Wall clock time and date at job start Tue Mar 31 2020 09:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47101 * 2 1 4 4 C 1.35990 * 116.99979 * 180.02562 * 3 2 1 5 5 C 1.38561 * 120.07290 * 0.02562 * 4 3 2 6 6 C 1.38247 * 119.99817 * 179.70494 * 5 4 3 7 7 C 1.38252 * 120.14640 * 0.55556 * 6 5 4 8 8 C 1.38243 * 120.14586 * 359.44600 * 7 6 5 9 9 C 1.50698 * 120.00221 * 180.25302 * 8 7 6 10 10 N 1.46900 * 109.47320 * 260.00104 * 9 8 7 11 11 C 1.46852 * 110.99810 * 45.79082 * 10 9 8 12 12 C 1.53039 * 109.52211 * 185.84105 * 11 10 9 13 13 C 1.53117 * 109.27846 * 300.81877 * 12 11 10 14 14 C 1.53117 * 109.16146 * 57.65417 * 13 12 11 15 15 H 1.08998 * 109.53280 * 62.30748 * 14 13 12 16 16 C 1.50698 * 109.50722 * 182.40634 * 14 13 12 17 17 H 1.07992 * 120.00464 * 119.80159 * 16 14 13 18 18 C 1.37881 * 119.99583 * 299.80624 * 16 14 13 19 19 N 1.31515 * 119.99760 * 179.97438 * 18 16 14 20 20 Si 1.86799 * 120.00396 * 359.97438 * 18 16 14 21 21 H 1.48500 * 109.47220 * 89.99519 * 20 18 16 22 22 H 1.48493 * 109.47281 * 210.00385 * 20 18 16 23 23 H 1.48506 * 109.46612 * 330.00186 * 20 18 16 24 24 C 1.46842 * 111.00100 * 169.99896 * 10 9 8 25 25 C 1.38573 * 119.99981 * 0.27715 * 8 7 6 26 26 O 1.35988 * 120.07412 * 180.02562 * 25 8 7 27 27 H 1.09006 * 109.47181 * 299.99851 * 1 2 3 28 28 H 1.09002 * 109.47664 * 59.99970 * 1 2 3 29 29 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46710 * 240.00572 * 2 1 3 31 31 H 1.08991 * 109.47317 * 120.00360 * 2 1 3 32 32 H 1.07994 * 120.00507 * 359.97438 * 5 4 3 33 33 H 1.08001 * 119.92589 * 180.30262 * 6 5 4 34 34 H 1.08002 * 119.93071 * 179.72702 * 7 6 5 35 35 H 1.09002 * 109.47228 * 20.00513 * 9 8 7 36 36 H 1.08999 * 109.47419 * 140.00320 * 9 8 7 37 37 H 1.09003 * 109.46144 * 305.85301 * 11 10 9 38 38 H 1.08995 * 109.46175 * 65.82040 * 11 10 9 39 39 H 1.09000 * 109.50115 * 180.88018 * 12 11 10 40 40 H 1.09001 * 109.50374 * 60.76250 * 12 11 10 41 41 H 1.09009 * 109.51959 * 297.75444 * 13 12 11 42 42 H 1.08998 * 109.52460 * 177.56121 * 13 12 11 43 43 H 0.97006 * 120.00229 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.46460 * 294.17841 * 24 10 9 45 45 H 1.08998 * 109.46666 * 54.14903 * 24 10 9 46 46 H 0.96697 * 113.99986 * 89.99974 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1999 0.4277 -0.0016 6 6 5.5702 0.6106 -0.0083 7 6 6.1003 1.8875 -0.0024 8 6 5.2624 2.9870 -0.0013 9 6 5.8437 4.3774 -0.0006 10 7 5.8113 4.9210 1.3637 11 6 6.2941 3.9320 2.3359 12 6 6.1104 4.4770 3.7541 13 6 6.8924 5.7855 3.8980 14 6 6.4038 6.7816 2.8428 15 1 5.3504 7.0047 3.0123 16 6 7.2089 8.0519 2.9389 17 1 7.7880 8.3896 2.0922 18 6 7.2063 8.7829 4.1080 19 7 7.9093 9.8911 4.1921 20 14 6.2042 8.1991 5.5724 21 1 7.0390 7.3114 6.4212 22 1 5.7614 9.3719 6.3683 23 1 5.0156 7.4498 5.0917 24 6 6.5789 6.1698 1.4510 25 6 3.8879 2.8107 -0.0003 26 8 3.0623 3.8913 0.0002 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8932 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7885 -0.5708 -0.0016 33 1 6.2281 -0.2459 -0.0141 34 1 7.1714 2.0263 -0.0032 35 1 6.8746 4.3404 -0.3526 36 1 5.2572 5.0168 -0.6604 37 1 5.7269 3.0076 2.2258 38 1 7.3507 3.7330 2.1573 39 1 6.4832 3.7491 4.4748 40 1 5.0523 4.6631 3.9382 41 1 7.9553 5.5926 3.7523 42 1 6.7294 6.1997 4.8930 43 1 7.9078 10.4053 5.0147 44 1 7.6343 5.9604 1.2765 45 1 6.2187 6.8710 0.6982 46 1 2.8229 4.2038 -0.8830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826862180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:27 Heat of formation + Delta-G solvation = -51.950336 kcal Electronic energy + Delta-G solvation = -25648.931264 eV Core-core repulsion = 22117.984949 eV Total energy + Delta-G solvation = -3530.946315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65473 -38.82011 -37.68659 -36.46954 -34.05824 -32.27811 -31.97182 -30.54378 -30.02787 -29.09828 -26.24981 -24.85718 -23.92879 -22.64435 -22.31070 -21.44042 -20.44682 -18.77891 -18.37571 -17.67839 -16.67110 -16.45179 -16.40155 -15.71174 -15.36083 -14.85719 -14.35542 -14.15542 -13.94354 -13.66738 -13.48685 -13.33380 -13.19987 -12.92803 -12.75317 -12.28048 -12.22733 -12.08880 -11.96608 -11.86559 -11.55801 -11.19299 -11.06987 -10.97828 -10.88064 -10.50026 -10.35155 -9.99966 -9.88477 -9.60619 -9.04210 -8.85741 -8.76029 -8.45114 -8.21242 -7.67625 -6.01363 -3.99956 1.10139 1.25833 2.94444 3.34314 3.45521 3.49156 3.50774 4.19374 4.48976 4.53613 4.55018 4.59494 4.72452 4.83492 4.88406 5.04325 5.16184 5.20612 5.31078 5.35493 5.45929 5.51535 5.61580 5.62884 5.71005 5.77853 5.87731 5.95299 6.07554 6.08810 6.22550 6.25574 6.35981 6.40604 6.43315 6.54491 6.59907 6.69759 6.89478 6.93103 7.13513 7.28152 7.49475 7.67935 7.73931 7.82791 7.94461 8.58229 9.01880 9.62078 11.11886 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.003416 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.121032 B = 8194.478934 C = 8580.465747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.306 6.306 4 C 0.100 3.900 5 C -0.202 4.202 6 C -0.091 4.091 7 C -0.138 4.138 8 C -0.063 4.063 9 C 0.100 3.900 10 N -0.527 5.527 11 C 0.063 3.937 12 C -0.119 4.119 13 C -0.121 4.121 14 C 0.021 3.979 15 H 0.036 0.964 16 C -0.512 4.512 17 H 0.072 0.928 18 C 0.070 3.930 19 N -0.904 5.904 20 Si 0.887 3.113 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.262 1.262 24 C 0.078 3.922 25 C 0.098 3.902 26 O -0.469 6.469 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.263 0.737 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.727 -22.706 -11.047 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.220 6.220 4 C 0.055 3.945 5 C -0.221 4.221 6 C -0.109 4.109 7 C -0.156 4.156 8 C -0.064 4.064 9 C -0.027 4.027 10 N -0.251 5.251 11 C -0.065 4.065 12 C -0.157 4.157 13 C -0.159 4.159 14 C 0.001 3.999 15 H 0.055 0.945 16 C -0.551 4.551 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.542 5.542 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.227 1.227 23 H -0.187 1.187 24 C -0.049 4.049 25 C 0.051 3.949 26 O -0.277 6.277 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.287 -22.333 -10.210 26.624 hybrid contribution 0.505 -0.691 0.253 0.893 sum -9.782 -23.024 -9.957 26.925 Atomic orbital electron populations 1.21765 0.92718 1.02695 1.03705 1.22776 0.95959 0.82311 1.01157 1.86160 1.18486 1.28754 1.88615 1.19441 0.82782 0.93687 0.98631 1.21095 0.94259 0.97573 1.09172 1.20873 0.94189 0.97162 0.98698 1.20940 0.99781 0.91641 1.03286 1.20069 0.91836 0.96264 0.98256 1.20913 0.98417 0.90737 0.92668 1.62125 1.55925 1.04906 1.02164 1.22031 0.96935 0.94680 0.92820 1.21650 1.01277 0.97890 0.94910 1.22016 0.99137 0.94675 1.00061 1.19152 0.97656 0.93352 0.89694 0.94550 1.21008 1.28586 1.05166 1.00295 0.90982 1.24975 0.94957 0.94606 0.98562 1.69904 1.41300 1.15565 1.27470 0.86834 0.81519 0.77136 0.82755 1.20775 1.22667 1.18706 1.22105 0.93828 0.88731 1.00244 1.17510 0.88304 0.84002 1.05035 1.85016 1.65938 1.44491 1.32227 0.91353 0.91532 0.90486 0.92261 0.92147 0.85474 0.85690 0.85657 0.94239 0.89992 0.91657 0.95722 0.93018 0.91844 0.92657 0.93632 0.92754 0.95625 0.91444 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.43 5.46 37.16 0.20 0.64 16 3 O -0.31 -3.73 9.92 -34.21 -0.34 -4.06 16 4 C 0.10 1.27 6.70 -39.12 -0.26 1.01 16 5 C -0.20 -2.12 9.04 -39.46 -0.36 -2.47 16 6 C -0.09 -0.92 10.04 -39.57 -0.40 -1.32 16 7 C -0.14 -1.60 8.64 -39.57 -0.34 -1.94 16 8 C -0.06 -0.85 3.69 -104.50 -0.39 -1.23 16 9 C 0.10 1.47 5.07 -4.98 -0.03 1.45 16 10 N -0.53 -9.60 4.80 -236.11 -1.13 -10.74 16 11 C 0.06 1.11 4.80 -3.83 -0.02 1.09 16 12 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 13 C -0.12 -2.74 4.74 -26.61 -0.13 -2.87 16 14 C 0.02 0.50 1.85 -91.69 -0.17 0.33 16 15 H 0.04 0.95 7.19 -51.93 -0.37 0.57 16 16 C -0.51 -14.61 9.14 -34.44 -0.31 -14.92 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 19 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 20 Si 0.89 22.77 24.36 -169.99 -4.14 18.63 16 21 H -0.28 -7.01 6.89 56.52 0.39 -6.62 16 22 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 23 H -0.26 -6.58 6.53 56.52 0.37 -6.21 16 24 C 0.08 1.62 4.65 -3.83 -0.02 1.60 16 25 C 0.10 1.36 6.69 -39.12 -0.26 1.10 16 26 O -0.47 -6.70 12.52 -34.21 -0.43 -7.13 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.31 8.03 -52.49 -0.42 0.89 16 35 H 0.04 0.55 7.94 -51.93 -0.41 0.14 16 36 H 0.08 1.14 7.85 -51.93 -0.41 0.74 16 37 H 0.07 1.09 6.03 -51.93 -0.31 0.78 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 1.24 8.14 -51.92 -0.42 0.82 16 42 H 0.05 1.09 3.37 -51.93 -0.17 0.91 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 46 H 0.38 3.66 9.06 45.56 0.41 4.07 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -33.46 357.14 -8.88 -42.34 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.64 Total: 1.57 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.35 Total: -18.63 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.36 Total: -38.10 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.77 Total: -11.20 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.46 -8.88 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.610 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds