Wall clock time and date at job start Tue Mar 31 2020 08:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46915 * 2 1 4 4 C 1.46494 * 119.99974 * 269.99444 * 3 2 1 5 5 C 1.50699 * 109.47378 * 269.99978 * 4 3 2 6 6 H 1.08002 * 119.99894 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99995 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00403 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99679 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47172 * 60.00385 * 9 7 5 11 11 H 1.48508 * 109.46641 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47218 * 300.00338 * 9 7 5 13 13 C 1.34779 * 120.00105 * 89.99663 * 3 2 1 14 14 O 1.21281 * 120.00109 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99840 * 0.02562 * 13 3 2 16 16 C 1.53000 * 109.46740 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.46876 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.47338 * 179.97438 * 17 16 15 19 19 H 1.08999 * 109.47269 * 305.00414 * 18 17 16 20 20 O 1.42903 * 109.46459 * 65.00307 * 18 17 16 21 21 C 1.50696 * 109.47222 * 184.99973 * 18 17 16 22 22 C 1.38234 * 120.00111 * 279.72695 * 21 18 17 23 23 C 1.38238 * 119.99829 * 179.78647 * 22 21 18 24 24 C 1.38239 * 119.99904 * 0.44948 * 23 22 21 25 25 C 1.38233 * 119.99728 * 359.80521 * 24 23 22 26 26 C 1.38229 * 120.00465 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47352 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47530 * 300.00665 * 1 2 3 29 29 H 1.09008 * 109.46848 * 60.00248 * 1 2 3 30 30 H 1.08996 * 109.47481 * 239.99818 * 2 1 3 31 31 H 1.09002 * 109.46817 * 119.99302 * 2 1 3 32 32 H 1.08996 * 109.47358 * 30.00455 * 4 3 2 33 33 H 1.09002 * 109.47120 * 150.00247 * 4 3 2 34 34 H 0.96999 * 120.00427 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.47506 * 59.99717 * 15 13 3 36 36 H 1.08999 * 109.46876 * 299.99632 * 15 13 3 37 37 H 1.09005 * 109.47575 * 60.00253 * 16 15 13 38 38 H 1.08999 * 109.47254 * 299.99546 * 16 15 13 39 39 H 1.09005 * 109.46934 * 60.00280 * 17 16 15 40 40 H 1.08999 * 109.47130 * 300.00016 * 17 16 15 41 41 H 0.96700 * 114.00311 * 60.00313 * 20 18 17 42 42 H 1.07998 * 120.00194 * 0.02562 * 22 21 18 43 43 H 1.08003 * 120.00038 * 180.27175 * 23 22 21 44 44 H 1.08001 * 119.99802 * 179.83174 * 24 23 22 45 45 H 1.08004 * 119.99346 * 180.02562 * 25 24 23 46 46 H 1.07997 * 120.00005 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7036 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 3.3493 3.1256 -3.6180 9 14 5.9133 2.0956 -3.4172 10 1 6.1404 0.6388 -3.5945 11 1 6.1608 2.7957 -4.7033 12 1 6.8411 2.6189 -2.3826 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3240 2.2433 3.6352 17 6 2.0689 1.5221 4.9602 18 6 2.4013 2.4591 6.1232 19 1 3.4232 2.8229 6.0161 20 8 1.4982 3.5666 6.1156 21 6 2.2682 1.7113 7.4247 22 6 1.0201 1.5203 7.9876 23 6 0.8976 0.8305 9.1792 24 6 2.0240 0.3397 9.8127 25 6 3.2725 0.5353 9.2525 26 6 3.3946 1.2211 8.0586 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6753 3.5161 -4.4439 35 1 2.6227 0.4188 2.5300 36 1 0.9443 1.0115 2.5302 37 1 1.6937 3.1308 3.5779 38 1 3.3720 2.5375 3.5771 39 1 2.6989 0.6344 5.0179 40 1 1.0209 1.2283 5.0181 41 1 0.5685 3.3166 6.2073 42 1 0.1404 1.9067 7.4944 43 1 -0.0779 0.6774 9.6168 44 1 1.9285 -0.1969 10.7451 45 1 4.1525 0.1515 9.7473 46 1 4.3701 1.3743 7.6211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823198264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:38 Heat of formation + Delta-G solvation = -82.457731 kcal Electronic energy + Delta-G solvation = -24365.407405 eV Core-core repulsion = 20833.138190 eV Total energy + Delta-G solvation = -3532.269215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.97142 -39.05071 -37.36280 -35.28589 -33.96003 -32.74142 -31.81931 -31.16369 -30.05899 -28.90184 -26.90403 -24.73769 -23.01684 -22.93467 -22.61747 -21.28605 -21.01366 -18.18692 -17.80704 -16.54688 -16.35356 -16.19523 -15.88909 -15.63517 -15.22306 -15.09871 -14.35929 -14.34221 -14.02790 -13.69612 -13.43056 -13.33566 -13.26605 -12.90327 -12.39558 -12.11882 -12.08390 -11.86936 -11.76893 -11.55421 -11.49070 -11.31742 -11.12680 -10.93074 -10.87827 -10.74303 -10.52608 -10.41513 -10.17969 -10.09466 -9.61389 -9.23668 -9.03696 -8.77731 -8.40346 -7.60154 -6.01132 -4.05776 1.01680 1.08493 3.33312 3.37790 3.40200 3.44198 3.53061 3.97483 4.28249 4.33977 4.47786 4.53351 4.66468 4.78771 4.86355 4.94762 5.06759 5.17525 5.22746 5.32812 5.34222 5.40712 5.41687 5.59500 5.64159 5.69014 5.70019 5.77542 5.79998 5.83409 5.90596 6.09479 6.13997 6.19464 6.26145 6.27235 6.38329 6.51328 6.56311 6.67285 7.12588 7.43670 7.49468 7.61149 7.95678 8.27794 8.50422 8.94240 9.18205 9.59249 11.06894 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002522 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.508893 B =11099.192955 C =11556.618272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.600 5.600 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.542 6.542 15 C -0.140 4.140 16 C -0.100 4.100 17 C -0.144 4.144 18 C 0.146 3.854 19 H 0.109 0.891 20 O -0.550 6.550 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.111 4.111 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.371 0.629 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 -9.058 23.896 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.420 6.420 15 C -0.180 4.180 16 C -0.138 4.138 17 C -0.182 4.182 18 C 0.086 3.914 19 H 0.126 0.874 20 O -0.355 6.355 21 C -0.111 4.111 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.129 4.129 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.219 0.781 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.708 -8.001 23.613 25.577 hybrid contribution 0.451 -0.735 -0.335 0.926 sum -5.257 -8.737 23.278 25.413 Atomic orbital electron populations 1.22220 0.96939 1.01276 1.02275 1.21385 0.93401 0.84365 1.02536 1.48277 1.63884 1.13186 1.07880 1.19236 0.96136 0.93646 0.78321 1.21403 0.96984 1.31832 1.06177 0.92612 1.24938 0.97818 0.94977 0.96425 1.69920 1.35705 1.33461 1.14365 0.86568 0.84885 0.78197 0.77816 1.20290 1.21184 1.20192 1.20390 0.78419 0.86990 0.85249 1.90668 1.45758 1.18238 1.87320 1.21727 1.02728 0.99790 0.93748 1.21269 1.03339 0.98255 0.90892 1.22310 1.02196 0.98833 0.94824 1.20910 0.95044 0.85986 0.89414 0.87362 1.86675 1.19734 1.33006 1.96120 1.20686 0.93794 0.99023 0.97607 1.20891 0.96842 0.99166 0.96238 1.21127 0.98701 0.98206 0.95570 1.21172 0.92782 1.00243 1.00044 1.21167 0.97619 0.98937 0.95913 1.21053 0.98284 0.98144 0.95424 0.92289 0.93081 0.92117 0.90147 0.91762 0.95176 0.93978 0.92700 0.89826 0.89902 0.90554 0.91153 0.90911 0.91565 0.78147 0.86200 0.86035 0.86157 0.85984 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.85 2.46 -175.06 -0.43 -13.28 16 4 C 0.25 6.55 5.16 -5.20 -0.03 6.52 16 5 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.50 10.55 7.67 -10.98 -0.08 10.46 16 14 O -0.54 -13.94 15.56 5.56 0.09 -13.86 16 15 C -0.14 -2.03 4.25 -27.88 -0.12 -2.15 16 16 C -0.10 -1.37 4.40 -26.73 -0.12 -1.48 16 17 C -0.14 -1.43 4.87 -26.73 -0.13 -1.56 16 18 C 0.15 1.46 3.21 -27.88 -0.09 1.37 16 19 H 0.11 1.14 8.00 -51.93 -0.42 0.73 16 20 O -0.55 -6.06 12.72 -35.23 -0.45 -6.51 16 21 C -0.11 -1.03 4.97 -104.63 -0.52 -1.55 16 22 C -0.11 -0.94 9.32 -39.58 -0.37 -1.30 16 23 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 24 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -0.94 10.05 -39.59 -0.40 -1.33 16 26 C -0.11 -0.98 9.67 -39.58 -0.38 -1.36 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 29 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 35 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 36 H 0.08 1.02 7.19 -51.93 -0.37 0.65 16 37 H 0.08 1.17 7.78 -51.93 -0.40 0.77 16 38 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.37 2.78 7.50 45.56 0.34 3.12 16 42 H 0.12 0.76 6.78 -52.49 -0.36 0.40 16 43 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 46 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -35.13 380.44 -9.31 -44.44 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.87 Total: 1.60 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -3.10 Total: -8.99 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.31 Total: -39.54 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.36 Total: -20.37 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.13 -9.31 -44.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823198264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.015 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds