Wall clock time and date at job start Tue Mar 31 2020 09:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46662 * 2 1 4 4 C 1.42906 * 113.99918 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47207 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47355 * 60.00086 * 5 4 3 7 7 C 1.52997 * 109.47290 * 299.99883 * 5 4 3 8 8 N 1.46507 * 109.47103 * 179.97438 * 5 4 3 9 9 C 1.34773 * 120.00266 * 180.02562 * 8 5 4 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 8 5 11 11 C 1.50694 * 120.00092 * 180.02562 * 9 8 5 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 8 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.09001 * 109.47593 * 299.99607 * 1 2 3 27 27 H 1.09008 * 109.47572 * 59.99778 * 1 2 3 28 28 H 1.09002 * 109.47084 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47092 * 240.00485 * 2 1 3 30 30 H 1.08991 * 109.47485 * 120.00071 * 2 1 3 31 31 H 1.08992 * 109.46972 * 59.99901 * 4 3 2 32 32 H 1.09003 * 109.46624 * 300.00444 * 4 3 2 33 33 H 1.08995 * 109.47176 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46822 * 300.00220 * 6 5 4 35 35 H 1.09003 * 109.47082 * 59.99332 * 6 5 4 36 36 H 1.09003 * 109.46889 * 299.99900 * 7 5 4 37 37 H 1.08997 * 109.47131 * 60.00262 * 7 5 4 38 38 H 1.09004 * 109.47115 * 180.02562 * 7 5 4 39 39 H 0.97000 * 119.99705 * 0.02562 * 8 5 4 40 40 H 1.09001 * 109.46892 * 59.99768 * 11 9 8 41 41 H 1.08991 * 109.47294 * 299.99778 * 11 9 8 42 42 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 43 43 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 44 44 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 45 45 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 46 46 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 0.0001 6 6 3.2604 3.6165 1.2500 7 6 3.2593 3.6179 -1.2484 8 7 5.2857 3.0542 0.0001 9 6 5.8653 4.2710 0.0012 10 8 5.1778 5.2701 0.0017 11 6 7.3676 4.3900 0.0007 12 6 7.7562 5.8461 0.0015 13 6 8.0278 6.4893 -1.1847 14 6 8.3919 7.8267 -1.1863 15 6 8.4800 8.5335 0.0034 16 6 8.2069 7.9125 1.2005 17 6 7.8362 6.5548 1.2141 18 6 7.5524 5.9064 2.4382 19 1 6.8993 5.0465 2.4549 20 6 8.1177 6.3790 3.6279 21 7 9.2407 7.0495 3.5975 22 14 7.2688 6.0525 5.2596 23 1 8.0646 6.6527 6.3604 24 1 5.9127 6.6572 5.2417 25 1 7.1548 4.5874 5.4738 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8332 0.9769 -0.8907 32 1 3.8339 0.9765 0.8892 33 1 3.5418 4.6695 1.2507 34 1 2.1739 3.5303 1.2505 35 1 3.6636 3.1324 2.1396 36 1 3.6618 3.1349 -2.1389 37 1 2.1727 3.5319 -1.2480 38 1 3.5407 4.6710 -1.2481 39 1 5.8355 2.2551 -0.0006 40 1 7.7699 3.9074 -0.8900 41 1 7.7707 3.9055 0.8899 42 1 7.9617 5.9486 -2.1173 43 1 8.6082 8.3221 -2.1212 44 1 8.7642 9.5753 -0.0096 45 1 8.2758 8.4649 2.1259 46 1 9.7250 7.1467 2.7627 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818024412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:42 Heat of formation + Delta-G solvation = -101.186213 kcal Electronic energy + Delta-G solvation = -25521.921941 eV Core-core repulsion = 21988.840598 eV Total energy + Delta-G solvation = -3533.081343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.22494 -39.71253 -38.95225 -36.71937 -35.71928 -33.80144 -32.68981 -31.58374 -31.07854 -28.39312 -28.23812 -27.33714 -26.73230 -23.66292 -22.86451 -22.76949 -21.28077 -20.53979 -19.60227 -18.10481 -17.67962 -17.05355 -16.89669 -16.60608 -16.43242 -15.84956 -15.65083 -15.32936 -15.30162 -14.92421 -14.66459 -14.20282 -14.04268 -13.85569 -13.67819 -13.53146 -13.20324 -13.11069 -13.03608 -12.92924 -12.63105 -12.54890 -12.31606 -12.28435 -12.20700 -12.05149 -11.98684 -11.70411 -11.46636 -11.19939 -10.82598 -10.55342 -10.48533 -10.01931 -9.42492 -9.40642 -9.03671 -6.37344 0.92776 1.00398 1.46823 1.62245 1.76048 1.86859 2.06731 2.31494 2.72545 3.00159 3.58979 3.74318 3.86293 4.07009 4.11850 4.21062 4.30837 4.32293 4.40832 4.47788 4.51384 4.54056 4.58200 4.60656 4.74175 4.80856 4.81498 4.87032 4.93312 4.93981 5.02217 5.06921 5.09695 5.29473 5.34031 5.34843 5.36231 5.52129 5.65934 5.82007 5.86453 6.01023 6.07229 6.24641 6.31625 6.47365 6.72881 6.89063 7.04504 7.50010 8.10267 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.004015 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.701420 B = 6972.874405 C = 8346.455403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.399 6.399 4 C 0.073 3.927 5 C 0.176 3.824 6 C -0.154 4.154 7 C -0.148 4.148 8 N -0.718 5.718 9 C 0.522 3.478 10 O -0.559 6.559 11 C -0.070 4.070 12 C -0.186 4.186 13 C -0.080 4.080 14 C -0.251 4.251 15 C -0.098 4.098 16 C -0.246 4.246 17 C 0.086 3.914 18 C -0.539 4.539 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.821 5.821 22 Si 1.105 2.895 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.252 1.252 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.413 0.587 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.499 -17.172 -6.032 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.319 6.319 4 C -0.004 4.004 5 C 0.090 3.910 6 C -0.212 4.212 7 C -0.207 4.207 8 N -0.374 5.374 9 C 0.310 3.690 10 O -0.436 6.436 11 C -0.110 4.110 12 C -0.188 4.188 13 C -0.098 4.098 14 C -0.270 4.270 15 C -0.116 4.116 16 C -0.266 4.266 17 C 0.084 3.916 18 C -0.567 4.567 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.445 5.445 22 Si 0.923 3.077 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.176 1.176 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.249 0.751 40 H 0.131 0.869 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.982 -15.984 -4.413 19.889 hybrid contribution 0.516 -0.132 -1.545 1.634 sum -10.466 -16.116 -5.958 20.119 Atomic orbital electron populations 1.21766 0.93155 1.03305 1.02547 1.22674 0.96123 0.82600 1.01130 1.87855 1.20218 1.28165 1.95619 1.22458 0.82315 0.93551 1.02074 1.20100 0.79832 0.95160 0.95889 1.22065 1.01432 1.00868 0.96800 1.22023 1.01391 1.00799 0.96441 1.45884 1.06514 1.08286 1.76725 1.20946 0.90971 0.82730 0.74360 1.90631 1.65530 1.38282 1.49165 1.20286 0.91051 0.95118 1.04515 1.19498 1.11125 0.95047 0.93111 1.20800 0.97769 0.94722 0.96555 1.20705 1.13711 0.95744 0.96878 1.20885 0.99052 0.98592 0.93101 1.21146 1.13070 0.95677 0.96681 1.17771 0.88989 0.91298 0.93556 1.20530 1.27944 1.15111 0.93120 0.91254 1.28171 0.94412 0.91050 1.07478 1.70552 1.11394 1.29989 1.32548 0.83163 0.75285 0.78689 0.70569 1.19448 1.20204 1.17583 0.92625 0.92396 0.89095 0.92106 0.92465 0.90799 0.91514 0.93914 0.90853 0.92840 0.91946 0.91009 0.93723 0.75081 0.86926 0.88768 0.86321 0.86461 0.87443 0.90001 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.40 -8.10 8.99 -148.98 -1.34 -9.44 16 4 C 0.07 1.37 4.92 71.98 0.35 1.73 16 5 C 0.18 4.64 0.89 3.60 0.00 4.64 16 6 C -0.15 -4.81 8.25 71.98 0.59 -4.21 16 7 C -0.15 -4.20 8.26 71.98 0.59 -3.60 16 8 N -0.72 -19.50 5.11 -422.93 -2.16 -21.66 16 9 C 0.52 19.55 6.88 87.66 0.60 20.15 16 10 O -0.56 -26.35 12.24 -3.04 -0.04 -26.39 16 11 C -0.07 -2.62 5.18 29.10 0.15 -2.47 16 12 C -0.19 -8.85 4.43 -19.40 -0.09 -8.93 16 13 C -0.08 -3.57 9.66 22.22 0.21 -3.35 16 14 C -0.25 -11.33 10.05 22.46 0.23 -11.10 16 15 C -0.10 -4.80 10.02 22.22 0.22 -4.57 16 16 C -0.25 -13.58 7.95 22.73 0.18 -13.40 16 17 C 0.09 4.72 5.30 -21.29 -0.11 4.61 16 18 C -0.54 -29.22 8.08 23.46 0.19 -29.03 16 19 H 0.07 3.68 6.73 -2.91 -0.02 3.66 16 20 C 0.00 0.26 4.94 85.25 0.42 0.68 16 21 N -0.82 -45.45 12.31 21.82 0.27 -45.18 16 22 Si 1.10 45.23 30.00 68.60 2.06 47.29 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.04 1.69 6.16 -2.39 -0.01 1.68 16 34 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.91 7.68 -2.39 -0.02 1.89 16 38 H 0.04 1.60 6.17 -2.38 -0.01 1.58 16 39 H 0.41 7.95 8.47 -92.71 -0.79 7.17 16 40 H 0.11 3.29 8.05 -2.39 -0.02 3.27 16 41 H 0.09 3.54 7.06 -2.39 -0.02 3.52 16 42 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 43 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 44 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.08 4.75 6.49 -2.91 -0.02 4.73 16 46 H 0.28 16.31 6.68 -92.71 -0.62 15.69 16 Total: -1.00 -69.65 370.37 3.90 -65.76 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.33 Total: 38.41 kcal Atomic # 6 Polarization: -53.56 SS G_CDS: 4.77 Total: -48.79 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -1.89 Total: -66.84 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.38 Total: -35.83 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.06 Total: 47.29 kcal Total: -69.65 3.90 -65.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818024412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.428 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds