00593 1.00021 0.91858 1.19948 0.98734 0.94971 0.95365 1.20792 1.02081 1.00130 0.94097 1.20999 1.00146 0.94773 0.97919 1.20955 0.99966 0.99814 0.91792 1.21421 0.75238 0.86672 0.85499 1.90575 1.45399 1.18227 1.87354 1.21693 1.02807 1.00372 0.91111 1.19363 0.97024 0.94991 0.92177 1.21123 1.44881 1.01191 0.88906 0.90998 1.24974 0.94866 0.97989 0.95463 1.69916 1.49497 1.37526 0.97400 0.86792 0.79421 0.85517 0.77799 1.20318 1.21504 1.18482 0.91697 0.92736 0.91577 0.89571 0.90948 0.89687 0.90197 0.77224 0.85908 0.85990 0.91177 0.91547 0.91596 0.86077 0.85962 0.89929 0.89640 0.95788 0.96432 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 37.16 0.38 -1.42 16 2 C 0.11 1.14 5.97 -4.04 -0.02 1.11 16 3 N -0.62 -8.54 2.43 -173.69 -0.42 -8.96 16 4 C 0.09 1.07 5.18 -4.04 -0.02 1.05 16 5 C 0.13 1.53 3.48 -27.88 -0.10 1.44 16 6 H 0.11 1.17 6.17 -51.93 -0.32 0.85 16 7 O -0.54 -8.10 11.95 -43.94 -0.52 -8.62 16 8 C -0.12 -1.24 5.00 -104.62 -0.52 -1.76 16 9 C -0.10 -1.10 9.33 -39.58 -0.37 -1.47 16 10 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 11 C -0.09 -0.78 5.88 -104.62 -0.62 -1.40 16 12 C -0.11 -0.70 10.01 36.00 0.36 -0.34 16 13 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 14 C -0.11 -0.98 9.68 -39.59 -0.38 -1.36 16 15 C 0.52 9.60 7.18 -10.99 -0.08 9.52 16 16 O -0.54 -11.51 14.35 -3.16 -0.05 -11.56 16 17 C -0.12 -2.39 4.19 -27.89 -0.12 -2.51 16 18 C 0.00 0.06 3.33 -27.89 -0.09 -0.03 16 19 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 20 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 23 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 26 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.54 6.26 -51.93 -0.33 0.21 16 29 H 0.07 0.84 7.22 -51.93 -0.37 0.47 16 30 H 0.09 0.95 6.44 -51.93 -0.33 0.62 16 31 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 32 H 0.08 1.14 7.42 -51.93 -0.39 0.75 16 33 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 34 H 0.38 5.37 6.80 45.56 0.31 5.68 16 35 H 0.12 1.25 6.63 -52.48 -0.35 0.90 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 39 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 40 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.08 1.52 7.40 -51.93 -0.38 1.14 16 43 H 0.09 1.62 7.18 -51.93 -0.37 1.25 16 44 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 45 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -34.68 369.85 -8.75 -43.43 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.66 Total: 3.05 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.78 Total: -13.59 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.35 Total: -36.46 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.57 Total: -20.18 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.68 -8.75 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813472411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.498 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds