Wall clock time and date at job start Tue Mar 31 2020 09:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47242 * 2 1 4 4 C 1.35893 * 117.00265 * 180.02562 * 3 2 1 5 5 C 1.38799 * 120.02648 * 359.97438 * 4 3 2 6 6 C 1.38154 * 120.05312 * 180.30456 * 5 4 3 7 7 C 1.38194 * 120.11021 * 359.44212 * 6 5 4 8 8 C 1.50697 * 119.97427 * 180.25817 * 7 6 5 9 9 N 1.46900 * 109.47289 * 260.30012 * 8 7 6 10 10 C 1.46844 * 111.00167 * 66.04350 * 9 8 7 11 11 C 1.53039 * 109.52362 * 185.84187 * 10 9 8 12 12 C 1.53113 * 109.27729 * 300.81957 * 11 10 9 13 13 C 1.53121 * 109.16253 * 57.65444 * 12 11 10 14 14 H 1.08996 * 109.50209 * 62.28518 * 13 12 11 15 15 C 1.50705 * 109.50506 * 182.40249 * 13 12 11 16 16 H 1.08000 * 119.99688 * 120.00130 * 15 13 12 17 17 C 1.37870 * 120.00124 * 300.00095 * 15 13 12 18 18 N 1.31515 * 119.99955 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00216 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46841 * 90.00134 * 19 17 15 21 21 H 1.48500 * 109.47377 * 210.00268 * 19 17 15 22 22 H 1.48500 * 109.46956 * 330.00167 * 19 17 15 23 23 C 1.46846 * 110.99919 * 190.25593 * 9 8 7 24 24 C 1.38758 * 120.05595 * 0.55565 * 7 6 5 25 25 O 1.35891 * 120.03021 * 179.74752 * 24 7 6 26 26 C 1.38616 * 120.03047 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.47440 * 59.99612 * 1 2 3 28 28 H 1.08994 * 109.47007 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46508 * 300.00135 * 1 2 3 30 30 H 1.09005 * 109.46628 * 240.00591 * 2 1 3 31 31 H 1.08998 * 109.47440 * 120.00388 * 2 1 3 32 32 H 1.08002 * 119.96918 * 0.02562 * 5 4 3 33 33 H 1.08001 * 119.94286 * 179.72424 * 6 5 4 34 34 H 1.08997 * 109.47124 * 20.30183 * 8 7 6 35 35 H 1.09003 * 109.47417 * 140.29733 * 8 7 6 36 36 H 1.09007 * 109.46031 * 305.86069 * 10 9 8 37 37 H 1.09004 * 109.46248 * 65.82506 * 10 9 8 38 38 H 1.08996 * 109.50028 * 60.76097 * 11 10 9 39 39 H 1.09002 * 109.49914 * 180.87948 * 11 10 9 40 40 H 1.08995 * 109.52358 * 177.56073 * 12 11 10 41 41 H 1.09007 * 109.52594 * 297.68556 * 12 11 10 42 42 H 0.97001 * 120.00199 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.46518 * 294.17051 * 23 9 8 44 44 H 1.09003 * 109.46376 * 54.14249 * 23 9 8 45 45 H 0.96706 * 113.99726 * 269.98310 * 25 24 7 46 46 H 1.08003 * 120.05211 * 359.95045 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1997 0.4250 -0.0005 6 6 5.5694 0.6054 0.0053 7 6 6.1006 1.8812 -0.0006 8 6 7.5951 2.0744 -0.0001 9 7 8.0496 2.3754 1.3641 10 6 7.8459 1.2242 2.2527 11 6 8.1928 1.6197 3.6898 12 6 9.6513 2.0819 3.7488 13 6 9.8481 3.2501 2.7786 14 1 9.2218 4.0876 3.0858 15 6 11.2946 3.6728 2.7868 16 1 11.8739 3.6332 1.8761 17 6 11.8783 4.1102 3.9567 18 7 11.1730 4.1580 5.0657 19 14 13.6715 4.6336 3.9670 20 1 13.7651 6.0854 3.6692 21 1 14.2583 4.3637 5.3042 22 1 14.4166 3.8677 2.9358 23 6 9.4531 2.8073 1.3679 24 6 5.2591 2.9844 -0.0006 25 8 5.7821 4.2387 -0.0012 26 6 3.8841 2.8060 0.0000 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.7868 -0.5730 -0.0005 33 1 6.2260 -0.2520 0.0098 34 1 8.0794 1.1633 -0.3516 35 1 7.8548 2.9018 -0.6604 36 1 6.8037 0.9081 2.2044 37 1 8.4892 0.4030 1.9366 38 1 7.5405 2.4316 4.0113 39 1 8.0564 0.7606 4.3466 40 1 9.8902 2.4055 4.7618 41 1 10.3064 1.2578 3.4657 42 1 11.5838 4.4654 5.8889 43 1 10.0890 1.9788 1.0560 44 1 9.5784 3.6411 0.6771 45 1 5.9335 4.6020 0.8821 46 1 3.2274 3.6634 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:18 Heat of formation + Delta-G solvation = -65.186457 kcal Electronic energy + Delta-G solvation = -25257.065439 eV Core-core repulsion = 21725.545162 eV Total energy + Delta-G solvation = -3531.520276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.44782 -38.87912 -37.77844 -35.99133 -33.91376 -32.38753 -31.71583 -30.21957 -29.85106 -29.29264 -25.47365 -24.91817 -24.08648 -22.43585 -21.95275 -21.54227 -20.54503 -18.85271 -18.55316 -16.92377 -16.40435 -16.37390 -16.30404 -15.51683 -15.10432 -14.68022 -14.45928 -14.31946 -13.81318 -13.51822 -13.41597 -13.40687 -13.08110 -12.89703 -12.51674 -12.29177 -12.26423 -11.85967 -11.78085 -11.59213 -11.32932 -11.04980 -10.94139 -10.82635 -10.63616 -10.62242 -10.39958 -10.08584 -9.82113 -9.45887 -9.04715 -8.76825 -8.68816 -8.29264 -8.11572 -7.64220 -5.96346 -4.02384 1.23870 1.36426 2.95670 3.31738 3.38450 3.41376 3.58201 4.41508 4.46443 4.59614 4.60673 4.69703 4.83540 4.87864 5.00337 5.02564 5.15921 5.33747 5.36787 5.45264 5.50069 5.66989 5.70147 5.73433 5.86386 5.94300 5.98439 6.11475 6.17497 6.26978 6.34189 6.41366 6.53003 6.56761 6.63714 6.73958 6.76849 6.98693 7.22911 7.27206 7.41442 7.68585 7.76633 7.83438 7.85895 8.09546 8.18911 8.49700 9.01733 9.61943 11.09539 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.031156 B = 0.002852 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.489493 B = 9815.990777 C =10063.202870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.139 3.861 5 C -0.221 4.221 6 C -0.061 4.061 7 C -0.129 4.129 8 C 0.099 3.901 9 N -0.532 5.532 10 C 0.062 3.938 11 C -0.116 4.116 12 C -0.111 4.111 13 C 0.056 3.944 14 H 0.034 0.966 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.068 3.932 24 C 0.173 3.827 25 O -0.492 6.492 26 C -0.184 4.184 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.259 0.741 43 H 0.018 0.982 44 H 0.060 0.940 45 H 0.402 0.598 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.826 -8.904 -9.021 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.094 3.906 5 C -0.239 4.239 6 C -0.080 4.080 7 C -0.130 4.130 8 C -0.029 4.029 9 N -0.257 5.257 10 C -0.066 4.066 11 C -0.154 4.154 12 C -0.149 4.149 13 C 0.038 3.962 14 H 0.052 0.948 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.059 4.059 24 C 0.127 3.873 25 O -0.304 6.304 26 C -0.204 4.204 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.260 0.740 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.251 -8.381 -9.252 22.112 hybrid contribution 1.586 -0.649 0.287 1.738 sum -16.665 -9.030 -8.965 20.967 Atomic orbital electron populations 1.21776 0.92824 1.02785 1.03534 1.22766 0.95760 0.82081 1.01441 1.86048 1.19148 1.29195 1.88781 1.18659 0.82084 0.93569 0.96320 1.21135 0.94156 0.97829 1.10809 1.20739 0.94149 0.96427 0.96667 1.20120 0.96373 0.92374 1.04166 1.20867 0.89645 1.00275 0.92121 1.62011 1.22655 1.34676 1.06361 1.22059 0.99060 0.91120 0.94404 1.21663 1.00336 0.99673 0.93727 1.21657 0.91065 0.97733 1.04444 1.18650 0.95588 0.94010 0.87984 0.94813 1.21153 0.95985 1.43178 0.94951 0.92858 1.24929 0.97687 0.95564 0.95669 1.69889 1.35966 1.47258 0.99649 0.86636 0.85425 0.78952 0.77205 1.20697 1.21315 1.20046 1.22326 0.84230 0.97804 1.01523 1.17842 0.89051 0.84696 0.95729 1.84663 1.84146 1.27129 1.34450 1.20586 0.94705 0.95470 1.09600 0.91556 0.90424 0.91486 0.92085 0.91976 0.85648 0.85735 0.94911 0.89755 0.92317 0.96099 0.92245 0.93711 0.89149 0.95238 0.93087 0.96358 0.92117 0.73955 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.53 16 2 C 0.05 0.44 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.67 10.13 -19.40 -0.20 -3.87 16 4 C 0.14 1.75 6.68 -39.23 -0.26 1.49 16 5 C -0.22 -2.54 9.04 -39.40 -0.36 -2.90 16 6 C -0.06 -0.76 8.53 -39.63 -0.34 -1.10 16 7 C -0.13 -1.84 4.61 -104.45 -0.48 -2.32 16 8 C 0.10 1.53 4.75 -4.98 -0.02 1.51 16 9 N -0.53 -9.56 4.65 -236.11 -1.10 -10.66 16 10 C 0.06 1.08 5.25 -3.83 -0.02 1.06 16 11 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 12 C -0.11 -2.61 5.02 -26.61 -0.13 -2.74 16 13 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 14 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.24 11.35 55.43 0.63 -24.61 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 C 0.07 1.42 4.68 -3.83 -0.02 1.40 16 24 C 0.17 2.46 6.67 -39.24 -0.26 2.20 16 25 O -0.49 -6.98 12.73 -19.40 -0.25 -7.23 16 26 C -0.18 -2.46 9.93 -39.29 -0.39 -2.85 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 33 H 0.12 1.38 8.04 -52.49 -0.42 0.95 16 34 H 0.03 0.49 7.98 -51.93 -0.41 0.07 16 35 H 0.08 1.34 7.69 -51.93 -0.40 0.94 16 36 H 0.06 0.94 6.30 -51.93 -0.33 0.61 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 41 H 0.03 0.70 8.14 -51.92 -0.42 0.27 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 1.26 8.01 -51.93 -0.42 0.85 16 45 H 0.40 4.79 9.06 45.56 0.41 5.20 16 46 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -29.59 365.10 -9.67 -39.26 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.78 Total: 3.45 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.46 Total: -18.05 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.47 Total: -35.27 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.44 Total: -11.10 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.59 -9.67 -39.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.928 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds