Wall clock time and date at job start Tue Mar 31 2020 09:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46662 * 2 1 4 4 C 1.42906 * 113.99918 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47207 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47355 * 60.00086 * 5 4 3 7 7 C 1.52997 * 109.47290 * 299.99883 * 5 4 3 8 8 N 1.46507 * 109.47103 * 179.97438 * 5 4 3 9 9 C 1.34773 * 120.00266 * 180.02562 * 8 5 4 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 8 5 11 11 C 1.50694 * 120.00092 * 180.02562 * 9 8 5 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 8 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.09001 * 109.47593 * 299.99607 * 1 2 3 27 27 H 1.09008 * 109.47572 * 59.99778 * 1 2 3 28 28 H 1.09002 * 109.47084 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47092 * 240.00485 * 2 1 3 30 30 H 1.08991 * 109.47485 * 120.00071 * 2 1 3 31 31 H 1.08992 * 109.46972 * 59.99901 * 4 3 2 32 32 H 1.09003 * 109.46624 * 300.00444 * 4 3 2 33 33 H 1.08995 * 109.47176 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46822 * 300.00220 * 6 5 4 35 35 H 1.09003 * 109.47082 * 59.99332 * 6 5 4 36 36 H 1.09003 * 109.46889 * 299.99900 * 7 5 4 37 37 H 1.08997 * 109.47131 * 60.00262 * 7 5 4 38 38 H 1.09004 * 109.47115 * 180.02562 * 7 5 4 39 39 H 0.97000 * 119.99705 * 0.02562 * 8 5 4 40 40 H 1.09001 * 109.46892 * 59.99768 * 11 9 8 41 41 H 1.08991 * 109.47294 * 299.99778 * 11 9 8 42 42 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 43 43 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 44 44 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 45 45 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 46 46 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 0.0001 6 6 3.2604 3.6165 1.2500 7 6 3.2593 3.6179 -1.2484 8 7 5.2857 3.0542 0.0001 9 6 5.8653 4.2710 0.0012 10 8 5.1778 5.2701 0.0017 11 6 7.3676 4.3900 0.0007 12 6 7.7562 5.8461 0.0015 13 6 8.0278 6.4893 -1.1847 14 6 8.3919 7.8267 -1.1863 15 6 8.4800 8.5335 0.0034 16 6 8.2069 7.9125 1.2005 17 6 7.8362 6.5548 1.2141 18 6 7.5524 5.9064 2.4382 19 1 6.8993 5.0465 2.4549 20 6 8.1177 6.3790 3.6279 21 7 9.2407 7.0495 3.5975 22 14 7.2688 6.0525 5.2596 23 1 8.0646 6.6527 6.3604 24 1 5.9127 6.6572 5.2417 25 1 7.1548 4.5874 5.4738 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8332 0.9769 -0.8907 32 1 3.8339 0.9765 0.8892 33 1 3.5418 4.6695 1.2507 34 1 2.1739 3.5303 1.2505 35 1 3.6636 3.1324 2.1396 36 1 3.6618 3.1349 -2.1389 37 1 2.1727 3.5319 -1.2480 38 1 3.5407 4.6710 -1.2481 39 1 5.8355 2.2551 -0.0006 40 1 7.7699 3.9074 -0.8900 41 1 7.7707 3.9055 0.8899 42 1 7.9617 5.9486 -2.1173 43 1 8.6082 8.3221 -2.1212 44 1 8.7642 9.5753 -0.0096 45 1 8.2758 8.4649 2.1259 46 1 9.7250 7.1467 2.7627 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818024412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:43 Heat of formation + Delta-G solvation = -83.292638 kcal Electronic energy + Delta-G solvation = -25521.146017 eV Core-core repulsion = 21988.840598 eV Total energy + Delta-G solvation = -3532.305419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.84988 -38.37986 -37.52204 -35.46737 -33.80435 -32.26293 -31.55474 -30.51460 -29.16461 -27.00875 -26.72453 -26.33213 -24.83802 -23.04135 -21.34578 -20.88736 -19.65105 -19.21403 -17.71398 -16.84451 -16.72498 -16.32016 -15.37290 -14.98446 -14.79000 -14.32205 -14.25641 -14.10198 -13.87996 -13.47789 -13.17020 -13.03282 -12.66908 -12.63629 -12.28199 -12.00634 -11.88357 -11.71774 -11.68410 -11.55178 -11.46609 -11.18439 -11.15016 -10.83814 -10.79418 -10.65951 -10.42661 -10.35786 -9.81747 -9.60494 -9.33507 -8.95691 -8.90984 -8.69764 -7.50802 -7.45908 -7.07892 -4.37373 2.76749 2.89092 3.17033 3.18315 3.32077 3.35850 3.40460 3.96839 4.05743 4.63216 4.69083 4.75059 4.87041 4.97379 5.09071 5.10295 5.34662 5.39428 5.47389 5.56903 5.64802 5.72422 5.83563 5.91492 5.99408 6.02456 6.09700 6.14740 6.18528 6.21826 6.37257 6.40751 6.56499 6.66719 6.73538 6.86452 7.01943 7.04903 7.25786 7.46918 7.72442 7.87473 7.90731 7.97769 8.01375 8.25827 8.39626 8.83572 8.90581 8.97574 10.11531 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.004015 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.701420 B = 6972.874405 C = 8346.455403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.377 6.377 4 C 0.065 3.935 5 C 0.179 3.821 6 C -0.159 4.159 7 C -0.156 4.156 8 N -0.739 5.739 9 C 0.521 3.479 10 O -0.512 6.512 11 C -0.070 4.070 12 C -0.183 4.183 13 C -0.069 4.069 14 C -0.253 4.253 15 C -0.087 4.087 16 C -0.216 4.216 17 C 0.117 3.883 18 C -0.516 4.516 19 H 0.072 0.928 20 C 0.041 3.959 21 N -0.800 5.800 22 Si 1.059 2.941 23 H -0.274 1.274 24 H -0.275 1.275 25 H -0.277 1.277 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.393 0.607 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 -14.316 -4.879 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.296 6.296 4 C -0.012 4.012 5 C 0.093 3.907 6 C -0.217 4.217 7 C -0.214 4.214 8 N -0.395 5.395 9 C 0.308 3.692 10 O -0.386 6.386 11 C -0.110 4.110 12 C -0.185 4.185 13 C -0.087 4.087 14 C -0.273 4.273 15 C -0.105 4.105 16 C -0.235 4.235 17 C 0.114 3.886 18 C -0.544 4.544 19 H 0.090 0.910 20 C -0.181 4.181 21 N -0.423 5.423 22 Si 0.883 3.117 23 H -0.199 1.199 24 H -0.200 1.200 25 H -0.203 1.203 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.226 0.774 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.122 0.878 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.320 -13.067 -3.240 16.963 hybrid contribution 0.350 -1.025 -1.734 2.045 sum -9.970 -14.092 -4.974 17.965 Atomic orbital electron populations 1.21736 0.93695 1.02124 1.03271 1.22458 0.95631 0.83882 0.99983 1.87882 1.20219 1.26112 1.95388 1.22586 0.81992 0.96357 1.00313 1.20034 0.80683 0.92799 0.97205 1.22150 1.00742 1.03232 0.95542 1.22129 1.00895 1.02904 0.95475 1.46175 1.05793 1.08893 1.78628 1.21082 0.91304 0.82084 0.74693 1.90624 1.64738 1.36399 1.46794 1.20258 0.90475 0.97587 1.02698 1.18994 1.12980 0.92791 0.93703 1.20351 0.98507 0.94407 0.95460 1.20256 1.15455 0.95369 0.96187 1.20599 0.99230 0.97371 0.93304 1.21137 1.10736 0.95117 0.96554 1.17386 0.88212 0.90906 0.92108 1.20434 1.27144 1.14461 0.92356 0.90953 1.26907 0.94732 0.92011 1.04455 1.70451 1.10365 1.27979 1.33523 0.83728 0.76563 0.77309 0.74102 1.19913 1.20008 1.20283 0.91748 0.91821 0.91207 0.93522 0.93436 0.93032 0.92868 0.89891 0.91683 0.93109 0.93419 0.91600 0.90146 0.77423 0.90747 0.88738 0.89668 0.89517 0.89444 0.87798 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.38 -4.34 8.99 -35.23 -0.32 -4.65 16 4 C 0.06 0.72 4.92 37.16 0.18 0.90 16 5 C 0.18 2.51 0.89 -131.82 -0.12 2.40 16 6 C -0.16 -2.51 8.25 37.16 0.31 -2.20 16 7 C -0.16 -2.29 8.26 37.16 0.31 -1.99 16 8 N -0.74 -10.80 5.11 -47.61 -0.24 -11.04 16 9 C 0.52 9.97 6.88 -10.99 -0.08 9.90 16 10 O -0.51 -11.87 12.24 5.56 0.07 -11.80 16 11 C -0.07 -1.37 5.18 -29.03 -0.15 -1.52 16 12 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 13 C -0.07 -1.59 9.66 -39.66 -0.38 -1.97 16 14 C -0.25 -5.89 10.05 -39.29 -0.39 -6.28 16 15 C -0.09 -2.10 10.02 -39.66 -0.40 -2.50 16 16 C -0.22 -5.73 7.95 -38.87 -0.31 -6.04 16 17 C 0.12 3.10 5.30 -106.82 -0.57 2.53 16 18 C -0.52 -13.58 8.08 -37.74 -0.30 -13.89 16 19 H 0.07 1.87 6.73 -52.49 -0.35 1.52 16 20 C 0.04 1.04 4.94 -17.34 -0.09 0.95 16 21 N -0.80 -21.30 12.31 55.55 0.68 -20.62 16 22 Si 1.06 22.13 30.00 -169.99 -5.10 17.03 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.60 6.16 -51.93 -0.32 1.28 16 34 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 38 H 0.08 1.43 6.17 -51.93 -0.32 1.11 16 39 H 0.39 4.44 8.47 -40.82 -0.35 4.10 16 40 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 41 H 0.09 1.82 7.06 -51.93 -0.37 1.46 16 42 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 45 H 0.10 2.84 6.49 -52.49 -0.34 2.50 16 46 H 0.30 8.16 6.68 -40.82 -0.27 7.88 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -30.53 370.37 -8.55 -39.08 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.40 Total: 10.94 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -1.82 Total: -24.52 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.44 Total: -31.66 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.25 Total: -16.46 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.10 Total: 17.03 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.53 -8.55 -39.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818024412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.208 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds