Wall clock time and date at job start Tue Mar 31 2020 08:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46915 * 2 1 4 4 C 1.46494 * 119.99974 * 269.99444 * 3 2 1 5 5 C 1.50699 * 109.47378 * 269.99978 * 4 3 2 6 6 H 1.08002 * 119.99894 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99995 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00403 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99679 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47172 * 60.00385 * 9 7 5 11 11 H 1.48508 * 109.46641 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47218 * 300.00338 * 9 7 5 13 13 C 1.34779 * 120.00105 * 89.99663 * 3 2 1 14 14 O 1.21281 * 120.00109 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99840 * 0.02562 * 13 3 2 16 16 C 1.53000 * 109.46740 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.46876 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.47338 * 179.97438 * 17 16 15 19 19 H 1.08999 * 109.47269 * 305.00414 * 18 17 16 20 20 O 1.42903 * 109.46459 * 65.00307 * 18 17 16 21 21 C 1.50696 * 109.47222 * 184.99973 * 18 17 16 22 22 C 1.38234 * 120.00111 * 279.72695 * 21 18 17 23 23 C 1.38238 * 119.99829 * 179.78647 * 22 21 18 24 24 C 1.38239 * 119.99904 * 0.44948 * 23 22 21 25 25 C 1.38233 * 119.99728 * 359.80521 * 24 23 22 26 26 C 1.38229 * 120.00465 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47352 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47530 * 300.00665 * 1 2 3 29 29 H 1.09008 * 109.46848 * 60.00248 * 1 2 3 30 30 H 1.08996 * 109.47481 * 239.99818 * 2 1 3 31 31 H 1.09002 * 109.46817 * 119.99302 * 2 1 3 32 32 H 1.08996 * 109.47358 * 30.00455 * 4 3 2 33 33 H 1.09002 * 109.47120 * 150.00247 * 4 3 2 34 34 H 0.96999 * 120.00427 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.47506 * 59.99717 * 15 13 3 36 36 H 1.08999 * 109.46876 * 299.99632 * 15 13 3 37 37 H 1.09005 * 109.47575 * 60.00253 * 16 15 13 38 38 H 1.08999 * 109.47254 * 299.99546 * 16 15 13 39 39 H 1.09005 * 109.46934 * 60.00280 * 17 16 15 40 40 H 1.08999 * 109.47130 * 300.00016 * 17 16 15 41 41 H 0.96700 * 114.00311 * 60.00313 * 20 18 17 42 42 H 1.07998 * 120.00194 * 0.02562 * 22 21 18 43 43 H 1.08003 * 120.00038 * 180.27175 * 23 22 21 44 44 H 1.08001 * 119.99802 * 179.83174 * 24 23 22 45 45 H 1.08004 * 119.99346 * 180.02562 * 25 24 23 46 46 H 1.07997 * 120.00005 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7036 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 3.3493 3.1256 -3.6180 9 14 5.9133 2.0956 -3.4172 10 1 6.1404 0.6388 -3.5945 11 1 6.1608 2.7957 -4.7033 12 1 6.8411 2.6189 -2.3826 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3240 2.2433 3.6352 17 6 2.0689 1.5221 4.9602 18 6 2.4013 2.4591 6.1232 19 1 3.4232 2.8229 6.0161 20 8 1.4982 3.5666 6.1156 21 6 2.2682 1.7113 7.4247 22 6 1.0201 1.5203 7.9876 23 6 0.8976 0.8305 9.1792 24 6 2.0240 0.3397 9.8127 25 6 3.2725 0.5353 9.2525 26 6 3.3946 1.2211 8.0586 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.6753 3.5161 -4.4439 35 1 2.6227 0.4188 2.5300 36 1 0.9443 1.0115 2.5302 37 1 1.6937 3.1308 3.5779 38 1 3.3720 2.5375 3.5771 39 1 2.6989 0.6344 5.0179 40 1 1.0209 1.2283 5.0181 41 1 0.5685 3.3166 6.2073 42 1 0.1404 1.9067 7.4944 43 1 -0.0779 0.6774 9.6168 44 1 1.9285 -0.1969 10.7451 45 1 4.1525 0.1515 9.7473 46 1 4.3701 1.3743 7.6211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823198264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:38 Heat of formation + Delta-G solvation = -105.010612 kcal Electronic energy + Delta-G solvation = -24366.385371 eV Core-core repulsion = 20833.138190 eV Total energy + Delta-G solvation = -3533.247181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83178 -40.46813 -38.12921 -36.96484 -35.20067 -34.72825 -32.57049 -31.72425 -31.58929 -30.08776 -28.60527 -25.94461 -24.65634 -23.97981 -23.47129 -22.30196 -21.83811 -19.77582 -18.63990 -18.47842 -17.77500 -17.22837 -17.10287 -16.70571 -16.42926 -16.19772 -15.88389 -15.36074 -14.90118 -14.69070 -14.63860 -14.46973 -14.21741 -14.07628 -13.87414 -13.58395 -13.25138 -13.18072 -12.88761 -12.80554 -12.73050 -12.61562 -12.50326 -12.35964 -12.15201 -11.95640 -11.88952 -11.74241 -11.71027 -11.53724 -10.98630 -10.65373 -10.51205 -9.80626 -9.62326 -9.41570 -8.23010 -6.38371 0.42506 0.51520 1.34746 1.39677 1.46905 1.89544 2.31909 2.47644 2.86188 3.05869 3.52144 3.61186 3.79409 3.93223 4.00642 4.09604 4.15796 4.18602 4.30300 4.37567 4.39686 4.45946 4.59805 4.62722 4.69072 4.72435 4.78852 4.88418 4.95779 5.00308 5.03214 5.06525 5.09552 5.17031 5.22942 5.30323 5.41141 5.47012 5.57942 5.58135 5.64191 5.69371 5.88113 6.06505 6.12256 6.69626 6.81563 6.84782 7.28044 7.54093 8.83846 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002522 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.508893 B =11099.192955 C =11556.618272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.258 1.258 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.489 3.511 14 O -0.604 6.604 15 C -0.123 4.123 16 C -0.094 4.094 17 C -0.129 4.129 18 C 0.148 3.852 19 H 0.093 0.907 20 O -0.571 6.571 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.128 4.128 26 C -0.128 4.128 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.020 0.980 33 H -0.008 1.008 34 H 0.267 0.733 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.385 0.615 42 H 0.137 0.863 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 -11.934 25.842 29.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.139 3.861 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.279 3.721 14 O -0.486 6.486 15 C -0.163 4.163 16 C -0.133 4.133 17 C -0.166 4.166 18 C 0.089 3.911 19 H 0.111 0.889 20 O -0.379 6.379 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.146 4.146 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.038 0.962 33 H 0.010 0.990 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.235 0.765 42 H 0.154 0.846 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.156 0.844 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.077 -10.937 25.577 28.473 hybrid contribution 0.504 0.183 -0.906 1.053 sum -5.574 -10.754 24.671 27.484 Atomic orbital electron populations 1.22155 0.94595 1.03492 1.01642 1.21748 0.95311 0.81281 1.03910 1.48345 1.63950 1.15176 1.06296 1.18666 0.95252 0.91384 0.80768 1.21686 0.97907 1.32039 1.06516 0.92894 1.25904 1.02561 0.94478 0.96444 1.70048 1.37883 1.34187 1.14808 0.85456 0.78831 0.79108 0.77340 1.18271 1.20280 1.20369 1.21631 0.76847 0.86566 0.87017 1.90635 1.48419 1.21191 1.88318 1.21738 1.05367 0.99744 0.89407 1.21184 1.01205 0.97911 0.92959 1.22181 1.03802 0.98503 0.92143 1.20807 0.94255 0.85801 0.90258 0.88880 1.86640 1.21014 1.34004 1.96233 1.20616 0.94556 0.99714 0.97424 1.21151 0.97003 0.99148 0.96648 1.21449 0.99786 0.97702 0.95347 1.21513 0.92593 0.99935 1.00730 1.21430 0.98657 0.98766 0.95691 1.21247 0.98522 0.98697 0.96109 0.88545 0.91876 0.94648 0.91329 0.87809 0.96217 0.98967 0.92401 0.87016 0.86424 0.92845 0.93789 0.89617 0.89361 0.76509 0.84555 0.84006 0.84137 0.84409 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 10.24 71.98 0.74 -3.18 16 2 C 0.10 3.02 5.93 86.38 0.51 3.53 16 3 N -0.61 -26.28 2.46 -826.17 -2.03 -28.31 16 4 C 0.26 14.59 5.16 85.63 0.44 15.04 16 5 C -0.54 -32.21 9.39 25.60 0.24 -31.97 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.00 0.29 5.46 84.66 0.46 0.75 16 8 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 9 Si 0.97 45.83 29.54 68.60 2.03 47.86 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.49 20.81 7.67 87.66 0.67 21.48 16 14 O -0.60 -32.75 15.56 -3.03 -0.05 -32.79 16 15 C -0.12 -3.30 4.25 29.85 0.13 -3.17 16 16 C -0.09 -2.54 4.40 30.59 0.13 -2.40 16 17 C -0.13 -2.28 4.87 30.60 0.15 -2.13 16 18 C 0.15 2.86 3.21 29.85 0.10 2.95 16 19 H 0.09 2.02 8.00 -2.39 -0.02 2.00 16 20 O -0.57 -12.33 12.72 -148.98 -1.90 -14.23 16 21 C -0.12 -2.10 4.97 -19.87 -0.10 -2.20 16 22 C -0.12 -1.74 9.32 22.27 0.21 -1.53 16 23 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 24 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 25 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 26 C -0.13 -2.11 9.67 22.27 0.22 -1.90 16 27 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 29 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.10 2.34 6.44 -2.39 -0.02 2.32 16 32 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 33 H -0.01 -0.51 7.42 -2.39 -0.02 -0.52 16 34 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.11 2.44 7.40 -2.39 -0.02 2.42 16 36 H 0.12 2.40 7.19 -2.39 -0.02 2.38 16 37 H 0.05 1.67 7.78 -2.38 -0.02 1.65 16 38 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 39 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.39 5.29 7.50 -74.06 -0.56 4.74 16 42 H 0.14 1.36 6.78 -2.91 -0.02 1.34 16 43 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 46 H 0.13 1.88 8.04 -2.91 -0.02 1.85 16 Total: -1.00 -81.53 380.44 3.31 -78.22 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.40 Total: 15.72 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 4.57 Total: -9.05 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -1.74 Total: -85.72 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -1.94 Total: -47.02 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -81.53 3.31 -78.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823198264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.792 kcal (2) G-P(sol) polarization free energy of solvation -81.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds