Wall clock time and date at job start Tue Mar 31 2020 09:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46985 * 2 1 4 4 C 1.35994 * 117.00119 * 180.02562 * 3 2 1 5 5 C 1.38569 * 120.07393 * 359.97438 * 4 3 2 6 6 C 1.38244 * 120.00156 * 180.02562 * 5 4 3 7 7 C 1.38244 * 120.14594 * 0.24962 * 6 5 4 8 8 C 1.38245 * 120.14662 * 359.49725 * 7 6 5 9 9 C 1.50704 * 120.00123 * 180.25453 * 8 7 6 10 10 N 1.46904 * 109.46930 * 96.73530 * 9 8 7 11 11 C 1.46849 * 111.00145 * 69.42418 * 10 9 8 12 12 C 1.53028 * 109.52145 * 174.15810 * 11 10 9 13 13 C 1.53120 * 109.28094 * 59.18055 * 12 11 10 14 14 C 1.53119 * 109.15683 * 302.34298 * 13 12 11 15 15 H 1.09003 * 109.50500 * 297.70991 * 14 13 12 16 16 C 1.50706 * 109.50295 * 177.63910 * 14 13 12 17 17 H 1.07999 * 119.99130 * 239.99940 * 16 14 13 18 18 C 1.37871 * 120.00061 * 59.99626 * 16 14 13 19 19 N 1.31509 * 120.00263 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99698 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47571 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47195 * 120.00066 * 20 18 16 23 23 H 1.48500 * 109.47339 * 240.00117 * 20 18 16 24 24 C 1.46848 * 110.99993 * 305.20948 * 10 9 8 25 25 C 1.38568 * 120.00025 * 0.50455 * 8 7 6 26 26 O 1.35995 * 120.07470 * 179.76940 * 25 8 7 27 27 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46980 * 299.99804 * 1 2 3 29 29 H 1.08999 * 109.47030 * 59.99938 * 1 2 3 30 30 H 1.09001 * 109.47415 * 239.99859 * 2 1 3 31 31 H 1.08999 * 109.47030 * 120.00062 * 2 1 3 32 32 H 1.08009 * 119.99599 * 0.02562 * 5 4 3 33 33 H 1.07997 * 119.92442 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.92913 * 179.74620 * 7 6 5 35 35 H 1.09002 * 109.46803 * 216.73556 * 9 8 7 36 36 H 1.09003 * 109.46913 * 336.73451 * 9 8 7 37 37 H 1.08999 * 109.45742 * 294.17753 * 11 10 9 38 38 H 1.09004 * 109.46090 * 54.13660 * 11 10 9 39 39 H 1.09009 * 109.50020 * 179.11460 * 12 11 10 40 40 H 1.08996 * 109.50647 * 299.23118 * 12 11 10 41 41 H 1.08996 * 109.52220 * 62.24572 * 13 12 11 42 42 H 1.09001 * 109.52477 * 182.37522 * 13 12 11 43 43 H 0.96999 * 120.00243 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.46205 * 305.85883 * 24 10 9 45 45 H 1.08993 * 109.46122 * 65.82972 * 24 10 9 46 46 H 0.96695 * 113.99544 * 264.94545 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2001 0.4277 -0.0005 6 6 5.5704 0.6107 -0.0005 7 6 6.1004 1.8875 0.0046 8 6 5.2624 2.9870 -0.0006 9 6 5.8437 4.3774 -0.0008 10 7 5.8882 4.8894 -1.3770 11 6 4.5356 5.1526 -1.8846 12 6 4.6260 5.8185 -3.2594 13 6 5.3810 4.8953 -4.2197 14 6 6.7684 4.5980 -3.6443 15 1 7.3347 5.5257 -3.5618 16 6 7.4968 3.6434 -4.5549 17 1 7.8219 2.6833 -4.1820 18 6 7.7481 3.9956 -5.8640 19 7 7.3518 5.1644 -6.3181 20 14 8.6504 2.8120 -6.9929 21 1 8.9847 1.5729 -6.2458 22 1 7.7832 2.4731 -8.1498 23 1 9.9001 3.4487 -7.4808 24 6 6.6161 3.9674 -2.2582 25 6 3.8880 2.8107 -0.0006 26 8 3.0623 3.8913 -0.0010 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7885 -0.5709 -0.0005 33 1 6.2282 -0.2458 -0.0001 34 1 7.1714 2.0263 0.0088 35 1 5.2216 5.0314 0.6103 36 1 6.8533 4.3492 0.4092 37 1 3.9910 4.2124 -1.9714 38 1 4.0110 5.8136 -1.1945 39 1 3.6217 5.9995 -3.6428 40 1 5.1584 6.7655 -3.1709 41 1 4.8286 3.9633 -4.3387 42 1 5.4845 5.3837 -5.1887 43 1 7.5290 5.4124 -7.2390 44 1 7.6024 3.7676 -1.8397 45 1 6.0617 3.0329 -2.3434 46 1 2.7617 4.1569 0.8788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826862178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:22 Heat of formation + Delta-G solvation = -81.516393 kcal Electronic energy + Delta-G solvation = -26215.682858 eV Core-core repulsion = 22683.454462 eV Total energy + Delta-G solvation = -3532.228396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67113 -40.02072 -38.60488 -37.46657 -35.65078 -33.86239 -32.68014 -31.65159 -31.12189 -29.94338 -27.31808 -26.87271 -24.78830 -23.82083 -23.27955 -22.87298 -21.76432 -20.37221 -19.23061 -18.64736 -18.35141 -17.32845 -17.20118 -16.81697 -16.45135 -16.12675 -15.73919 -15.55672 -15.02951 -14.94283 -14.78339 -14.30807 -14.17341 -14.00345 -13.91155 -13.44100 -13.34920 -13.08457 -12.89838 -12.86300 -12.74479 -12.65525 -12.49971 -12.26750 -12.03233 -11.74011 -11.70070 -11.63568 -11.50006 -11.30803 -10.86178 -10.64558 -10.37116 -9.69949 -9.12135 -9.07992 -8.06901 -6.21082 0.21954 0.38535 1.39720 1.40771 1.52534 2.18356 2.43041 2.63978 3.19744 3.24027 3.29387 3.80300 3.92463 4.01864 4.11122 4.20388 4.23155 4.30411 4.33977 4.36884 4.38108 4.46813 4.64064 4.72663 4.75343 4.83744 4.86073 4.90833 4.99585 5.02012 5.08727 5.14702 5.16886 5.21653 5.25617 5.35607 5.42722 5.52020 5.55361 5.64207 5.73633 5.98251 6.12645 6.22056 6.32800 6.38144 6.48239 6.91483 6.91580 7.46505 8.98146 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.004201 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.443379 B = 6663.977588 C = 7077.472721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.326 6.326 4 C 0.084 3.916 5 C -0.201 4.201 6 C -0.093 4.093 7 C -0.140 4.140 8 C -0.112 4.112 9 C 0.099 3.901 10 N -0.533 5.533 11 C 0.082 3.918 12 C -0.115 4.115 13 C -0.100 4.100 14 C 0.052 3.948 15 H -0.002 1.002 16 C -0.533 4.533 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.278 1.278 24 C 0.089 3.911 25 C 0.072 3.928 26 O -0.488 6.488 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.024 0.976 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.011 0.989 42 H 0.057 0.943 43 H 0.260 0.740 44 H 0.057 0.943 45 H 0.011 0.989 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 -9.699 17.651 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.241 6.241 4 C 0.038 3.962 5 C -0.220 4.220 6 C -0.111 4.111 7 C -0.159 4.159 8 C -0.114 4.114 9 C -0.028 4.028 10 N -0.255 5.255 11 C -0.046 4.046 12 C -0.153 4.153 13 C -0.138 4.138 14 C 0.033 3.967 15 H 0.016 0.984 16 C -0.572 4.572 17 H 0.069 0.931 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.780 3.220 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.204 1.204 24 C -0.039 4.039 25 C 0.026 3.974 26 O -0.299 6.299 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.042 0.958 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.029 0.971 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -10.376 -8.992 16.893 21.769 hybrid contribution 0.064 -1.361 -0.635 1.503 sum -10.312 -10.352 16.258 21.860 Atomic orbital electron populations 1.21789 0.91407 1.04174 1.03066 1.23072 0.96997 0.80960 1.02071 1.86107 1.18157 1.31068 1.88718 1.19606 0.83390 0.94077 0.99128 1.21411 0.94260 0.98363 1.07930 1.21252 0.94716 0.97764 0.97337 1.21156 1.00297 0.92074 1.02342 1.20893 0.92132 0.98632 0.99761 1.21255 1.01536 0.89394 0.90628 1.62372 1.16607 1.44548 1.01971 1.21906 0.88608 0.98704 0.95333 1.21650 0.99238 0.98866 0.95528 1.21425 0.96430 0.96370 0.99618 1.18597 0.92758 0.94565 0.90735 0.98411 1.21534 1.36550 1.02549 0.96544 0.93120 1.25730 0.96542 0.96747 0.99523 1.70049 1.47501 1.21903 1.16138 0.85570 0.78379 0.79372 0.78727 1.19062 1.20778 1.20366 1.21893 0.96104 0.92452 0.93442 1.17639 0.88642 0.84390 1.06736 1.85008 1.65369 1.44978 1.34518 0.87986 0.91446 0.92566 0.92051 0.90511 0.83146 0.83222 0.84905 0.88561 0.89069 0.95811 0.89792 0.92121 0.92881 0.97033 0.92424 0.93106 0.92430 0.97064 0.74862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.04 0.76 5.46 71.98 0.39 1.15 16 3 O -0.33 -8.43 9.92 -79.62 -0.79 -9.22 16 4 C 0.08 2.32 6.70 22.57 0.15 2.47 16 5 C -0.20 -4.80 9.04 22.35 0.20 -4.60 16 6 C -0.09 -2.23 10.04 22.27 0.22 -2.01 16 7 C -0.14 -3.83 8.55 22.27 0.19 -3.64 16 8 C -0.11 -3.27 3.93 -19.78 -0.08 -3.34 16 9 C 0.10 2.91 5.42 85.56 0.46 3.38 16 10 N -0.53 -20.27 4.86 -900.93 -4.38 -24.65 16 11 C 0.08 3.12 3.94 86.32 0.34 3.46 16 12 C -0.11 -4.93 6.09 30.64 0.19 -4.75 16 13 C -0.10 -5.22 5.02 30.67 0.15 -5.07 16 14 C 0.05 2.81 2.26 -11.49 -0.03 2.78 16 15 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 16 C -0.53 -30.76 8.57 25.60 0.22 -30.54 16 17 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 18 C 0.01 0.75 5.30 84.65 0.45 1.20 16 19 N -0.92 -55.00 11.35 21.44 0.24 -54.76 16 20 Si 0.95 44.91 29.54 68.60 2.03 46.94 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 C 0.09 3.96 3.81 86.32 0.33 4.28 16 25 C 0.07 2.10 5.58 22.57 0.13 2.23 16 26 O -0.49 -13.14 9.72 -79.63 -0.77 -13.92 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 31 H 0.08 1.05 7.66 -2.39 -0.02 1.03 16 32 H 0.15 2.72 6.30 -2.91 -0.02 2.70 16 33 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.10 2.42 7.59 -2.39 -0.02 2.41 16 36 H 0.09 2.44 8.04 -2.39 -0.02 2.42 16 37 H 0.02 0.98 5.78 -2.39 -0.01 0.97 16 38 H 0.08 2.80 7.57 -2.39 -0.02 2.78 16 39 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.06 3.34 6.15 -2.39 -0.01 3.32 16 43 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.06 2.49 8.12 -2.39 -0.02 2.47 16 45 H 0.01 0.52 6.73 -2.39 -0.02 0.51 16 46 H 0.39 6.83 9.06 -74.06 -0.67 6.16 16 Total: -1.00 -69.93 356.54 0.69 -69.23 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.30 Total: 20.61 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 4.06 Total: -34.24 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -4.13 Total: -79.41 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -1.56 Total: -23.14 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.93 0.69 -69.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.283 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds