Wall clock time and date at job start Tue Mar 31 2020 09:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46985 * 2 1 4 4 C 1.35994 * 117.00119 * 180.02562 * 3 2 1 5 5 C 1.38569 * 120.07393 * 359.97438 * 4 3 2 6 6 C 1.38244 * 120.00156 * 180.02562 * 5 4 3 7 7 C 1.38244 * 120.14594 * 0.24962 * 6 5 4 8 8 C 1.38245 * 120.14662 * 359.49725 * 7 6 5 9 9 C 1.50704 * 120.00123 * 180.25453 * 8 7 6 10 10 N 1.46904 * 109.46930 * 96.73530 * 9 8 7 11 11 C 1.46849 * 111.00145 * 69.42418 * 10 9 8 12 12 C 1.53028 * 109.52145 * 174.15810 * 11 10 9 13 13 C 1.53120 * 109.28094 * 59.18055 * 12 11 10 14 14 C 1.53119 * 109.15683 * 302.34298 * 13 12 11 15 15 H 1.09003 * 109.50500 * 297.70991 * 14 13 12 16 16 C 1.50706 * 109.50295 * 177.63910 * 14 13 12 17 17 H 1.07999 * 119.99130 * 239.99940 * 16 14 13 18 18 C 1.37871 * 120.00061 * 59.99626 * 16 14 13 19 19 N 1.31509 * 120.00263 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99698 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47571 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47195 * 120.00066 * 20 18 16 23 23 H 1.48500 * 109.47339 * 240.00117 * 20 18 16 24 24 C 1.46848 * 110.99993 * 305.20948 * 10 9 8 25 25 C 1.38568 * 120.00025 * 0.50455 * 8 7 6 26 26 O 1.35995 * 120.07470 * 179.76940 * 25 8 7 27 27 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46980 * 299.99804 * 1 2 3 29 29 H 1.08999 * 109.47030 * 59.99938 * 1 2 3 30 30 H 1.09001 * 109.47415 * 239.99859 * 2 1 3 31 31 H 1.08999 * 109.47030 * 120.00062 * 2 1 3 32 32 H 1.08009 * 119.99599 * 0.02562 * 5 4 3 33 33 H 1.07997 * 119.92442 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.92913 * 179.74620 * 7 6 5 35 35 H 1.09002 * 109.46803 * 216.73556 * 9 8 7 36 36 H 1.09003 * 109.46913 * 336.73451 * 9 8 7 37 37 H 1.08999 * 109.45742 * 294.17753 * 11 10 9 38 38 H 1.09004 * 109.46090 * 54.13660 * 11 10 9 39 39 H 1.09009 * 109.50020 * 179.11460 * 12 11 10 40 40 H 1.08996 * 109.50647 * 299.23118 * 12 11 10 41 41 H 1.08996 * 109.52220 * 62.24572 * 13 12 11 42 42 H 1.09001 * 109.52477 * 182.37522 * 13 12 11 43 43 H 0.96999 * 120.00243 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.46205 * 305.85883 * 24 10 9 45 45 H 1.08993 * 109.46122 * 65.82972 * 24 10 9 46 46 H 0.96695 * 113.99544 * 264.94545 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2001 0.4277 -0.0005 6 6 5.5704 0.6107 -0.0005 7 6 6.1004 1.8875 0.0046 8 6 5.2624 2.9870 -0.0006 9 6 5.8437 4.3774 -0.0008 10 7 5.8882 4.8894 -1.3770 11 6 4.5356 5.1526 -1.8846 12 6 4.6260 5.8185 -3.2594 13 6 5.3810 4.8953 -4.2197 14 6 6.7684 4.5980 -3.6443 15 1 7.3347 5.5257 -3.5618 16 6 7.4968 3.6434 -4.5549 17 1 7.8219 2.6833 -4.1820 18 6 7.7481 3.9956 -5.8640 19 7 7.3518 5.1644 -6.3181 20 14 8.6504 2.8120 -6.9929 21 1 8.9847 1.5729 -6.2458 22 1 7.7832 2.4731 -8.1498 23 1 9.9001 3.4487 -7.4808 24 6 6.6161 3.9674 -2.2582 25 6 3.8880 2.8107 -0.0006 26 8 3.0623 3.8913 -0.0010 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7885 -0.5709 -0.0005 33 1 6.2282 -0.2458 -0.0001 34 1 7.1714 2.0263 0.0088 35 1 5.2216 5.0314 0.6103 36 1 6.8533 4.3492 0.4092 37 1 3.9910 4.2124 -1.9714 38 1 4.0110 5.8136 -1.1945 39 1 3.6217 5.9995 -3.6428 40 1 5.1584 6.7655 -3.1709 41 1 4.8286 3.9633 -4.3387 42 1 5.4845 5.3837 -5.1887 43 1 7.5290 5.4124 -7.2390 44 1 7.6024 3.7676 -1.8397 45 1 6.0617 3.0329 -2.3434 46 1 2.7617 4.1569 0.8788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826862178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:23 Heat of formation + Delta-G solvation = -60.843080 kcal Electronic energy + Delta-G solvation = -26214.786396 eV Core-core repulsion = 22683.454462 eV Total energy + Delta-G solvation = -3531.331934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60675 -38.74778 -37.26546 -36.42674 -33.86299 -32.20197 -31.80680 -29.81651 -29.73331 -28.94008 -25.96110 -24.83484 -23.84922 -22.56105 -21.94819 -21.17580 -20.55790 -18.80703 -17.92466 -17.60460 -16.37087 -16.29302 -16.23656 -15.52768 -14.84133 -14.75040 -14.33194 -14.06079 -13.80396 -13.65367 -13.33325 -13.12148 -12.86664 -12.56351 -12.41067 -12.27826 -12.03621 -11.81632 -11.76793 -11.53027 -11.30486 -11.00475 -10.90989 -10.83738 -10.58772 -10.52096 -10.35477 -9.92492 -9.69190 -9.37079 -8.97321 -8.63022 -8.54376 -8.22597 -8.06103 -7.55674 -5.90079 -3.95802 1.25987 1.43199 3.05462 3.33705 3.41455 3.45133 3.67434 4.25564 4.47585 4.66121 4.68407 4.75403 4.93706 4.98289 5.01730 5.14625 5.31515 5.37613 5.39893 5.46154 5.53937 5.74486 5.80038 5.81609 5.97153 6.08917 6.12538 6.23018 6.29403 6.41577 6.52736 6.57424 6.61671 6.70075 6.74012 6.90671 6.94032 7.09723 7.23326 7.35101 7.52310 7.80195 7.82151 7.83784 7.94561 8.18520 8.27393 8.57614 9.08491 9.67897 11.15893 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.004201 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.443379 B = 6663.977588 C = 7077.472721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.099 3.901 5 C -0.202 4.202 6 C -0.089 4.089 7 C -0.126 4.126 8 C -0.096 4.096 9 C 0.098 3.902 10 N -0.525 5.525 11 C 0.069 3.931 12 C -0.119 4.119 13 C -0.109 4.109 14 C 0.055 3.945 15 H 0.032 0.968 16 C -0.511 4.511 17 H 0.053 0.947 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.067 3.933 25 C 0.083 3.917 26 O -0.475 6.475 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.089 0.911 43 H 0.258 0.742 44 H 0.055 0.945 45 H 0.023 0.977 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 -8.132 16.398 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.223 6.223 4 C 0.053 3.947 5 C -0.221 4.221 6 C -0.107 4.107 7 C -0.145 4.145 8 C -0.099 4.099 9 C -0.031 4.031 10 N -0.246 5.246 11 C -0.059 4.059 12 C -0.157 4.157 13 C -0.147 4.147 14 C 0.036 3.964 15 H 0.051 0.949 16 C -0.550 4.550 17 H 0.071 0.929 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.060 4.060 25 C 0.037 3.963 26 O -0.283 6.283 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.041 0.959 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.909 -7.422 15.607 19.921 hybrid contribution -0.015 -1.833 -0.284 1.855 sum -9.924 -9.255 15.324 20.468 Atomic orbital electron populations 1.21758 0.92782 1.02675 1.03578 1.22765 0.95855 0.82368 1.01213 1.86124 1.18607 1.28768 1.88768 1.19415 0.82643 0.93810 0.98834 1.21084 0.94329 0.97506 1.09198 1.20927 0.94176 0.97412 0.98165 1.20948 0.99961 0.91514 1.02114 1.20934 0.91821 0.98777 0.98324 1.21207 1.00193 0.88578 0.93102 1.62458 1.16868 1.44759 1.00563 1.22047 0.88458 0.99171 0.96214 1.21708 0.99095 0.99964 0.94960 1.21623 0.96323 0.96707 1.00049 1.18664 0.93148 0.96242 0.88371 0.94943 1.21191 1.35952 1.02213 0.95616 0.92914 1.24925 0.95791 0.95115 0.98023 1.69908 1.46745 1.20312 1.15764 0.86606 0.79571 0.81330 0.80884 1.19911 1.21162 1.21061 1.22309 0.95677 0.93006 0.94999 1.17480 0.88499 0.83770 1.06544 1.85096 1.65431 1.45105 1.32687 0.90503 0.91635 0.91379 0.92091 0.92319 0.85586 0.85693 0.85389 0.90553 0.90230 0.94494 0.92269 0.93765 0.92421 0.95440 0.89307 0.93206 0.92674 0.95853 0.77029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.31 -4.19 9.92 -34.22 -0.34 -4.53 16 4 C 0.10 1.43 6.70 -39.12 -0.26 1.17 16 5 C -0.20 -2.62 9.04 -39.46 -0.36 -2.97 16 6 C -0.09 -1.15 10.04 -39.58 -0.40 -1.55 16 7 C -0.13 -1.81 8.55 -39.58 -0.34 -2.15 16 8 C -0.10 -1.46 3.93 -104.50 -0.41 -1.87 16 9 C 0.10 1.50 5.42 -4.97 -0.03 1.48 16 10 N -0.52 -10.16 4.86 -236.11 -1.15 -11.30 16 11 C 0.07 1.34 3.94 -3.84 -0.02 1.32 16 12 C -0.12 -2.56 6.09 -26.65 -0.16 -2.72 16 13 C -0.11 -2.75 5.02 -26.61 -0.13 -2.89 16 14 C 0.05 1.42 2.26 -91.69 -0.21 1.21 16 15 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.51 -14.44 8.57 -34.44 -0.29 -14.73 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -26.02 11.35 55.43 0.63 -25.39 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.07 1.48 3.81 -3.83 -0.01 1.47 16 25 C 0.08 1.26 5.58 -39.12 -0.22 1.04 16 26 O -0.47 -6.72 9.72 -34.23 -0.33 -7.05 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 32 H 0.13 1.31 6.30 -52.48 -0.33 0.98 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.08 1.05 7.59 -51.93 -0.39 0.66 16 36 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 37 H 0.04 0.78 5.78 -51.93 -0.30 0.48 16 38 H 0.06 1.05 7.57 -51.93 -0.39 0.65 16 39 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.05 1.19 8.12 -51.93 -0.42 0.77 16 45 H 0.02 0.54 6.73 -51.93 -0.35 0.19 16 46 H 0.38 3.55 9.06 45.56 0.41 3.97 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -31.97 356.54 -9.84 -41.81 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.66 Total: 3.94 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.35 Total: -19.56 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.52 Total: -36.69 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.67 Total: -11.58 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.97 -9.84 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.033 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds