Wall clock time and date at job start Tue Mar 31 2020 08:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.50705 * 109.47066 * 269.99622 * 4 3 2 6 6 H 1.08001 * 119.99987 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00127 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00059 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00144 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47035 * 89.99867 * 9 7 5 11 11 H 1.48496 * 109.47390 * 210.00116 * 9 7 5 12 12 H 1.48496 * 109.47004 * 330.00404 * 9 7 5 13 13 C 1.34779 * 120.00050 * 89.99866 * 3 2 1 14 14 O 1.21273 * 120.00093 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99767 * 359.97438 * 13 3 2 16 16 C 1.53000 * 109.46735 * 180.02562 * 15 13 3 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47482 * 180.02562 * 17 16 15 19 19 H 1.09002 * 109.46906 * 55.00224 * 18 17 16 20 20 O 1.42899 * 109.47478 * 295.00066 * 18 17 16 21 21 C 1.50699 * 109.47482 * 174.99860 * 18 17 16 22 22 C 1.38236 * 119.99844 * 84.72726 * 21 18 17 23 23 C 1.38240 * 119.99808 * 179.78702 * 22 21 18 24 24 C 1.38231 * 119.99865 * 0.44515 * 23 22 21 25 25 C 1.38233 * 120.00154 * 359.80650 * 24 23 22 26 26 C 1.38228 * 119.99936 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 28 28 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 29 29 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 31 31 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 32 32 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 33 33 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 34 34 H 0.97001 * 120.00292 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46797 * 60.00350 * 15 13 3 36 36 H 1.08992 * 109.47518 * 300.00347 * 15 13 3 37 37 H 1.09002 * 109.47398 * 300.00410 * 16 15 13 38 38 H 1.09001 * 109.47194 * 60.00591 * 16 15 13 39 39 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 40 40 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 41 41 H 0.96705 * 114.00115 * 300.00173 * 20 18 17 42 42 H 1.07998 * 120.00140 * 0.02562 * 22 21 18 43 43 H 1.08004 * 119.99537 * 180.27497 * 23 22 21 44 44 H 1.08007 * 119.99307 * 179.83263 * 24 23 22 45 45 H 1.07999 * 119.99764 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.99910 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 3.3493 3.1256 -3.6180 9 14 5.9133 2.0955 -3.4174 10 1 5.9762 0.8742 -4.2599 11 1 6.3925 3.2625 -4.2007 12 1 6.7736 1.9158 -2.2204 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3221 2.2440 3.6352 17 6 2.0672 1.5227 4.9603 18 6 2.3974 2.4604 6.1231 19 1 1.8311 3.3856 6.0159 20 8 3.7959 2.7543 6.1158 21 6 2.0309 1.7951 7.4247 22 6 2.9217 0.9318 8.0345 23 6 2.5872 0.3249 9.2307 24 6 1.3582 0.5743 9.8123 25 6 0.4653 1.4336 9.1998 26 6 0.8016 2.0439 8.0060 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 3.6751 3.5155 -4.4443 35 1 2.6211 0.4187 2.5303 36 1 0.9432 1.0126 2.5299 37 1 3.3701 2.5382 3.5779 38 1 1.6919 3.1314 3.5771 39 1 1.0193 1.2282 5.0178 40 1 2.6976 0.6355 5.0182 41 1 4.3619 1.9757 6.2075 42 1 3.8805 0.7344 7.5785 43 1 3.2850 -0.3462 9.7094 44 1 1.0959 0.0980 10.7455 45 1 -0.4950 1.6280 9.6540 46 1 0.1038 2.7150 7.5273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823198263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:31 Heat of formation + Delta-G solvation = -82.264537 kcal Electronic energy + Delta-G solvation = -24370.513137 eV Core-core repulsion = 20838.252300 eV Total energy + Delta-G solvation = -3532.260838 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -39.97389 -39.05208 -37.35884 -35.28705 -33.96530 -32.74106 -31.81999 -31.15192 -30.05968 -28.90519 -26.90554 -24.73783 -23.00940 -22.91280 -22.63104 -21.28181 -21.02831 -18.18818 -17.82559 -16.54786 -16.30891 -16.22964 -15.89148 -15.57156 -15.34048 -15.04879 -14.38212 -14.28978 -14.00812 -13.69980 -13.50446 -13.33033 -13.23279 -12.89923 -12.38154 -12.12788 -12.10675 -11.83135 -11.74615 -11.62004 -11.42758 -11.34009 -11.13584 -10.93209 -10.87603 -10.73697 -10.50609 -10.44765 -10.17840 -10.09366 -9.59624 -9.23666 -9.02879 -8.77700 -8.40640 -7.60134 -6.01220 -4.05729 1.01917 1.08491 3.31642 3.38338 3.42322 3.44340 3.53163 3.97484 4.27471 4.33954 4.47955 4.54334 4.66477 4.79080 4.86398 4.94068 5.07412 5.18106 5.21895 5.32933 5.34660 5.36963 5.44777 5.59989 5.64243 5.68577 5.71446 5.73219 5.81840 5.82899 5.91154 6.09416 6.14180 6.19503 6.25954 6.26819 6.37760 6.51342 6.56986 6.67303 7.12447 7.44687 7.49424 7.61224 7.95763 8.27753 8.50335 8.94537 9.18214 9.59389 11.06841 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.002535 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.620903 B =11042.707006 C =11652.851437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.600 5.600 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.503 3.497 14 O -0.542 6.542 15 C -0.140 4.140 16 C -0.100 4.100 17 C -0.144 4.144 18 C 0.146 3.854 19 H 0.109 0.891 20 O -0.550 6.550 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.372 0.628 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 -9.010 23.895 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.290 3.710 14 O -0.420 6.420 15 C -0.180 4.180 16 C -0.138 4.138 17 C -0.182 4.182 18 C 0.087 3.913 19 H 0.126 0.874 20 O -0.356 6.356 21 C -0.111 4.111 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.130 4.130 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.219 0.781 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.655 -7.679 23.619 25.712 hybrid contribution 1.021 -0.935 -0.348 1.428 sum -5.634 -8.614 23.271 25.446 Atomic orbital electron populations 1.22219 0.96940 1.01286 1.02274 1.21384 0.93398 0.84366 1.02533 1.48279 1.63879 1.13195 1.07880 1.19243 0.96163 0.93648 0.78324 1.21441 0.96978 1.31720 1.06148 0.92551 1.24942 0.97841 0.94968 0.96455 1.69934 1.35687 1.33544 1.14303 0.86502 0.84751 0.77636 0.78570 1.20688 1.21093 1.19899 1.20388 0.78405 0.86999 0.85248 1.90665 1.45770 1.18231 1.87316 1.21728 1.02705 0.99811 0.93748 1.21268 1.03788 0.97808 0.90891 1.22306 1.02457 0.98582 0.94813 1.20898 0.82813 0.98211 0.89425 0.87363 1.86674 1.15803 1.36966 1.96115 1.20695 0.94997 0.97745 0.97652 1.20902 0.99357 0.96925 0.95973 1.21130 0.96865 0.99827 0.95734 1.21169 0.94309 0.98727 1.00081 1.21158 0.99601 0.97198 0.95675 1.21027 0.96180 1.00026 0.95769 0.93075 0.92120 0.92284 0.90149 0.91765 0.95175 0.93974 0.92767 0.89815 0.89914 0.90428 0.91279 0.90955 0.91517 0.78058 0.86154 0.86027 0.86163 0.85999 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.84 2.46 -175.06 -0.43 -13.27 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -15.10 9.39 -34.44 -0.32 -15.43 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.50 10.55 7.67 -10.98 -0.08 10.46 16 14 O -0.54 -13.94 15.56 5.56 0.09 -13.85 16 15 C -0.14 -2.03 4.25 -27.88 -0.12 -2.15 16 16 C -0.10 -1.36 4.40 -26.73 -0.12 -1.48 16 17 C -0.14 -1.43 4.87 -26.74 -0.13 -1.56 16 18 C 0.15 1.46 3.21 -27.89 -0.09 1.37 16 19 H 0.11 1.12 8.05 -51.93 -0.42 0.70 16 20 O -0.55 -6.20 12.67 -35.23 -0.45 -6.64 16 21 C -0.11 -1.02 5.00 -104.62 -0.52 -1.55 16 22 C -0.11 -0.96 9.33 -39.58 -0.37 -1.33 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -0.94 10.05 -39.59 -0.40 -1.33 16 25 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 26 C -0.11 -0.97 9.68 -39.59 -0.38 -1.35 16 27 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 36 H 0.08 1.02 7.18 -51.93 -0.37 0.64 16 37 H 0.08 1.23 7.78 -51.93 -0.40 0.83 16 38 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.37 2.93 7.40 45.56 0.34 3.27 16 42 H 0.12 0.80 6.62 -52.49 -0.35 0.45 16 43 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 44 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -35.17 380.25 -9.32 -44.49 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.87 Total: 1.66 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -3.10 Total: -8.99 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.31 Total: -39.54 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.36 Total: -20.50 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.17 -9.32 -44.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823198263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.775 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds